Rorug02G0227400

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014351
Physical Location & Seq
Forward (+)
22482524 .. 22484029
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0227400.1

Sequence Viewer

Length: 603 bp
ATGGCAACCATCAATGGCTTCCACCTTCACATGTCCAGCCTCAGAAGCCAAGAACACAAGTCCCAAGTCCTGCATGGTACTAATTTGCTGTGTCTCCATGAGAGTACTCCTCATCCAAGATCATCATCATTCAACAAAGTTCCAAGAAAACCCAGCCATGATTACAGACTGATCTCAAAGGCGACGTCTCATGCATCAGATAGTTCTCAACCAGAACCTCATCAAGTTCCGGCCAAATCCCCATTCTCTGCCTGGAAACATTGGATACTGGGATTAACGTTAAGCATATTAGTACCTTCTTTTAGACACAAAGGGGGACCTTTCCTAGTCCTTAAAAGCAAGGTGGATGTGGCAGTGGAAACAGTGGAGTCCGTGACAGAGGTTGTGGAAGAGTTAGCTGAGGAAGTAGAGAAGGTGTCTGAACAAGTAGCAGACAAGCTACCTGATGATGCTAAGCTTAAGAAAGCTGTGGAGTCAGTTGAACATTTGGCCGAAGAAGCAGTGGAGAAAGCTAAGCTAGCTGAGGATATCATTCACAAGGTAAAGGAAGTGGAGAAAGAGGTGGAGGAGGCACTAATTGATGGCTCAGACAAGAAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

200

Amino Acids

22.21

Weight (kDa)

6.11

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18680 AT3G18680
fragaria_vesca FvH4_1g24030
malus_domestica MD01G1011700.v1.1 MD15G1338200.v1.1
prunus_persica Prupe.6G157900_v2.0.a1 Prupe.6G157900_v2.0.a1
pyrus_communis pycom15g28830
rosa_chinensis RchiOBHm_Chr2g0120171
rosa_laevigata RLG00000018528
rosa_multiflora Rmu_sc0015469.1_g000003
rosa_roxburghii Rroxscaffold_2G00123650
rosa_rugosa Rorug02G0227300 Rorug02G0227400
rosa_samantha Rh2AG284000 Rh2DG309000
rosa_wichuraiana Rw2G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
AclI AACGTT 1 cut(s) 278
AcoI YGGCCR 2 cut(s) 231, 489
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 3 cut(s) 79, 106, 294
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 2 cut(s) 133, 482
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 7 cut(s) 398, 439, 457, 467, 512, 517, 521
AluI AGCT 7 cut(s) 398, 439, 457, 467, 512, 517, 521
Alw26I GTCTC 2 cut(s) 98, 192
AoxI GGCC 2 cut(s) 231, 489
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 1 cut(s) 317
AsuNHI GCTAGC 1 cut(s) 517
AvaII GGWCC 1 cut(s) 317
BbvCI CCTCAGC 2 cut(s) 399, 522
BccI CCATC 2 cut(s) 17, 575
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 98, 192
BfaI CTAG 2 cut(s) 326, 518
BfrI CTTAAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 258
BlpI GCTNAGC 2 cut(s) 453, 513
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 203, 439
BmtI GCTAGC 1 cut(s) 521
BmuI ACTGGG 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 2 cut(s) 399, 522
Bpu1102I GCTNAGC 2 cut(s) 453, 513
BsaBI GATNNNNATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 112, 352
BseJI GATNNNNATC 1 cut(s) 124
BseMII CTCAG 4 cut(s) 55, 390, 513, 600
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 2 cut(s) 99, 581
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 2 cut(s) 233, 491
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 46, 330
BsmAI GTCTC 2 cut(s) 98, 192
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 46, 330
BsnI GGCC 2 cut(s) 233, 491
Bsp143I GATC 2 cut(s) 119, 171
Bsp1720I GCTNAGC 2 cut(s) 453, 513
BspANI GGCC 2 cut(s) 233, 491
BspCNI CTCAG 4 cut(s) 54, 391, 514, 599
BspLI GGNNCC 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 521
BspTI CTTAAG 1 cut(s) 458
BsrI ACTGG 1 cut(s) 273
BssMI GATC 2 cut(s) 119, 171
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 7 cut(s) 41, 399, 453, 513, 522, 586, 600
BstF5I GGATG 2 cut(s) 112, 352
BstKTI GATC 2 cut(s) 122, 174
BstMAI GTCTC 2 cut(s) 98, 192
BstMBI GATC 2 cut(s) 119, 171
BstMWI GCNNNNNNNGC 3 cut(s) 45, 497, 518
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 251
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 233, 491
BtsCI GGATG 2 cut(s) 112, 352
BtsI GCAGTG 2 cut(s) 360, 507
BtsIMutI CAGTG 3 cut(s) 360, 369, 507
Cac8I GCNNGC 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 78, 105, 293
CviAII CATG 5 cut(s) 31, 74, 98, 158, 191
CviQI GTAC 3 cut(s) 78, 105, 293
DdeI CTNAG 7 cut(s) 41, 399, 453, 513, 522, 586, 600
DpnI GATC 2 cut(s) 121, 173
DpnII GATC 2 cut(s) 119, 171
EaeI YGGCCR 2 cut(s) 231, 489
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 251
EcoRV GATATC 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 5 cut(s) 34, 77, 101, 161, 194
FaiI YATR 6 cut(s) 32, 75, 99, 159, 192, 287
FaqI GGGAC 2 cut(s) 46, 330
FatI CATG 5 cut(s) 30, 73, 97, 157, 190
FokI GGATG 2 cut(s) 99, 359
FspBI CTAG 2 cut(s) 326, 518
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 2 cut(s) 233, 491
HapII CCGG 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 5 cut(s) 34, 77, 101, 161, 194
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 368, 473
HpaII CCGG 1 cut(s) 230
Hpy188I TCNGA 4 cut(s) 44, 199, 421, 589
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 35, 306, 406
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 2 cut(s) 185, 278
HpyCH4V TGCA 2 cut(s) 73, 194
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 497, 518
HpyF3I CTNAG 7 cut(s) 41, 399, 453, 513, 522, 586, 600
HpySE526I ACGT 2 cut(s) 185, 278
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 5 cut(s) 34, 77, 101, 161, 194
Kzo9I GATC 2 cut(s) 119, 171
LpnPI CCDG 9 cut(s) 49, 83, 166, 225, 238, 243, 254, 265, 456
LweI GCATC 2 cut(s) 203, 439
MaeI CTAG 2 cut(s) 326, 518
MaeII ACGT 2 cut(s) 185, 278
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 121, 173
MboI GATC 2 cut(s) 119, 171
MboII GAAGA 2 cut(s) 401, 506
MluCI AATT 2 cut(s) 82, 576
MlyI GAGTC 2 cut(s) 377, 482
MnlI CCTC 9 cut(s) 50, 120, 228, 373, 394, 517, 553, 559, 562
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 4 cut(s) 275, 281, 333, 459
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 45, 497, 518
NdeII GATC 2 cut(s) 119, 171
NheI GCTAGC 1 cut(s) 517
NlaIII CATG 5 cut(s) 34, 77, 101, 161, 194
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PleI GAGTC 2 cut(s) 376, 481
PpsI GAGTC 2 cut(s) 376, 481
PpuMI RGGWCCY 1 cut(s) 317
PscI ACATGT 1 cut(s) 30
Psp1406I AACGTT 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 317
PspPPI RGGWCCY 1 cut(s) 317
RsaI GTAC 3 cut(s) 79, 106, 294
RsaNI GTAC 3 cut(s) 78, 105, 293
SaqAI TTAA 4 cut(s) 275, 281, 333, 459
Sau3AI GATC 2 cut(s) 119, 171
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 2 cut(s) 377, 482
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 2 cut(s) 203, 439
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 2 cut(s) 82, 576
SspMI CTAG 2 cut(s) 326, 518
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 2 cut(s) 188, 281
TasI AATT 2 cut(s) 82, 576
TatI WGTACW 1 cut(s) 104
Tru1I TTAA 4 cut(s) 275, 281, 333, 459
Tru9I TTAA 4 cut(s) 275, 281, 333, 459
TscAI CASTG 3 cut(s) 360, 369, 507
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 3 cut(s) 360, 369, 507
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 317
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 2 cut(s) 71, 249
XspI CTAG 2 cut(s) 326, 518
ZraI GACGTC 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.