AT3G18790

Isy1-like splicing family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006322
Physical Location & Seq
Forward (+)
6477661 .. 6479582
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18790.1

Sequence Viewer

Length: 903 bp
ATGGCTCGTAATGAAGAGAAAGCACAGTCGATGCTCAACAGATTCATCACCCAGAAAGAATCTGAGAAGAAGAAGCCAAAAGAGCGTCGACCTTACCTCGCATCAGAATGTAGAGATCTAGCTGAAGCAGACAAATGGAGACAGCAAATTTTGAGAGAGATCGGTAGCAAAGTAGCTGAGATTCAGAACGAAGGATTAGGAGAGCACAGACTTCGAGATCTAAACGATGAGATTAACAAGCTTCTCAGGGAGAGATATCATTGGGAGCGGCGAATCGTTGAGCTAGGTGGTCACAATTACTCGAAACATTCGGCGAAGATGACGGATCTAGAAGGTAACATAATCGATGTACCTAACCCTAGTGGTCGTGGTCCTGGTTATCGTTACTTCGGAGCTGCTAAGAAACTTCCTGGTGTTAGAGAGCTTTTTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATATAAAAGGATTGATGCTAGCTATTATGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAGTTGGAGAGGAAATCTGAAGGAGGGATGAGGAAAAGATCGGTGGAGGAGTGGCGGAGATTAGATGAGGTTAGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCAGCTGCTGCGGCGAGGGAAGTGTTGTTTGAGGAGGAGGAGGATGTTGTTGAGGAGGAGAGGATGGAGAGGGAGAAAGAGGAGGAGAAAGAGAGGGAATTTGTGGTTCATGTTCCGTTGCCTGATGAGAAGGAGATTGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCTAGTGAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Isy1

Protein Analysis

300

Amino Acids

35.38

Weight (kDa)

6.41

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Isy1 PF06246 1 - 279 4.9e-91 Isy1-like splicing family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 88
AciI CCGC 3 cut(s) 268, 589, 665
AclWI GGATC 2 cut(s) 333, 831
AcsI RAATTY 2 cut(s) 147, 752
AcuI CTGAAG 2 cut(s) 144, 573
AfaI GTAC 1 cut(s) 351
AjnI CCWGG 2 cut(s) 373, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 333, 831
AlwNI CAGNNNCTG 1 cut(s) 662
ApeKI GCWGC 6 cut(s) 395, 653, 656, 659, 662, 862
ApoI RAATTY 2 cut(s) 147, 752
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 491
AvaII GGWCC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 6 cut(s) 382, 640, 646, 649, 668, 874
BccI CCATC 4 cut(s) 515, 712, 793, 814
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 2 cut(s) 375, 411
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 9 cut(s) 119, 284, 329, 360, 462, 492, 618, 630, 843
BfmI CTRYAG 1 cut(s) 654
BglII AGATCT 2 cut(s) 115, 217
BisI GCNGC 8 cut(s) 269, 396, 654, 657, 660, 663, 666, 863
BlsI GCNGC 8 cut(s) 270, 397, 655, 658, 661, 664, 667, 864
Bme1390I CCNGG 2 cut(s) 375, 411
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmrFI CCNGG 2 cut(s) 375, 411
BmsI GCATC 3 cut(s) 21, 110, 478
BmtI GCTAGC 1 cut(s) 495
Bpu10I CCTNAGC 2 cut(s) 441, 446
Bsa29I ATCGAT 1 cut(s) 345
BseBI CCWGG 2 cut(s) 375, 411
BseCI ATCGAT 1 cut(s) 345
BseGI GGATG 3 cut(s) 567, 703, 723
BseMII CTCAG 6 cut(s) 54, 168, 259, 432, 437, 861
BseRI GAGGAG 8 cut(s) 596, 701, 704, 707, 722, 725, 749, 752
BseXI GCAGC 6 cut(s) 382, 640, 646, 649, 668, 874
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 6 cut(s) 115, 159, 217, 325, 572, 823
BspACI CCGC 3 cut(s) 268, 589, 665
BspCNI CTCAG 6 cut(s) 55, 169, 258, 433, 438, 862
BspDI ATCGAT 1 cut(s) 345
BspMAI CTGCAG 1 cut(s) 658
BspOI GCTAGC 1 cut(s) 495
BspPI GGATC 2 cut(s) 333, 831
BsrBI CCGCTC 1 cut(s) 268
BssMI GATC 6 cut(s) 115, 159, 217, 325, 572, 823
Bst2UI CCWGG 2 cut(s) 375, 411
Bst4CI ACNGT 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 8 cut(s) 63, 177, 245, 399, 441, 446, 830, 870
BstF5I GGATG 3 cut(s) 567, 703, 723
BstKTI GATC 6 cut(s) 118, 162, 220, 328, 575, 826
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 6 cut(s) 115, 159, 217, 325, 572, 823
BstMWI GCNNNNNNNGC 6 cut(s) 82, 442, 451, 659, 662, 665
BstNI CCWGG 2 cut(s) 375, 411
BstSCI CCNGG 2 cut(s) 373, 409
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 6 cut(s) 382, 640, 646, 649, 668, 874
BstX2I RGATCY 4 cut(s) 115, 217, 325, 823
BstYI RGATCY 4 cut(s) 115, 217, 325, 823
Bsu15I ATCGAT 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 345
BtsCI GGATG 3 cut(s) 567, 703, 723
Cac8I GCNNGC 1 cut(s) 493
CaiI CAGNNNCTG 1 cut(s) 662
Cfr13I GGNCC 1 cut(s) 371
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 350
CviAII CATG 2 cut(s) 764, 883
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 8 cut(s) 63, 177, 245, 399, 441, 446, 830, 870
DpnI GATC 6 cut(s) 117, 161, 219, 327, 574, 825
DpnII GATC 6 cut(s) 115, 159, 217, 325, 572, 823
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 604
Eco32I GATATC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 2 cut(s) 144, 573
EcoRII CCWGG 2 cut(s) 373, 409
EcoRV GATATC 1 cut(s) 257
FaeI CATG 2 cut(s) 767, 886
FatI CATG 2 cut(s) 763, 882
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 8 cut(s) 269, 396, 654, 657, 660, 663, 666, 863
FokI GGATG 3 cut(s) 574, 710, 730
Fsp4HI GCNGC 8 cut(s) 269, 396, 654, 657, 660, 663, 666, 863
FspBI CTAG 9 cut(s) 119, 284, 329, 360, 462, 492, 618, 630, 843
GluI GCNGC 8 cut(s) 269, 396, 654, 657, 660, 663, 666, 863
HgaI GACGC 1 cut(s) 74
Hin1II CATG 2 cut(s) 767, 886
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 4 cut(s) 42, 59, 181, 273
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 5 cut(s) 64, 106, 186, 392, 553
Hpy188III TCNNGA 3 cut(s) 215, 329, 440
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 5 cut(s) 185, 326, 548, 604, 778
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 442, 451, 659, 662, 665
HpyF3I CTNAG 8 cut(s) 63, 177, 245, 399, 441, 446, 830, 870
Hsp92II CATG 2 cut(s) 767, 886
Kzo9I GATC 6 cut(s) 115, 159, 217, 325, 572, 823
LmnI GCTCC 3 cut(s) 265, 392, 650
LpnPI CCDG 8 cut(s) 65, 232, 360, 387, 396, 423, 453, 789
Lsp1109I GCAGC 6 cut(s) 382, 640, 646, 649, 668, 874
LweI GCATC 3 cut(s) 21, 110, 478
MaeI CTAG 9 cut(s) 119, 284, 329, 360, 462, 492, 618, 630, 843
MaeIII GTNAC 3 cut(s) 290, 335, 383
MalI GATC 6 cut(s) 117, 161, 219, 327, 574, 825
MbiI CCGCTC 1 cut(s) 268
MboI GATC 6 cut(s) 115, 159, 217, 325, 572, 823
MflI RGATCY 4 cut(s) 115, 217, 325, 823
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 147, 295, 752
MmeI TCCRAC 3 cut(s) 519, 628, 786
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 106
MspA1I CMGCKG 1 cut(s) 659
MspR9I CCNGG 2 cut(s) 375, 411
MvaI CCWGG 2 cut(s) 375, 411
MwoI GCNNNNNNNGC 6 cut(s) 82, 442, 451, 659, 662, 665
NdeII GATC 6 cut(s) 115, 159, 217, 325, 572, 823
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 2 cut(s) 767, 886
NmuCI GTSAC 1 cut(s) 290
PfeI GAWTC 4 cut(s) 42, 59, 181, 273
PkrI GCNGC 8 cut(s) 270, 397, 655, 658, 661, 664, 667, 864
Psp6I CCWGG 2 cut(s) 373, 409
PspGI CCWGG 2 cut(s) 373, 409
PspPI GGNCC 1 cut(s) 371
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 4 cut(s) 115, 217, 325, 823
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 8 cut(s) 269, 396, 654, 657, 660, 663, 666, 863
Sau3AI GATC 6 cut(s) 115, 159, 217, 325, 572, 823
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 375, 411
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 3 cut(s) 21, 110, 478
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 3 cut(s) 147, 295, 752
SsiI CCGC 3 cut(s) 268, 589, 665
SspI AATATT 1 cut(s) 892
SspMI CTAG 9 cut(s) 119, 284, 329, 360, 462, 492, 618, 630, 843
StyD4I CCNGG 2 cut(s) 373, 409
TaaI ACNGT 1 cut(s) 27
TaqI TCGA 5 cut(s) 29, 88, 214, 302, 345
TasI AATT 3 cut(s) 147, 295, 752
TauI GCSGC 2 cut(s) 271, 668
TfiI GAWTC 4 cut(s) 42, 59, 181, 273
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 6 cut(s) 395, 653, 656, 659, 662, 862
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 5 cut(s) 27, 34, 531, 752, 884
TspGWI ACGGA 2 cut(s) 338, 759
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 147, 752
XbaI TCTAGA 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 9 cut(s) 119, 284, 329, 360, 462, 492, 618, 630, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.