Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006322

Physical Location & Seq

Genomic Coordinates Forward (+)

28447585 .. 28448413

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G322400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTCGTAACGAAGAGAAAGCGCATTCAATGCTCAATCGATTCATCACACTCAAAGCCGAAGAGAAGAAGAAGCCAAAAGAGCGACGCCCATACCTGGCCTCCGAATGCCGAGACCTCGCCGAGGCCTCCAAAAGGCGGCAGCAAATCATGGGAGAGATTGTCGCCGAGATCCAAAACGAAGAGCTCGGCGAGCACCGTCTCCGCGACCTCAACGACGAGATCAACAAGCTCATACGAGAGAAAGTTCACTGGGAACGACGAATTGTTGAGCTCGGAGGTCCTAACTACGCGAAACACGCCCCTAAGATGACGGACCTCGATGGCAACATCATCAACGTCCCAAACACTAGCGGCCGCGGCCCTGGGTATCGGTATTTCGGCGCGGCGAAGAAGTTGCGGGGAGTCAGAGAGCTTTTCGAGAAGCCGCCGGAGCTGAGAAAGCGGAGGACGAGGTACGATATATACAAAAGGATAGATGCGAGCTATTATGGGTATAGAGACGATGAGGATGGGGTTCTGGAGAAGGTTGAGGCTCCGGCGGAGTGGAAACGGATGGAGGAGATAAGGAAAGAGGCAAGGAGGGCGGTGAAGAGTGGGGAGGTGGTGTCGGTGGCCAAGGCGAAGGAGGAGATTGAGAAGATGGTGCTGGAGAAGAAGAAGAAGGAGCTGCTGAGCAAGTATACTAGTGATGGATTGTTGGAGGAGCAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Isy1

Protein Analysis

239

Amino Acids

27.9

Weight (kDa)

9.37

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18790
fragaria_vesca	FvH4_4g12620 FvH4_4g12620
malus_domestica	MD12G1216200.v1.1
prunus_persica	Prupe.6G322400_v2.0.a1 Prupe.7G048200_v2.0.a1 Prupe.7G048200_v2.0.a1
pyrus_communis	pycom04g17830 pycom12g20170
rosa_chinensis	RchiOBHm_Chr4g0411521
rosa_laevigata	RLG00000002170 RLG00000008349
rosa_multiflora	Rmu_co8341187.1_g000001 Rmu_sc0024225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238560 Rroxscaffold_5G00356090
rosa_rugosa	Rorug04G0108200 Rorug04G0108300 Rorug04G0108400
rosa_samantha	Rh4AG168700 Rh4BG165200 Rh4CG180000 Rh4DG163000 Rh7AG342900 Rh7CG360500
rosa_wichuraiana	Rw0G020800 Rw4G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	4 cut(s)	207, 293, 360, 386
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	2 cut(s)	355, 615
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	4 cut(s)	97, 124, 135, 138
AgsI	TTSAA	1 cut(s)	30
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	96, 364
AluBI	AGCT	7 cut(s)	187, 232, 274, 415, 436, 486, 670
AluI	AGCT	7 cut(s)	187, 232, 274, 415, 436, 486, 670
Alw21I	GWGCWC	3 cut(s)	189, 198, 276
Alw26I	GTCTC	3 cut(s)	108, 206, 495
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	5 cut(s)	99, 126, 355, 361, 615
ApeKI	GCWGC	2 cut(s)	142, 670
AspLEI	GCGC	2 cut(s)	25, 386
AspS9I	GGNCC	3 cut(s)	281, 316, 362
AsuHPI	GGTGA	1 cut(s)	601
AvaII	GGWCC	2 cut(s)	281, 316
BalI	TGGCCA	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	189, 276
Bbv12I	GWGCWC	3 cut(s)	189, 198, 276
BbvI	GCAGC	2 cut(s)	154, 657
BccI	CCATC	5 cut(s)	317, 506, 550, 637, 686
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	2 cut(s)	98, 366
BcoDI	GTCTC	3 cut(s)	108, 206, 495
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	2 cut(s)	351, 687
BisI	GCNGC	8 cut(s)	140, 143, 355, 358, 361, 387, 428, 671
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	8 cut(s)	141, 144, 356, 359, 362, 388, 429, 672
Bme1390I	CCNGG	2 cut(s)	98, 366
Bme18I	GGWCC	2 cut(s)	281, 316
BmgT120I	GGNCC	3 cut(s)	281, 316, 362
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	2 cut(s)	98, 366
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	469
BmuI	ACTGGG	1 cut(s)	262
BpmI	CTGGAG	2 cut(s)	542, 671
Bpu1102I	GCTNAGC	1 cut(s)	674
Bsa29I	ATCGAT	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	5 cut(s)	123, 358, 364, 365, 618
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 147, 177, 593, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 124, 135, 138
Bse1I	ACTGG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	98, 366
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	5 cut(s)	123, 358, 364, 365, 618
BseGI	GGATG	2 cut(s)	517, 561
BseLI	CCNNNNNNNGG	4 cut(s)	97, 124, 135, 138
BseMII	CTCAG	2 cut(s)	428, 665
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	575, 644
BseX3I	CGGCCG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	154, 657
Bsh1236I	CGCG	4 cut(s)	207, 293, 360, 386
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	5 cut(s)	101, 128, 357, 363, 617
BshVI	ATCGAT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	3 cut(s)	189, 198, 276
BsiSI	CCGG	2 cut(s)	431, 539
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	4 cut(s)	97, 124, 135, 138
BsmAI	GTCTC	3 cut(s)	108, 206, 495
BsmBI	CGTCTC	2 cut(s)	206, 495
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	2 cut(s)	25, 113
BsnI	GGCC	5 cut(s)	101, 128, 357, 363, 617
Bso31I	GGTCTC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	189, 198, 276
Bsp143I	GATC	2 cut(s)	171, 222
Bsp1720I	GCTNAGC	1 cut(s)	674
BspANI	GGCC	5 cut(s)	101, 128, 357, 363, 617
BspCNI	CTCAG	2 cut(s)	429, 666
BspDI	ATCGAT	1 cut(s)	40
BspFNI	CGCG	4 cut(s)	207, 293, 360, 386
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	5 cut(s)	123, 358, 364, 365, 618
BssMI	GATC	2 cut(s)	171, 222
BssNAI	GTATAC	1 cut(s)	684
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	618
Bst1107I	GTATAC	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	98, 366
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	4 cut(s)	9, 57, 177, 587
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	194, 484
BstDEI	CTNAG	3 cut(s)	306, 437, 674
BstDSI	CCRYGG	1 cut(s)	358
BstENI	CCTNNNNNAGG	2 cut(s)	122, 133
BstF5I	GGATG	2 cut(s)	517, 561
BstFNI	CGCG	4 cut(s)	207, 293, 360, 386
BstHHI	GCGC	2 cut(s)	25, 386
BstKTI	GATC	2 cut(s)	174, 225
BstMAI	GTCTC	3 cut(s)	108, 206, 495
BstMBI	GATC	2 cut(s)	171, 222
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 82, 193, 299, 360, 433, 442, 584
BstNI	CCWGG	2 cut(s)	98, 366
BstSCI	CCNGG	2 cut(s)	96, 364
BstUI	CGCG	4 cut(s)	207, 293, 360, 386
BstV1I	GCAGC	2 cut(s)	154, 657
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BstZ17I	GTATAC	1 cut(s)	684
BstZI	CGGCCG	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	5 cut(s)	101, 128, 357, 363, 617
BsuTUI	ATCGAT	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	517, 561
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	194, 484
CciNI	GCGGCCGC	1 cut(s)	355
CfoI	GCGC	2 cut(s)	25, 386
Cfr13I	GGNCC	3 cut(s)	281, 316, 362
Cfr42I	CCGCGG	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	40
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	3 cut(s)	306, 437, 674
DpnI	GATC	2 cut(s)	173, 224
DpnII	GATC	2 cut(s)	171, 222
EaeI	YGGCCR	2 cut(s)	355, 615
EagI	CGGCCG	1 cut(s)	355
Eam1104I	CTCTTC	4 cut(s)	9, 57, 177, 587
EarI	CTCTTC	4 cut(s)	9, 57, 177, 587
EciI	GGCGGA	1 cut(s)	557
Ecl136II	GAGCTC	2 cut(s)	187, 274
EclXI	CGGCCG	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	618
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	2 cut(s)	189, 276
Eco31I	GGTCTC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	281, 316
Eco52I	CGGCCG	1 cut(s)	355
Eco53kI	GAGCTC	2 cut(s)	187, 274
EcoICRI	GAGCTC	2 cut(s)	187, 274
EcoNI	CCTNNNNNAGG	2 cut(s)	122, 133
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	96, 364
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	2 cut(s)	189, 276
ErhI	CCWWGG	1 cut(s)	618
Esp3I	CGTCTC	2 cut(s)	206, 495
FaeI	CATG	1 cut(s)	154
FaiI	YATR	8 cut(s)	94, 152, 236, 464, 466, 492, 498, 684
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	150
FauI	CCCGC	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	8 cut(s)	140, 143, 355, 358, 361, 387, 428, 671
FokI	GGATG	2 cut(s)	524, 568
FriOI	GRGCYC	2 cut(s)	189, 276
Fsp4HI	GCNGC	8 cut(s)	140, 143, 355, 358, 361, 387, 428, 671
FspBI	CTAG	2 cut(s)	351, 687
GlaI	GCGC	2 cut(s)	24, 385
GluI	GCNGC	8 cut(s)	140, 143, 355, 358, 361, 387, 428, 671
GsuI	CTGGAG	2 cut(s)	542, 671
HaeIII	GGCC	5 cut(s)	101, 128, 357, 363, 617
HapII	CCGG	2 cut(s)	431, 539
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	25, 386
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	2 cut(s)	23, 384
HinP1I	GCGC	2 cut(s)	23, 384
HinfI	GANTC	2 cut(s)	42, 405
HpaII	CCGG	2 cut(s)	431, 539
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	2 cut(s)	250, 684
Hpy188I	TCNGA	3 cut(s)	106, 278, 410
Hpy188III	TCNNGA	2 cut(s)	421, 521
Hpy8I	GTNNAC	2 cut(s)	250, 684
Hpy99I	CGWCG	3 cut(s)	90, 221, 264
HpyAV	CCTTC	3 cut(s)	520, 619, 658
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 82, 193, 299, 360, 433, 442, 584
HpyF3I	CTNAG	3 cut(s)	306, 437, 674
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	2 cut(s)	23, 384
KspI	CCGCGG	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	171, 222
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	4 cut(s)	433, 541, 667, 706
LpnPI	CCDG	9 cut(s)	83, 110, 238, 351, 378, 444, 506, 552, 635
Lsp1109I	GCAGC	2 cut(s)	154, 657
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	351, 687
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	173, 224
MboI	GATC	2 cut(s)	171, 222
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	3 cut(s)	189, 198, 276
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	1 cut(s)	264
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	681
Mox20I	TGGCCA	1 cut(s)	617
MscI	TGGCCA	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	2 cut(s)	431, 539
MspR9I	CCNGG	2 cut(s)	98, 366
Mva1269I	GAATGC	2 cut(s)	25, 113
MvaI	CCWGG	2 cut(s)	98, 366
MvnI	CGCG	4 cut(s)	207, 293, 360, 386
MwoI	GCNNNNNNNGC	8 cut(s)	31, 82, 193, 299, 360, 433, 442, 584
NdeII	GATC	2 cut(s)	171, 222
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	537
NmeAIII	GCCGAG	4 cut(s)	137, 148, 168, 193
NotI	GCGGCCGC	1 cut(s)	355
PasI	CCCWGGG	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	2 cut(s)	25, 113
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	8 cut(s)	141, 144, 356, 359, 362, 388, 429, 672
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	281
Psp124BI	GAGCTC	2 cut(s)	189, 276
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	96, 364
PspGI	CCWGG	2 cut(s)	96, 364
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	3 cut(s)	281, 316, 362
PspPPI	RGGWCCY	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	2 cut(s)	189, 276
SacII	CCGCGG	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	8 cut(s)	140, 143, 355, 358, 361, 387, 428, 671
Sau3AI	GATC	2 cut(s)	171, 222
Sau96I	GGNCC	3 cut(s)	281, 316, 362
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	2 cut(s)	98, 366
SduI	GDGCHC	3 cut(s)	189, 198, 276
SfaNI	GCATC	1 cut(s)	469
Sfr303I	CCGCGG	1 cut(s)	361
SgrBI	CCGCGG	1 cut(s)	361
SinI	GGWCC	2 cut(s)	281, 316
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	1 cut(s)	264
SseBI	AGGCCT	1 cut(s)	128
SspMI	CTAG	2 cut(s)	351, 687
SstI	GAGCTC	2 cut(s)	189, 276
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	96, 364
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	40, 321, 420
TasI	AATT	1 cut(s)	264
TauI	GCSGC	6 cut(s)	142, 357, 360, 363, 389, 430
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	2 cut(s)	142, 670
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	2 cut(s)	329, 568
TspRI	CASTG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	281, 316
XagI	CCTNNNNNAGG	2 cut(s)	122, 133
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	2 cut(s)	351, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.