FvH4_1g24030

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014351
Physical Location & Seq
Forward (+)
15893077 .. 15897191
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24030.t1

Sequence Viewer

Length: 1008 bp
ATGGCAATCTCCTTTCCTCTTCTGTCTCTGAACGCCGTCTCTTCATCTTCTTCTTCTTCTTCTTCTTTGTTTCCATTTCCGCTGAGTTCTTTGAACTCCCAGAGCCGTGGTTTAGTACTGAGAAATCACCGCTCGGTGGTTAGCTGCTCGTCTTCTGAGACGGACTCCGGGTCTGAATCGCTCAATGGAAATGGAAGACATTCCCAAATGTCGTCTATGACACCTTTTGGGGTGACAATGAATGAAGCTGGGTTGTCCAGACCACCTTATAAATGGCGAAGGGTCTTGCTTAAAGTAAGTGGAGAAGCACTTGCTGGAGATCACACACAGAATATTGACCCAAAGGTAACGATGGAAATTGCAAGGGAGGTTGCATCTGTGACTCGCCTTGGCGTTGAGGTTGCCATTGTTGTTGGTGGGGGAAATATATTCCGTGGAGCCTCCTGGGCTGGAAGTAGTGGTCTTGACCGTTCATCTGCTGATTACATCGGGATGTTGGCTACTGTAATGAATTCAATATTTCTTCAAGCCACAATGGAGAGTATTGGTATCCCTACTAGAGTGCAGACTGCATTTCGGATGTCTGAGGTTGCAGAACCCTATATACGTCGAAGGGCTGTGAGGCATCTGGAAAAGGGCAGGGTAGTGATCTTTGCAGCAGGAACGGGAAATCCATTCTTTACAACAGATACTGCCGCAGCACTTCGTGGTGCAGAAATCAATGCAGAGGTGGTGCTGAAAGCTACAAATGTTGATGGAGTTTACGATGAGGATCCTAGGTGTAATCCAAATGCCCGTCTTCTTGATACTCTTACATATCAGGAGGTGACATCAAAAGATCTTTCAGTGATGGACATGACTGCCATTACTTTATGCCAGGAGAACAAAATTCCTGTTGTGGTGTTCAATCTATGCAAACCGGGTAACATCTCAAGAGCCATAAAGGGGGAGAAGGTCGGCACGTTAATTGGGGCAGCATGGAATTCAACAGTGGCGCCAAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

336

Amino Acids

35.84

Weight (kDa)

8.93

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 94 - 303 8.3e-37 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18680 AT3G18680
fragaria_vesca FvH4_1g24030
malus_domestica MD01G1011700.v1.1 MD15G1338200.v1.1
prunus_persica Prupe.6G157900_v2.0.a1 Prupe.6G157900_v2.0.a1
pyrus_communis pycom15g28830
rosa_chinensis RchiOBHm_Chr2g0120171
rosa_laevigata RLG00000018528
rosa_multiflora Rmu_sc0015469.1_g000003
rosa_roxburghii Rroxscaffold_2G00123650
rosa_rugosa Rorug02G0227300 Rorug02G0227400
rosa_samantha Rh2AG284000 Rh2DG309000
rosa_wichuraiana Rw2G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 994
AccBSI CCGCTC 1 cut(s) 132
AciI CCGC 3 cut(s) 80, 130, 696
AclWI GGATC 2 cut(s) 767, 780
AcsI RAATTY 3 cut(s) 511, 888, 982
AcyI GRCGYC 1 cut(s) 995
AdeI CACNNNGTG 1 cut(s) 707
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 136, 945
AgsI TTSAA 5 cut(s) 94, 516, 527, 907, 987
AhdI GACNNNNNGTC 1 cut(s) 169
AjnI CCWGG 2 cut(s) 443, 876
AloI GAACNNNNNNTCC 2 cut(s) 655, 687
AluBI AGCT 3 cut(s) 144, 248, 743
AluI AGCT 3 cut(s) 144, 248, 743
Alw26I GTCTC 3 cut(s) 30, 43, 152
AlwI GGATC 2 cut(s) 767, 780
AlwNI CAGNNNCTG 1 cut(s) 692
ApeKI GCWGC 4 cut(s) 144, 656, 698, 974
ApoI RAATTY 3 cut(s) 511, 888, 982
Asp700I GAANNNNTTC 1 cut(s) 199
AspA2I CCTAGG 1 cut(s) 776
AspLEI GCGC 1 cut(s) 997
AsuC2I CCSGG 2 cut(s) 169, 921
AsuHPI GGTGA 3 cut(s) 119, 244, 838
AvrII CCTAGG 1 cut(s) 776
BamHI GGATCC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 994
BbsI GAAGAC 3 cut(s) 144, 202, 791
BbvI GCAGC 4 cut(s) 131, 668, 710, 986
BccI CCATC 3 cut(s) 346, 749, 844
BceAI ACGGC 2 cut(s) 20, 90
BciT130I CCWGG 2 cut(s) 445, 878
BciVI GTATCC 1 cut(s) 560
BcnI CCSGG 2 cut(s) 169, 921
BcoDI GTCTC 3 cut(s) 30, 43, 152
BfaI CTAG 2 cut(s) 558, 777
BfoI RGCGCY 1 cut(s) 998
BfuI GTATCC 1 cut(s) 560
BglI GCCNNNNNGGC 1 cut(s) 446
BglII AGATCT 1 cut(s) 838
BisI GCNGC 5 cut(s) 145, 657, 696, 699, 975
BlnI CCTAGG 1 cut(s) 776
BlsI GCNGC 5 cut(s) 146, 658, 697, 700, 976
BmcAI AGTACT 1 cut(s) 117
Bme1390I CCNGG 4 cut(s) 169, 445, 878, 921
BmeRI GACNNNNNGTC 1 cut(s) 169
BmiI GGNNCC 3 cut(s) 439, 774, 996
BmrFI CCNGG 4 cut(s) 169, 445, 878, 921
BmsI GCATC 2 cut(s) 383, 634
BpiI GAAGAC 3 cut(s) 144, 202, 791
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 916
BpuMI CCSGG 2 cut(s) 169, 921
BsaBI GATNNNNATC 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 995
BsaJI CCNNGG 5 cut(s) 106, 388, 433, 444, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 945
Bse8I GATNNNNATC 1 cut(s) 771
BseBI CCWGG 2 cut(s) 445, 878
BseDI CCNNGG 5 cut(s) 106, 388, 433, 444, 776
BseGI GGATG 2 cut(s) 498, 585
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 2 cut(s) 136, 945
BseMII CTCAG 4 cut(s) 74, 110, 147, 576
BseXI GCAGC 4 cut(s) 131, 668, 710, 986
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 2 cut(s) 584, 732
BshNI GGYRCC 1 cut(s) 994
BsiSI CCGG 2 cut(s) 168, 920
BslI CCNNNNNNNGG 2 cut(s) 136, 945
BsmAI GTCTC 3 cut(s) 30, 43, 152
BsmBI CGTCTC 2 cut(s) 43, 152
Bsp143I GATC 4 cut(s) 319, 648, 772, 838
BspACI CCGC 3 cut(s) 80, 130, 696
BspCNI CTCAG 4 cut(s) 75, 111, 148, 577
BspLI GGNNCC 3 cut(s) 439, 774, 996
BspPI GGATC 2 cut(s) 767, 780
BspT107I GGYRCC 1 cut(s) 994
BsrBI CCGCTC 1 cut(s) 132
BssECI CCNNGG 5 cut(s) 106, 388, 433, 444, 776
BssMI GATC 4 cut(s) 319, 648, 772, 838
BssNI GRCGYC 1 cut(s) 995
BssT1I CCWWGG 2 cut(s) 388, 776
Bst2UI CCWGG 2 cut(s) 445, 878
Bst4CI ACNGT 3 cut(s) 470, 505, 991
Bst6I CTCTTC 2 cut(s) 24, 46
BstACI GRCGYC 1 cut(s) 995
BstDEI CTNAG 4 cut(s) 83, 119, 156, 585
BstDSI CCRYGG 2 cut(s) 106, 433
BstF5I GGATG 2 cut(s) 498, 585
BstH2I RGCGCY 1 cut(s) 998
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 4 cut(s) 322, 651, 775, 841
BstMAI GTCTC 3 cut(s) 30, 43, 152
BstMBI GATC 4 cut(s) 319, 648, 772, 838
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 2 cut(s) 445, 878
BstSCI CCNGG 4 cut(s) 167, 443, 876, 919
BstV1I GCAGC 4 cut(s) 131, 668, 710, 986
BstV2I GAAGAC 3 cut(s) 144, 202, 791
BstX2I RGATCY 2 cut(s) 772, 838
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 2 cut(s) 772, 838
BsuI GTATCC 1 cut(s) 560
BtgI CCRYGG 2 cut(s) 106, 433
BtsCI GGATG 2 cut(s) 498, 585
BtsIMutI CAGTG 2 cut(s) 852, 996
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 1 cut(s) 997
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 856, 978
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 4 cut(s) 83, 119, 156, 585
DinI GGCGCC 1 cut(s) 996
DpnI GATC 4 cut(s) 321, 650, 774, 840
DpnII GATC 4 cut(s) 319, 648, 772, 838
DraIII CACNNNGTG 1 cut(s) 707
DriI GACNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 24, 46
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 2 cut(s) 24, 46
Eco130I CCWWGG 2 cut(s) 388, 776
EcoRI GAATTC 2 cut(s) 511, 982
EcoRII CCWGG 2 cut(s) 443, 876
EcoT14I CCWWGG 2 cut(s) 388, 776
EgeI GGCGCC 1 cut(s) 996
EheI GGCGCC 1 cut(s) 996
ErhI CCWWGG 2 cut(s) 388, 776
Esp3I CGTCTC 2 cut(s) 43, 152
FaeI CATG 2 cut(s) 859, 981
FatI CATG 2 cut(s) 855, 977
Fnu4HI GCNGC 5 cut(s) 145, 657, 696, 699, 975
FokI GGATG 2 cut(s) 505, 592
Fsp4HI GCNGC 5 cut(s) 145, 657, 696, 699, 975
FspBI CTAG 2 cut(s) 558, 777
GlaI GCGC 1 cut(s) 996
GluI GCNGC 5 cut(s) 145, 657, 696, 699, 975
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 998
HapII CCGG 2 cut(s) 168, 920
HhaI GCGC 1 cut(s) 997
Hin1I GRCGYC 1 cut(s) 995
Hin1II CATG 2 cut(s) 859, 981
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HinfI GANTC 3 cut(s) 164, 176, 382
HpaII CCGG 2 cut(s) 168, 920
HphI GGTGA 3 cut(s) 119, 244, 838
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 5 cut(s) 30, 157, 175, 579, 586
Hpy188III TCNNGA 7 cut(s) 258, 464, 490, 629, 803, 821, 933
Hpy8I GTNNAC 1 cut(s) 763
Hpy99I CGWCG 1 cut(s) 612
HpyAV CCTTC 3 cut(s) 273, 606, 946
HpyCH4III ACNGT 3 cut(s) 470, 505, 991
HpyCH4IV ACGT 2 cut(s) 607, 962
HpyCH4V TGCA 9 cut(s) 362, 374, 565, 572, 593, 656, 713, 725, 915
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 4 cut(s) 83, 119, 156, 585
HpySE526I ACGT 2 cut(s) 607, 962
Hsp92I GRCGYC 1 cut(s) 995
Hsp92II CATG 2 cut(s) 859, 981
HspAI GCGC 1 cut(s) 995
KasI GGCGCC 1 cut(s) 994
Kzo9I GATC 4 cut(s) 319, 648, 772, 838
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 4 cut(s) 131, 668, 710, 986
LweI GCATC 2 cut(s) 383, 634
MaeI CTAG 2 cut(s) 558, 777
MaeII ACGT 2 cut(s) 607, 962
MaeIII GTNAC 5 cut(s) 232, 346, 379, 826, 923
MalI GATC 4 cut(s) 321, 650, 774, 840
MbiI CCGCTC 1 cut(s) 132
MboI GATC 4 cut(s) 319, 648, 772, 838
MflI RGATCY 2 cut(s) 772, 838
MluCI AATT 5 cut(s) 357, 511, 888, 966, 982
Mly113I GGCGCC 1 cut(s) 995
MlyI GAGTC 2 cut(s) 158, 376
MnlI CCTC 9 cut(s) 27, 361, 391, 451, 580, 615, 721, 763, 817
MroXI GAANNNNTTC 1 cut(s) 199
MseI TTAA 2 cut(s) 291, 965
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 2 cut(s) 168, 920
MspR9I CCNGG 4 cut(s) 169, 445, 878, 921
MvaI CCWGG 2 cut(s) 445, 878
MwoI GCNNNNNNNGC 1 cut(s) 446
NarI GGCGCC 1 cut(s) 995
NciI CCSGG 2 cut(s) 169, 921
NdeII GATC 4 cut(s) 319, 648, 772, 838
NlaIII CATG 2 cut(s) 859, 981
NlaIV GGNNCC 3 cut(s) 439, 774, 996
NmuCI GTSAC 3 cut(s) 232, 379, 826
PdmI GAANNNNTTC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 5 cut(s) 146, 658, 697, 700, 976
PleI GAGTC 2 cut(s) 158, 376
PluTI GGCGCC 1 cut(s) 998
PpsI GAGTC 2 cut(s) 158, 376
PsiI TTATAA 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 443, 876
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 2 cut(s) 443, 876
PspN4I GGNNCC 3 cut(s) 439, 774, 996
PsrI GAACNNNNNNTAC 2 cut(s) 588, 620
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 2 cut(s) 772, 838
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 2 cut(s) 291, 965
SatI GCNGC 5 cut(s) 145, 657, 696, 699, 975
Sau3AI GATC 4 cut(s) 319, 648, 772, 838
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 2 cut(s) 158, 376
ScrFI CCNGG 4 cut(s) 169, 445, 878, 921
SfaNI GCATC 2 cut(s) 383, 634
SfoI GGCGCC 1 cut(s) 996
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 931
SmoI CTYRAG 1 cut(s) 931
Sse9I AATT 5 cut(s) 357, 511, 888, 966, 982
SsiI CCGC 3 cut(s) 80, 130, 696
SspDI GGCGCC 1 cut(s) 994
SspI AATATT 2 cut(s) 334, 519
SspMI CTAG 2 cut(s) 558, 777
StyD4I CCNGG 4 cut(s) 167, 443, 876, 919
StyI CCWWGG 2 cut(s) 388, 776
TaaI ACNGT 3 cut(s) 470, 505, 991
TaiI ACGT 2 cut(s) 610, 965
TaqI TCGA 1 cut(s) 610
TasI AATT 5 cut(s) 357, 511, 888, 966, 982
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 291, 965
Tru9I TTAA 2 cut(s) 291, 965
TscAI CASTG 2 cut(s) 852, 996
TseFI GTSAC 3 cut(s) 232, 379, 826
TseI GCWGC 4 cut(s) 144, 656, 698, 974
Tsp45I GTSAC 3 cut(s) 232, 379, 826
TspDTI ATGAA 5 cut(s) 33, 254, 258, 462, 524
TspGWI ACGGA 2 cut(s) 176, 422
TspRI CASTG 2 cut(s) 852, 996
XapI RAATTY 3 cut(s) 511, 888, 982
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XmaJI CCTAGG 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 2 cut(s) 558, 777
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.