Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006322

Physical Location & Seq

Genomic Coordinates Reverse (-)

8527952 .. 8531168

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G048200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTCGTAACGAAGAGAAAGCGCAGTCGATGCTCAATCGATTCATCACACTCAAAGCCGAAGAGAAGAAGAAGCCAAAAGAGCGACGTCCATACCTGGCCTCCGAATGCCGGGACCTTGCCGAGGCCTCCAAATGGAGGCAGCAAATCATGGGAGAGATTGGCCGAAAAGTCGCCGAGATCCAAAACGAAGGGCTCGGCGAGCACCGTCTCCGCGACCTCAACGACGAGATCAACAAGCTCATACGGGAGAAGGTTCACTGGGAACGACGAATTGTTGAGCTCGGAGGCCCTAACTATGCGAAACACGCCCCTAAGATGACGGACCTCGATGGCAACATCATCGACGTCCCAAACCCTAGCGGCCGAGGCCCTGGGTATCGGTATTTCGGCGCGGCGAAGAAGTTGCCGGGAGTCAGAGAGCTTTTCGAGAAGCCACCGGAGCTGAGAAAGCGGAGGACGAGGTACGATATATACAAAAGGATTGATGCGAGCTATTATGGGTATAGGGACGATGAGGATGGGGTTCTGGAGAAGGTTGAGGCTCTGGCGGAGGAGAAAATGAGAGCGGAGGCCGTGGCGGAGTGGAAACGGATGGAGGAGATAAGGAAAGAGGCACGGAGGGCTGTGAAGAGTGGGGAGGTGGTGTCGGTGGCGAAGGCGAAGGAGGTTTTGTTTGAAGAGGAAGAAGAGGTGGTTGAGGAGGAGAGGCAGAGAGAAAGGGAATTACAAGAGAGGAGTGAGAGGGAGAAAGAGTTTGTGGTGCACGTGCCCTTGCCAGACGATAAGGAGATTGAGAAGATGGTGCTGGAGAAGAAGAAGAAGGAGCTGCTGAGCAAGTATACTAGTGATGGATTGTTGGAGGAGCAGACTGAGGCCAAGCAGATGCTTAACATTCAGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Isy1

Protein Analysis

302

Amino Acids

35.45

Weight (kDa)

6.98

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18790
fragaria_vesca	FvH4_4g12620 FvH4_4g12620
malus_domestica	MD12G1216200.v1.1
prunus_persica	Prupe.6G322400_v2.0.a1 Prupe.7G048200_v2.0.a1 Prupe.7G048200_v2.0.a1
pyrus_communis	pycom04g17830 pycom12g20170
rosa_chinensis	RchiOBHm_Chr4g0411521
rosa_laevigata	RLG00000002170 RLG00000008349
rosa_multiflora	Rmu_co8341187.1_g000001 Rmu_sc0024225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238560 Rroxscaffold_5G00356090
rosa_rugosa	Rorug04G0108200 Rorug04G0108300 Rorug04G0108400
rosa_samantha	Rh4AG168700 Rh4BG165200 Rh4CG180000 Rh4DG163000 Rh7AG342900 Rh7CG360500
rosa_wichuraiana	Rw0G020800 Rw4G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	91, 351
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	842
AccII	CGCG	2 cut(s)	216, 395
AciI	CCGC	7 cut(s)	214, 363, 395, 454, 551, 569, 581
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	2 cut(s)	163, 364
AcvI	CACGTG	1 cut(s)	769
AcyI	GRCGYC	2 cut(s)	88, 348
AfaI	GTAC	1 cut(s)	467
AfeI	AGCGCT	1 cut(s)	902
AfiI	CCNNNNNNNGG	4 cut(s)	111, 124, 135, 138
AgsI	TTSAA	1 cut(s)	680
AhlI	ACTAGT	1 cut(s)	845
AjnI	CCWGG	2 cut(s)	96, 373
AluBI	AGCT	6 cut(s)	241, 283, 424, 445, 495, 829
AluI	AGCT	6 cut(s)	241, 283, 424, 445, 495, 829
Alw21I	GWGCWC	3 cut(s)	207, 285, 768
Alw26I	GTCTC	1 cut(s)	215
Alw44I	GTGCAC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	902
AoxI	GGCC	8 cut(s)	99, 126, 163, 289, 364, 370, 573, 876
ApaLI	GTGCAC	1 cut(s)	764
ApeKI	GCWGC	2 cut(s)	142, 829
AspLEI	GCGC	3 cut(s)	25, 395, 903
AspS9I	GGNCC	4 cut(s)	115, 290, 325, 371
AsuC2I	CCSGG	2 cut(s)	113, 411
AvaII	GGWCC	2 cut(s)	115, 325
BaeGI	GKGCMC	2 cut(s)	768, 774
BanII	GRGCYC	2 cut(s)	198, 285
BbrPI	CACGTG	1 cut(s)	769
Bbv12I	GWGCWC	3 cut(s)	207, 285, 768
BbvI	GCAGC	2 cut(s)	154, 816
BccI	CCATC	5 cut(s)	326, 515, 589, 796, 845
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 388, 422
BciT130I	CCWGG	2 cut(s)	98, 375
BcnI	CCSGG	2 cut(s)	113, 411
BcoDI	GTCTC	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	845
BfaI	CTAG	3 cut(s)	360, 846, 904
BfoI	RGCGCY	1 cut(s)	904
BisI	GCNGC	4 cut(s)	143, 364, 396, 830
BlpI	GCTNAGC	1 cut(s)	833
BlsI	GCNGC	4 cut(s)	144, 365, 397, 831
Bme1390I	CCNGG	4 cut(s)	98, 113, 375, 411
Bme18I	GGWCC	2 cut(s)	115, 325
BmgT120I	GGNCC	4 cut(s)	115, 290, 325, 371
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	4 cut(s)	98, 113, 375, 411
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	3 cut(s)	21, 478, 876
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	2 cut(s)	551, 830
Bpu1102I	GCTNAGC	1 cut(s)	833
BpuMI	CCSGG	2 cut(s)	113, 411
Bsa29I	ATCGAT	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	769
BsaHI	GRCGYC	2 cut(s)	88, 348
BsaJI	CCNNGG	5 cut(s)	123, 367, 373, 374, 576
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	8 cut(s)	86, 116, 632, 659, 662, 689, 740, 770
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 124, 135, 138
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	98, 375
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	5 cut(s)	123, 367, 373, 374, 576
BseGI	GGATG	2 cut(s)	526, 600
BseLI	CCNNNNNNNGG	4 cut(s)	111, 124, 135, 138
BseMII	CTCAG	3 cut(s)	437, 824, 864
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	6 cut(s)	569, 614, 716, 719, 751, 878
BseSI	GKGCMC	2 cut(s)	768, 774
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	154, 816
Bsh1236I	CGCG	2 cut(s)	216, 395
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	8 cut(s)	101, 128, 165, 291, 366, 372, 575, 878
BshVI	ATCGAT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	3 cut(s)	207, 285, 768
BsiSI	CCGG	3 cut(s)	112, 410, 440
BslFI	GGGAC	3 cut(s)	128, 335, 524
BslI	CCNNNNNNNGG	4 cut(s)	111, 124, 135, 138
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	3 cut(s)	128, 335, 524
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	8 cut(s)	101, 128, 165, 291, 366, 372, 575, 878
Bsp1286I	GDGCHC	5 cut(s)	198, 207, 285, 768, 774
Bsp143I	GATC	2 cut(s)	180, 231
Bsp1720I	GCTNAGC	1 cut(s)	833
BspACI	CCGC	7 cut(s)	214, 363, 395, 454, 551, 569, 581
BspANI	GGCC	8 cut(s)	101, 128, 165, 291, 366, 372, 575, 878
BspCNI	CTCAG	3 cut(s)	438, 825, 865
BspDI	ATCGAT	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	216, 395
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	5 cut(s)	123, 367, 373, 374, 576
BssMI	GATC	2 cut(s)	180, 231
BssNAI	GTATAC	1 cut(s)	843
BssNI	GRCGYC	2 cut(s)	88, 348
Bst1107I	GTATAC	1 cut(s)	843
Bst2UI	CCWGG	2 cut(s)	98, 375
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	5 cut(s)	9, 57, 626, 675, 684
BstACI	GRCGYC	2 cut(s)	88, 348
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	769
BstC8I	GCNNGC	2 cut(s)	203, 493
BstDEI	CTNAG	4 cut(s)	315, 446, 833, 873
BstDSI	CCRYGG	1 cut(s)	576
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	526, 600
BstFNI	CGCG	2 cut(s)	216, 395
BstH2I	RGCGCY	1 cut(s)	904
BstHHI	GCGC	3 cut(s)	25, 395, 903
BstKTI	GATC	2 cut(s)	183, 234
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	180, 231
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 82, 202, 308, 369, 442, 451, 623
BstNI	CCWGG	2 cut(s)	98, 375
BstSCI	CCNGG	4 cut(s)	96, 111, 373, 409
BstSLI	GKGCMC	2 cut(s)	768, 774
BstUI	CGCG	2 cut(s)	216, 395
BstV1I	GCAGC	2 cut(s)	154, 816
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZ17I	GTATAC	1 cut(s)	843
BstZI	CGGCCG	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	8 cut(s)	101, 128, 165, 291, 366, 372, 575, 878
BsuTUI	ATCGAT	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	526, 600
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	203, 493
CfoI	GCGC	3 cut(s)	25, 395, 903
Cfr13I	GGNCC	4 cut(s)	115, 290, 325, 371
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	4 cut(s)	315, 446, 833, 873
DpnI	GATC	2 cut(s)	182, 233
DpnII	GATC	2 cut(s)	180, 231
EaeI	YGGCCR	2 cut(s)	163, 364
EagI	CGGCCG	1 cut(s)	364
Eam1104I	CTCTTC	5 cut(s)	9, 57, 626, 675, 684
EarI	CTCTTC	5 cut(s)	9, 57, 626, 675, 684
EciI	GGCGGA	2 cut(s)	566, 596
Ecl136II	GAGCTC	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	2 cut(s)	198, 285
Eco47I	GGWCC	2 cut(s)	115, 325
Eco47III	AGCGCT	1 cut(s)	902
Eco52I	CGGCCG	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoO109I	RGGNCCY	3 cut(s)	115, 290, 371
EcoRII	CCWGG	2 cut(s)	96, 373
EcoT38I	GRGCYC	2 cut(s)	198, 285
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	154
FaiI	YATR	9 cut(s)	94, 152, 245, 300, 473, 475, 501, 507, 843
FaqI	GGGAC	3 cut(s)	128, 335, 524
FatI	CATG	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	842
Fnu4HI	GCNGC	4 cut(s)	143, 364, 396, 830
FokI	GGATG	2 cut(s)	533, 607
FriOI	GRGCYC	2 cut(s)	198, 285
Fsp4HI	GCNGC	4 cut(s)	143, 364, 396, 830
FspBI	CTAG	3 cut(s)	360, 846, 904
GlaI	GCGC	3 cut(s)	24, 394, 902
GluI	GCNGC	4 cut(s)	143, 364, 396, 830
GsuI	CTGGAG	2 cut(s)	551, 830
HaeII	RGCGCY	1 cut(s)	904
HaeIII	GGCC	8 cut(s)	101, 128, 165, 291, 366, 372, 575, 878
HapII	CCGG	3 cut(s)	112, 410, 440
HhaI	GCGC	3 cut(s)	25, 395, 903
Hin1I	GRCGYC	2 cut(s)	88, 348
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	3 cut(s)	23, 393, 901
HinP1I	GCGC	3 cut(s)	23, 393, 901
HinfI	GANTC	2 cut(s)	42, 414
HpaII	CCGG	3 cut(s)	112, 410, 440
Hpy166II	GTNNAC	3 cut(s)	259, 766, 843
Hpy188I	TCNGA	3 cut(s)	106, 287, 419
Hpy188III	TCNNGA	2 cut(s)	430, 530
Hpy8I	GTNNAC	3 cut(s)	259, 766, 843
Hpy99I	CGWCG	4 cut(s)	90, 230, 273, 350
HpyAV	CCTTC	6 cut(s)	185, 247, 529, 652, 658, 817
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	3 cut(s)	88, 348, 768
HpyCH4V	TGCA	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 82, 202, 308, 369, 442, 451, 623
HpyF3I	CTNAG	4 cut(s)	315, 446, 833, 873
HpySE526I	ACGT	3 cut(s)	88, 348, 768
Hsp92I	GRCGYC	2 cut(s)	88, 348
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	3 cut(s)	23, 393, 901
Kzo9I	GATC	2 cut(s)	180, 231
LmnI	GCTCC	3 cut(s)	442, 826, 865
Lsp1109I	GCAGC	2 cut(s)	154, 816
LweI	GCATC	3 cut(s)	21, 478, 876
MaeI	CTAG	3 cut(s)	360, 846, 904
MaeII	ACGT	3 cut(s)	88, 348, 768
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	182, 233
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	2 cut(s)	180, 231
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	5 cut(s)	198, 207, 285, 768, 774
MluCI	AATT	2 cut(s)	273, 725
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	840
MseI	TTAA	1 cut(s)	891
MspI	CCGG	3 cut(s)	112, 410, 440
MspR9I	CCNGG	4 cut(s)	98, 113, 375, 411
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	2 cut(s)	98, 375
MvnI	CGCG	2 cut(s)	216, 395
MwoI	GCNNNNNNNGC	8 cut(s)	31, 82, 202, 308, 369, 442, 451, 623
NciI	CCSGG	2 cut(s)	113, 411
NdeII	GATC	2 cut(s)	180, 231
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	4 cut(s)	148, 177, 202, 392
PasI	CCCWGGG	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	144, 365, 397, 831
PleI	GAGTC	1 cut(s)	422
PmaCI	CACGTG	1 cut(s)	769
PmlI	CACGTG	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	769
PpuMI	RGGWCCY	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	96, 373
PspCI	CACGTG	1 cut(s)	769
PspGI	CCWGG	2 cut(s)	96, 373
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	4 cut(s)	115, 290, 325, 371
PspPPI	RGGWCCY	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	891
SatI	GCNGC	4 cut(s)	143, 364, 396, 830
Sau3AI	GATC	2 cut(s)	180, 231
Sau96I	GGNCC	4 cut(s)	115, 290, 325, 371
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	4 cut(s)	98, 113, 375, 411
SduI	GDGCHC	5 cut(s)	198, 207, 285, 768, 774
SfaNI	GCATC	3 cut(s)	21, 478, 876
SinI	GGWCC	2 cut(s)	115, 325
SpeI	ACTAGT	1 cut(s)	845
Sse9I	AATT	2 cut(s)	273, 725
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	7 cut(s)	214, 363, 395, 454, 551, 569, 581
SspMI	CTAG	3 cut(s)	360, 846, 904
SstI	GAGCTC	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	4 cut(s)	96, 111, 373, 409
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	3 cut(s)	91, 351, 771
TaqI	TCGA	5 cut(s)	29, 40, 330, 345, 429
TasI	AATT	2 cut(s)	273, 725
TauI	GCSGC	2 cut(s)	366, 398
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	891
Tru9I	TTAA	1 cut(s)	891
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	2 cut(s)	142, 829
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	3 cut(s)	338, 607, 634
TspRI	CASTG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	115, 325
XagI	CCTNNNNNAGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	842
XspI	CTAG	3 cut(s)	360, 846, 904
ZraI	GACGTC	2 cut(s)	89, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.