Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006322

Physical Location & Seq

Genomic Coordinates Forward (+)

20057088 .. 20057995

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTCGTAACGAAGAGAAAGCGCAGTCGATGCTCAATCGGTTCATTGCCCTCAAGGCCGAAGAGAAGAAGAAGCCAAAAGAACGACGCCCGTACCTCGCCTCCGAGTGCCGCGACCTCGCCGAGGCCTCCAGATGGAGGCAGCAAATCATGGGGGAGATCGCACCGGACCCGCGACCTCAACGACGATCGATCAACAAGCTGATTCGAGAGAAGGTACATTGGGAGCGGCGGATTGTGGAGCTCGGAGGCCCAAATTATGCCAAAAACGCCCCTAAGATGACCGACCTCGACGGTAATATTGTCGATGTTCCGAACCCTAGCGGCCGCGGCCCTGGGTATCGGTACTTTGGAGCGGCGAAGAAGCTGCCGGGAGTCAGAGAGCTTTTCGAGAAGCCGCCGGAGCTGAGAAAGCGGAGGACGAGGTATGATATATACAAGAGGATTGATGCTAGTTATTATGGGTATAGGGACGATGAGGATGGGATTTTGGAGAAGCTTGAGGTGGAGGCGGAGGAGAAGATGAGGGCAGAGGCGGTGGCGGAATGGAAGAGGATGGAGGAGATAAGGCGTGAAGCGAGGAGGGCGGTGAAGAGCGGGGAGGTGGTGTCAGCGGCAAAGGTGAAGGAGGTATTGTTTGAGGAGGAAGAGGAGGTGGTGGAGGAGGAGAGGCAGAGAGAGAGGGAATTGAAAGAGAGGAGTGAGCAGGAGAGGGAGTTCGTGGTGCACGTGCCGCTGCCAGATGATAAGGAGATTGAGAAGATGGTGCTGGAGAAGAAGAAGAGGGAGCTGCTGAGCAAGTATACCAGTGATGAATTGATGGAGGAGCAGTCCGAGGCGAAGGAGATGCTTAACATTAAGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Isy1

Protein Analysis

289

Amino Acids

34.15

Weight (kDa)

8.35

Isoelectric Point (pI)

69.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isy1	PF06246	1 - 55	3.5e-19	Isy1-like splicing family
Isy1	PF06246	64 - 267	5.4e-53	Isy1-like splicing family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18790
fragaria_vesca	FvH4_4g12620 FvH4_4g12620
malus_domestica	MD12G1216200.v1.1
prunus_persica	Prupe.6G322400_v2.0.a1 Prupe.7G048200_v2.0.a1 Prupe.7G048200_v2.0.a1
pyrus_communis	pycom04g17830 pycom12g20170
rosa_chinensis	RchiOBHm_Chr4g0411521
rosa_laevigata	RLG00000002170 RLG00000008349
rosa_multiflora	Rmu_co8341187.1_g000001 Rmu_sc0024225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238560 Rroxscaffold_5G00356090
rosa_rugosa	Rorug04G0108200 Rorug04G0108300 Rorug04G0108400
rosa_samantha	Rh4AG168700 Rh4BG165200 Rh4CG180000 Rh4DG163000 Rh7AG342900 Rh7CG360500
rosa_wichuraiana	Rw0G020800 Rw4G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	229, 356, 597
AccI	GTMKAC	1 cut(s)	803
AccII	CGCG	3 cut(s)	114, 175, 330
AcoI	YGGCCR	1 cut(s)	325
AcvI	CACGTG	1 cut(s)	730
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	3 cut(s)	95, 219, 347
AfeI	AGCGCT	1 cut(s)	863
AfiI	CCNNNNNNNGG	3 cut(s)	124, 135, 138
AgsI	TTSAA	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	334
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	7 cut(s)	202, 244, 367, 385, 406, 499, 790
AluI	AGCT	7 cut(s)	202, 244, 367, 385, 406, 499, 790
Alw21I	GWGCWC	2 cut(s)	246, 729
Alw44I	GTGCAC	1 cut(s)	725
Aor51HI	AGCGCT	1 cut(s)	863
AoxI	GGCC	5 cut(s)	57, 126, 250, 325, 331
ApaLI	GTGCAC	1 cut(s)	725
ApeKI	GCWGC	4 cut(s)	142, 367, 736, 790
AspLEI	GCGC	2 cut(s)	25, 864
AspS9I	GGNCC	3 cut(s)	169, 251, 332
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	601, 634
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	729
BaeI	ACNNNNGTAYC	2 cut(s)	77, 110
BanII	GRGCYC	1 cut(s)	246
BbrPI	CACGTG	1 cut(s)	730
Bbv12I	GWGCWC	2 cut(s)	246, 729
BbvI	GCAGC	4 cut(s)	154, 354, 723, 777
BccI	CCATC	5 cut(s)	129, 476, 550, 757, 814
BcgI	CGANNNNNNTGC	4 cut(s)	349, 383, 829, 863
BciT130I	CCWGG	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	372
BfaI	CTAG	3 cut(s)	321, 453, 865
BfoI	RGCGCY	1 cut(s)	865
BglI	GCCNNNNNGGC	1 cut(s)	56
BlpI	GCTNAGC	1 cut(s)	794
Bme1390I	CCNGG	2 cut(s)	336, 372
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	169, 251, 332
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	336, 372
BmsI	GCATC	3 cut(s)	21, 439, 837
BpmI	CTGGAG	2 cut(s)	115, 791
Bpu1102I	GCTNAGC	1 cut(s)	794
BpuEI	CTTGAG	2 cut(s)	38, 521
BpuMI	CCSGG	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	730
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	5 cut(s)	123, 328, 334, 335, 834
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 135, 138
Bse1I	ACTGG	1 cut(s)	807
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	5 cut(s)	123, 328, 334, 335, 834
BseGI	GGATG	2 cut(s)	487, 561
BseLI	CCNNNNNNNGG	3 cut(s)	124, 135, 138
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	398, 785
BseNI	ACTGG	1 cut(s)	807
BseRI	GAGGAG	9 cut(s)	530, 575, 595, 656, 665, 677, 680, 712, 839
BseSI	GKGCMC	1 cut(s)	729
BseX3I	CGGCCG	1 cut(s)	325
BseXI	GCAGC	4 cut(s)	154, 354, 723, 777
Bsh1236I	CGCG	3 cut(s)	114, 175, 330
Bsh1285I	CGRYCG	2 cut(s)	191, 328
BshFI	GGCC	5 cut(s)	59, 128, 252, 327, 333
BshVI	ATCGAT	1 cut(s)	191
BsiEI	CGRYCG	2 cut(s)	191, 328
BsiHKAI	GWGCWC	2 cut(s)	246, 729
BsiSI	CCGG	3 cut(s)	167, 371, 401
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	124, 135, 138
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	5 cut(s)	59, 128, 252, 327, 333
Bsp1286I	GDGCHC	2 cut(s)	246, 729
Bsp143I	GATC	3 cut(s)	159, 188, 192
Bsp1720I	GCTNAGC	1 cut(s)	794
BspANI	GGCC	5 cut(s)	59, 128, 252, 327, 333
BspCNI	CTCAG	2 cut(s)	399, 786
BspDI	ATCGAT	1 cut(s)	191
BspFNI	CGCG	3 cut(s)	114, 175, 330
BspLI	GGNNCC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	587
BsrBI	CCGCTC	3 cut(s)	229, 356, 597
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	807
BssECI	CCNNGG	5 cut(s)	123, 328, 334, 335, 834
BssMI	GATC	3 cut(s)	159, 188, 192
BssNAI	GTATAC	1 cut(s)	804
BssNI	GRCGYC	1 cut(s)	88
Bst1107I	GTATAC	1 cut(s)	804
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	6 cut(s)	9, 57, 545, 587, 642, 776
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	730
BstDEI	CTNAG	3 cut(s)	276, 407, 794
BstDSI	CCRYGG	1 cut(s)	328
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	487, 561
BstFNI	CGCG	3 cut(s)	114, 175, 330
BstH2I	RGCGCY	1 cut(s)	865
BstHHI	GCGC	2 cut(s)	25, 864
BstKTI	GATC	3 cut(s)	162, 191, 195
BstMBI	GATC	3 cut(s)	159, 188, 192
BstMCI	CGRYCG	2 cut(s)	191, 328
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 56, 269, 330, 403, 412, 584, 733
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	334, 370
BstSLI	GKGCMC	1 cut(s)	729
BstUI	CGCG	3 cut(s)	114, 175, 330
BstV1I	GCAGC	4 cut(s)	154, 354, 723, 777
BstZ17I	GTATAC	1 cut(s)	804
BstZI	CGGCCG	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	191
BsuRI	GGCC	5 cut(s)	59, 128, 252, 327, 333
BsuTUI	ATCGAT	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	487, 561
BtsIMutI	CAGTG	1 cut(s)	814
CciNI	GCGGCCGC	1 cut(s)	325
CfoI	GCGC	2 cut(s)	25, 864
Cfr13I	GGNCC	3 cut(s)	169, 251, 332
Cfr42I	CCGCGG	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	191
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	94, 218, 346
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	3 cut(s)	94, 218, 346
DdeI	CTNAG	3 cut(s)	276, 407, 794
DpnI	GATC	3 cut(s)	161, 190, 194
DpnII	GATC	3 cut(s)	159, 188, 192
EaeI	YGGCCR	1 cut(s)	325
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	6 cut(s)	9, 57, 545, 587, 642, 776
EarI	CTCTTC	6 cut(s)	9, 57, 545, 587, 642, 776
EciI	GGCGGA	3 cut(s)	247, 527, 557
Ecl136II	GAGCTC	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	863
Eco52I	CGGCCG	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	154
FaiI	YATR	8 cut(s)	152, 261, 429, 434, 436, 462, 468, 804
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	1 cut(s)	150
FauI	CCCGC	2 cut(s)	180, 590
FblI	GTMKAC	1 cut(s)	803
FokI	GGATG	2 cut(s)	494, 568
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	3 cut(s)	321, 453, 865
GlaI	GCGC	2 cut(s)	24, 863
GsuI	CTGGAG	2 cut(s)	115, 791
HaeII	RGCGCY	1 cut(s)	865
HaeIII	GGCC	5 cut(s)	59, 128, 252, 327, 333
HapII	CCGG	3 cut(s)	167, 371, 401
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	25, 864
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	2 cut(s)	23, 862
HinP1I	GCGC	2 cut(s)	23, 862
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	205, 375
HpaII	CCGG	3 cut(s)	167, 371, 401
HphI	GGTGA	2 cut(s)	601, 634
Hpy166II	GTNNAC	2 cut(s)	727, 804
Hpy188I	TCNGA	5 cut(s)	106, 248, 315, 380, 835
Hpy188III	TCNNGA	3 cut(s)	132, 209, 391
Hpy8I	GTNNAC	2 cut(s)	727, 804
Hpy99I	CGWCG	3 cut(s)	90, 189, 296
HpyAV	CCTTC	3 cut(s)	208, 619, 835
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 56, 269, 330, 403, 412, 584, 733
HpyF3I	CTNAG	3 cut(s)	276, 407, 794
HpySE526I	ACGT	1 cut(s)	729
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	2 cut(s)	23, 862
KspI	CCGCGG	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	159, 188, 192
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	6 cut(s)	226, 241, 353, 403, 787, 826
Lsp1109I	GCAGC	4 cut(s)	154, 354, 723, 777
LweI	GCATC	3 cut(s)	21, 439, 837
MaeI	CTAG	3 cut(s)	321, 453, 865
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	161, 190, 194
MbiI	CCGCTC	3 cut(s)	229, 356, 597
MboI	GATC	3 cut(s)	159, 188, 192
MhlI	GDGCHC	2 cut(s)	246, 729
MluCI	AATT	3 cut(s)	256, 686, 815
MlyI	GAGTC	1 cut(s)	384
MseI	TTAA	2 cut(s)	852, 858
MspA1I	CMGCKG	3 cut(s)	330, 614, 736
MspI	CCGG	3 cut(s)	167, 371, 401
MspR9I	CCNGG	2 cut(s)	336, 372
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	3 cut(s)	114, 175, 330
MwoI	GCNNNNNNNGC	8 cut(s)	31, 56, 269, 330, 403, 412, 584, 733
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	159, 188, 192
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	148
NotI	GCGGCCGC	1 cut(s)	325
PasI	CCCWGGG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	205
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	1 cut(s)	383
PmaCI	CACGTG	1 cut(s)	730
PmlI	CACGTG	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	730
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	3 cut(s)	169, 251, 332
PvuI	CGATCG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	95, 219, 347
RsaNI	GTAC	3 cut(s)	94, 218, 346
SacI	GAGCTC	1 cut(s)	246
SacII	CCGCGG	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	852, 858
Sau3AI	GATC	3 cut(s)	159, 188, 192
Sau96I	GGNCC	3 cut(s)	169, 251, 332
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	336, 372
SduI	GDGCHC	2 cut(s)	246, 729
SfaNI	GCATC	3 cut(s)	21, 439, 837
Sfr303I	CCGCGG	1 cut(s)	331
SgrBI	CCGCGG	1 cut(s)	331
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	53, 500
SmoI	CTYRAG	2 cut(s)	53, 500
Sse9I	AATT	3 cut(s)	256, 686, 815
SseBI	AGGCCT	1 cut(s)	128
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	3 cut(s)	321, 453, 865
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	334, 370
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	6 cut(s)	29, 191, 208, 291, 306, 390
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	3 cut(s)	256, 686, 815
TauI	GCSGC	9 cut(s)	114, 232, 327, 330, 333, 359, 400, 617, 736
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	852, 858
Tru9I	TTAA	2 cut(s)	852, 858
TscAI	CASTG	1 cut(s)	814
TseI	GCWGC	4 cut(s)	142, 367, 736, 790
TspDTI	ATGAA	2 cut(s)	34, 828
TspRI	CASTG	1 cut(s)	814
VneI	GTGCAC	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	803
XspI	CTAG	3 cut(s)	321, 453, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.