Rroxscaffold_2G00123650

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014351
Physical Location & Seq
Reverse (-)
57537498 .. 57541277
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123650.1

Sequence Viewer

Length: 990 bp
ATGGCAATCTCCTCCTCCTCCTGCTTTGTTCCTCTTCCATCTCTGAACACTGTCCCTTCTTCGTTTCCCATTTCTCTGAGTTCTGTGAGGCCTCAGAGCCGGAGAAATCAGCGCTTGGTGGTTAGCTGCTCGTCTTCTGAAACCGACTCCGCCTCTGACTCGCTCAATGGAAATGGAAGACATTCCCAAATGTCTTCTATGACTCCTTTTGGGGTGACAATGAACGAAGCTGGGTTGTCCAGACCACCTTATAAATGGCGAAGGGTCTTGCTTAAAGTAAGCGGAGAAGCACTTGCCGGAGATCACACACAGAATATTGACCCAAAGGTAACAATGGAAATTGCAAGGGAGGTTGCATCTGTGACTCGCCTTGGCATTGAGGTTGCCATTGTTGTTGGTGGGGGAAATATATTCCGTGGAGCATCCTGGGCTGGAAGTAGTGGTCTTGACCGTTCATCCGCTGATTACATCGGGATGTTAGCTACTGTAATGAATTCAATATTTCTCCAAGCCACAATGGAGAGTATTGGTATCCCTACTCGGGTGCAGACTGCATTTCGGATGTCTGAGGTTGCAGAACCTTATATACGTCGAAGGGCTGTGAGGCATCTGGAAAAGGGCAGGGTAGTGATCTTTGCAGCAGGAACTGGAAATCCATTCTTTACAACAGATACTGCTGCAGCACTTCGTGGTGCAGAGATCAATGCAGAGGTGGTGCTGAAAGCTACAAATGTTGATGGAGTTTACGATGAGGATCCTAGGTGTAACCCAAATGCCTGTCTTCTTGATACTCTTACATATCAGGAGGTGACATCAAAAGATCTTTCAGTGATGGACATGACTGCTATTACTTTATGCCAGGAGAACAAAATTCCTGTTGTTGTGTTCAATCTAAACAAACCGGGTAACATCTCAAAAGCCATAAAGGGGGAGAAGGTTGGCACGTTAATTGGGGCAGCATGGAATTCCACAGTGGCGCCAAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

329

Amino Acids

35.26

Weight (kDa)

8.82

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 88 - 297 1.8e-36 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18680 AT3G18680
fragaria_vesca FvH4_1g24030
malus_domestica MD01G1011700.v1.1 MD15G1338200.v1.1
prunus_persica Prupe.6G157900_v2.0.a1 Prupe.6G157900_v2.0.a1
pyrus_communis pycom15g28830
rosa_chinensis RchiOBHm_Chr2g0120171
rosa_laevigata RLG00000018528
rosa_multiflora Rmu_sc0015469.1_g000003
rosa_roxburghii Rroxscaffold_2G00123650
rosa_rugosa Rorug02G0227300 Rorug02G0227400
rosa_samantha Rh2AG284000 Rh2DG309000
rosa_wichuraiana Rw2G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 976
AciI CCGC 3 cut(s) 150, 282, 459
AclWI GGATC 2 cut(s) 749, 762
AcsI RAATTY 3 cut(s) 493, 870, 964
AcyI GRCGYC 1 cut(s) 977
AdeI CACNNNGTG 1 cut(s) 689
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 541, 927
AgsI TTSAA 2 cut(s) 498, 889
AjnI CCWGG 2 cut(s) 425, 858
AloI GAACNNNNNNTCC 2 cut(s) 637, 669
AluBI AGCT 4 cut(s) 126, 230, 482, 725
AluI AGCT 4 cut(s) 126, 230, 482, 725
AlwI GGATC 2 cut(s) 749, 762
AlwNI CAGNNNCTG 2 cut(s) 647, 674
Ama87I CYCGRG 1 cut(s) 540
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 5 cut(s) 126, 638, 677, 680, 956
ApoI RAATTY 3 cut(s) 493, 870, 964
Asp700I GAANNNNTTC 1 cut(s) 181
AspA2I CCTAGG 1 cut(s) 758
AspLEI GCGC 2 cut(s) 114, 979
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 2 cut(s) 226, 820
AvaI CYCGRG 1 cut(s) 540
AvrII CCTAGG 1 cut(s) 758
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 976
BbsI GAAGAC 4 cut(s) 126, 184, 186, 773
BbvI GCAGC 5 cut(s) 113, 650, 664, 692, 968
BccI CCATC 3 cut(s) 46, 731, 826
BciT130I CCWGG 2 cut(s) 427, 860
BciVI GTATCC 1 cut(s) 542
BcnI CCSGG 1 cut(s) 903
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 1 cut(s) 678
BfoI RGCGCY 2 cut(s) 115, 980
BfuI GTATCC 1 cut(s) 542
BglII AGATCT 1 cut(s) 820
BisI GCNGC 5 cut(s) 127, 639, 678, 681, 957
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 5 cut(s) 128, 640, 679, 682, 958
Bme1390I CCNGG 3 cut(s) 427, 860, 903
BmeT110I CYCGRG 1 cut(s) 540
BmiI GGNNCC 2 cut(s) 756, 978
BmrFI CCNGG 3 cut(s) 427, 860, 903
BmsI GCATC 3 cut(s) 365, 431, 616
BpiI GAAGAC 4 cut(s) 126, 184, 186, 773
BpuMI CCSGG 1 cut(s) 903
BsaBI GATNNNNATC 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 977
BsaJI CCNNGG 4 cut(s) 370, 415, 426, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 927
Bse1I ACTGG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 2 cut(s) 427, 860
BseDI CCNNGG 4 cut(s) 370, 415, 426, 758
BseGI GGATG 4 cut(s) 422, 455, 480, 567
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 2 cut(s) 541, 927
BseMII CTCAG 3 cut(s) 68, 107, 558
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 2 cut(s) 4, 7
BseXI GCAGC 5 cut(s) 113, 650, 664, 692, 968
BseYI CCCAGC 1 cut(s) 230
BsgI GTGCAG 2 cut(s) 566, 714
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 976
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 3 cut(s) 100, 297, 902
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 541, 927
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 540
Bsp143I GATC 5 cut(s) 301, 630, 699, 754, 820
BspACI CCGC 3 cut(s) 150, 282, 459
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 3 cut(s) 69, 106, 559
BspLI GGNNCC 2 cut(s) 756, 978
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 2 cut(s) 749, 762
BspT107I GGYRCC 1 cut(s) 976
BsrI ACTGG 1 cut(s) 652
BssECI CCNNGG 4 cut(s) 370, 415, 426, 758
BssMI GATC 5 cut(s) 301, 630, 699, 754, 820
BssNI GRCGYC 1 cut(s) 977
BssT1I CCWWGG 2 cut(s) 370, 758
Bst2UI CCWGG 2 cut(s) 427, 860
Bst4CI ACNGT 4 cut(s) 52, 452, 487, 973
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 977
BstDEI CTNAG 3 cut(s) 77, 93, 567
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 4 cut(s) 422, 455, 480, 567
BstH2I RGCGCY 2 cut(s) 115, 980
BstHHI GCGC 2 cut(s) 114, 979
BstKTI GATC 5 cut(s) 304, 633, 702, 757, 823
BstMBI GATC 5 cut(s) 301, 630, 699, 754, 820
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 2 cut(s) 427, 860
BstSCI CCNGG 3 cut(s) 425, 858, 901
BstSFI CTRYAG 1 cut(s) 678
BstV1I GCAGC 5 cut(s) 113, 650, 664, 692, 968
BstV2I GAAGAC 4 cut(s) 126, 184, 186, 773
BstX2I RGATCY 2 cut(s) 754, 820
BstYI RGATCY 2 cut(s) 754, 820
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 415
BtsCI GGATG 4 cut(s) 422, 455, 480, 567
BtsIMutI CAGTG 3 cut(s) 48, 834, 978
CaiI CAGNNNCTG 2 cut(s) 647, 674
CfoI GCGC 2 cut(s) 114, 979
CviAII CATG 3 cut(s) 838, 960, 987
DdeI CTNAG 3 cut(s) 77, 93, 567
DinI GGCGCC 1 cut(s) 978
DpnI GATC 5 cut(s) 303, 632, 701, 756, 822
DpnII GATC 5 cut(s) 301, 630, 699, 754, 820
DraIII CACNNNGTG 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 370, 758
Eco147I AGGCCT 1 cut(s) 91
Eco47III AGCGCT 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 540
EcoRI GAATTC 2 cut(s) 493, 964
EcoRII CCWGG 2 cut(s) 425, 858
EcoT14I CCWWGG 2 cut(s) 370, 758
EgeI GGCGCC 1 cut(s) 978
EheI GGCGCC 1 cut(s) 978
ErhI CCWWGG 2 cut(s) 370, 758
FaeI CATG 3 cut(s) 841, 963, 990
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 837, 959, 986
Fnu4HI GCNGC 5 cut(s) 127, 639, 678, 681, 957
FokI GGATG 4 cut(s) 409, 442, 487, 574
Fsp4HI GCNGC 5 cut(s) 127, 639, 678, 681, 957
FspBI CTAG 1 cut(s) 759
GlaI GCGC 2 cut(s) 113, 978
GluI GCNGC 5 cut(s) 127, 639, 678, 681, 957
GsaI CCCAGC 1 cut(s) 234
HaeII RGCGCY 2 cut(s) 115, 980
HaeIII GGCC 1 cut(s) 91
HapII CCGG 3 cut(s) 100, 297, 902
HhaI GCGC 2 cut(s) 114, 979
Hin1I GRCGYC 1 cut(s) 977
Hin1II CATG 3 cut(s) 841, 963, 990
Hin6I GCGC 2 cut(s) 112, 977
HinP1I GCGC 2 cut(s) 112, 977
HinfI GANTC 4 cut(s) 146, 158, 202, 364
HpaII CCGG 3 cut(s) 100, 297, 902
HphI GGTGA 2 cut(s) 226, 820
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 7 cut(s) 45, 78, 96, 139, 157, 561, 568
Hpy188III TCNNGA 6 cut(s) 240, 446, 472, 611, 785, 803
Hpy8I GTNNAC 1 cut(s) 745
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 4 cut(s) 66, 255, 588, 928
HpyCH4III ACNGT 4 cut(s) 52, 452, 487, 973
HpyCH4IV ACGT 2 cut(s) 589, 944
HpyCH4V TGCA 9 cut(s) 344, 356, 547, 554, 575, 638, 680, 695, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 3 cut(s) 77, 93, 567
HpySE526I ACGT 2 cut(s) 589, 944
Hsp92I GRCGYC 1 cut(s) 977
Hsp92II CATG 3 cut(s) 841, 963, 990
HspAI GCGC 2 cut(s) 112, 977
KasI GGCGCC 1 cut(s) 976
Kzo9I GATC 5 cut(s) 301, 630, 699, 754, 820
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 5 cut(s) 113, 650, 664, 692, 968
LweI GCATC 3 cut(s) 365, 431, 616
MaeI CTAG 1 cut(s) 759
MaeII ACGT 2 cut(s) 589, 944
MaeIII GTNAC 6 cut(s) 214, 328, 361, 764, 808, 905
MalI GATC 5 cut(s) 303, 632, 701, 756, 822
MboI GATC 5 cut(s) 301, 630, 699, 754, 820
MboII GAAGA 6 cut(s) 26, 51, 126, 186, 189, 773
MflI RGATCY 2 cut(s) 754, 820
MluCI AATT 5 cut(s) 339, 493, 870, 948, 964
Mly113I GGCGCC 1 cut(s) 977
MlyI GAGTC 4 cut(s) 140, 152, 196, 358
MroXI GAANNNNTTC 1 cut(s) 181
MseI TTAA 2 cut(s) 273, 947
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 3 cut(s) 100, 297, 902
MspR9I CCNGG 3 cut(s) 427, 860, 903
MvaI CCWGG 2 cut(s) 427, 860
MwoI GCNNNNNNNGC 1 cut(s) 428
NarI GGCGCC 1 cut(s) 977
NciI CCSGG 1 cut(s) 903
NdeII GATC 5 cut(s) 301, 630, 699, 754, 820
NlaIII CATG 3 cut(s) 841, 963, 990
NlaIV GGNNCC 2 cut(s) 756, 978
NmuCI GTSAC 3 cut(s) 214, 361, 808
PceI AGGCCT 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 181
PkrI GCNGC 5 cut(s) 128, 640, 679, 682, 958
PleI GAGTC 4 cut(s) 140, 152, 196, 358
PluTI GGCGCC 1 cut(s) 980
PpsI GAGTC 4 cut(s) 140, 152, 196, 358
PsiI TTATAA 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 425, 858
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 2 cut(s) 425, 858
PspN4I GGNNCC 2 cut(s) 756, 978
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PstI CTGCAG 1 cut(s) 682
PstNI CAGNNNCTG 2 cut(s) 647, 674
PsuI RGATCY 2 cut(s) 754, 820
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 2 cut(s) 273, 947
SatI GCNGC 5 cut(s) 127, 639, 678, 681, 957
Sau3AI GATC 5 cut(s) 301, 630, 699, 754, 820
SchI GAGTC 4 cut(s) 140, 152, 196, 358
ScrFI CCNGG 3 cut(s) 427, 860, 903
SfaNI GCATC 3 cut(s) 365, 431, 616
SfcI CTRYAG 1 cut(s) 678
SfoI GGCGCC 1 cut(s) 978
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 5 cut(s) 339, 493, 870, 948, 964
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 3 cut(s) 150, 282, 459
SspDI GGCGCC 1 cut(s) 976
SspI AATATT 2 cut(s) 316, 501
SspMI CTAG 1 cut(s) 759
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 3 cut(s) 425, 858, 901
StyI CCWWGG 2 cut(s) 370, 758
TaaI ACNGT 4 cut(s) 52, 452, 487, 973
TaiI ACGT 2 cut(s) 592, 947
TaqI TCGA 1 cut(s) 592
TasI AATT 5 cut(s) 339, 493, 870, 948, 964
Tru1I TTAA 2 cut(s) 273, 947
Tru9I TTAA 2 cut(s) 273, 947
TscAI CASTG 3 cut(s) 55, 834, 978
TseFI GTSAC 3 cut(s) 214, 361, 808
TseI GCWGC 5 cut(s) 126, 638, 677, 680, 956
Tsp45I GTSAC 3 cut(s) 214, 361, 808
TspDTI ATGAA 3 cut(s) 236, 444, 506
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 3 cut(s) 55, 834, 978
XapI RAATTY 3 cut(s) 493, 870, 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XmaJI CCTAGG 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.