Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341187.1

Orthogroup ID

OG0006322

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 611

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 611 bp

acgccaagcatgctcctaagatgaccgatctcgacggcaacatcgtcgacgttccgaacccgagcggccgcggcgccggttaccggtactttggcgcggcgaagaagctaccgggtgtcagggagcttttcgagaagccgccggagctgaggaagcggcggaccaggtatgacatttacaagaggattgatgccagctattatgggtacagggacgacgaggatggggttttggagaagctggaggttgtggcggaggagaagatgagggcggaggcggtggcggagtggtggaggttggaggagataaggagggaggccaagagggccgtgaagagtggtgaagtggtgacggtggcgaaggccaaggagattctggtggaggaggaggaggaggtggtggaagaagagaggcagagagagagggagttgttcaaagagaagagtgaaaaagagatggagtttgtggctcatgtgccattgccggatgacaaggagattgagaagatggtgcttgagaagaagaagaaggacttgctgagtaggtatgtcagtgaggaattgatgcaggaccagactgaggctaagcagatgcttaatattaagcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Isy1

Protein Analysis

202

Amino Acids

23.77

Weight (kDa)

5.61

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18790
fragaria_vesca	FvH4_4g12620 FvH4_4g12620
malus_domestica	MD12G1216200.v1.1
prunus_persica	Prupe.6G322400_v2.0.a1 Prupe.7G048200_v2.0.a1 Prupe.7G048200_v2.0.a1
pyrus_communis	pycom04g17830 pycom12g20170
rosa_chinensis	RchiOBHm_Chr4g0411521
rosa_laevigata	RLG00000002170 RLG00000008349
rosa_multiflora	Rmu_co8341187.1_g000001 Rmu_sc0024225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238560 Rroxscaffold_5G00356090
rosa_rugosa	Rorug04G0108200 Rorug04G0108300 Rorug04G0108400
rosa_samantha	Rh4AG168700 Rh4BG165200 Rh4CG180000 Rh4DG163000 Rh7AG342900 Rh7CG360500
rosa_wichuraiana	Rw0G020800 Rw4G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	2 cut(s)	71, 97
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	88, 208
AfiI	CCNNNNNNNGG	2 cut(s)	83, 579
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	435
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	5 cut(s)	108, 126, 147, 197, 240
AluI	AGCT	5 cut(s)	108, 126, 147, 197, 240
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	4 cut(s)	66, 317, 326, 362
AsiGI	ACCGGT	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	76, 97
AspS9I	GGNCC	3 cut(s)	161, 326, 570
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	352, 360
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	161, 570
BanI	GGYRCC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	217, 450, 501
BceAI	ACGGC	2 cut(s)	51, 313
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	77
BglI	GCCNNNNNGGC	1 cut(s)	325
BisI	GCNGC	6 cut(s)	66, 69, 72, 98, 139, 157
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	6 cut(s)	67, 70, 73, 99, 140, 158
Bme1390I	CCNGG	2 cut(s)	113, 165
Bme18I	GGWCC	2 cut(s)	161, 570
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	161, 326, 570
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	113, 165
BmsI	GCATC	3 cut(s)	180, 554, 581
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	148
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	535
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	69, 365
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 579
Bse118I	RCCGGY	2 cut(s)	76, 83
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	69, 365
BseGI	GGATG	2 cut(s)	228, 492
BseLI	CCNNNNNNNGG	2 cut(s)	83, 579
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	3 cut(s)	139, 529, 569
BseRI	GAGGAG	6 cut(s)	271, 316, 397, 400, 403, 406
BseX3I	CGGCCG	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	71, 97
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	68, 319, 328, 364
BshNI	GGYRCC	1 cut(s)	73
BshTI	ACCGGT	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	77, 84, 112, 142, 484
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	83, 579
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	68, 319, 328, 364
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	27
Bsp1720I	GCTNAGC	1 cut(s)	584
BspANI	GGCC	4 cut(s)	68, 319, 328, 364
BspCNI	CTCAG	3 cut(s)	140, 530, 570
BspFNI	CGCG	2 cut(s)	71, 97
BspLI	GGNNCC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	478
BsrFI	RCCGGY	2 cut(s)	76, 83
BssAI	RCCGGY	2 cut(s)	76, 83
BssECI	CCNNGG	2 cut(s)	69, 365
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	3 cut(s)	328, 401, 436
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	11, 195
BstDEI	CTNAG	5 cut(s)	17, 148, 538, 578, 584
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	228, 492
BstFNI	CGCG	2 cut(s)	71, 97
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	76, 97
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 71, 144, 153, 325
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	111, 163
BstUI	CGCG	2 cut(s)	71, 97
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	68, 319, 328, 364
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	228, 492
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	2 cut(s)	11, 195
CciNI	GCGGCCGC	1 cut(s)	66
CfoI	GCGC	2 cut(s)	76, 97
Cfr10I	RCCGGY	2 cut(s)	76, 83
Cfr13I	GGNCC	3 cut(s)	161, 326, 570
Cfr42I	CCGCGG	1 cut(s)	72
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	87, 207
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	2 cut(s)	10, 472
CviQI	GTAC	2 cut(s)	87, 207
DdeI	CTNAG	5 cut(s)	17, 148, 538, 578, 584
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	3 cut(s)	328, 401, 436
EarI	CTCTTC	3 cut(s)	328, 401, 436
EciI	GGCGGA	4 cut(s)	174, 268, 286, 298
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	161, 570
Eco52I	CGGCCG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	365
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	13, 475
FaiI	YATR	5 cut(s)	11, 170, 203, 473, 548
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	9, 471
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	6 cut(s)	66, 69, 72, 98, 139, 157
FokI	GGATG	2 cut(s)	235, 499
Fsp4HI	GCNGC	6 cut(s)	66, 69, 72, 98, 139, 157
GlaI	GCGC	2 cut(s)	75, 96
GluI	GCNGC	6 cut(s)	66, 69, 72, 98, 139, 157
GsuI	CTGGAG	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	68, 319, 328, 364
HapII	CCGG	5 cut(s)	77, 84, 112, 142, 484
HhaI	GCGC	2 cut(s)	76, 97
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	13, 475
Hin6I	GCGC	2 cut(s)	74, 95
HinP1I	GCGC	2 cut(s)	74, 95
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	5 cut(s)	77, 84, 112, 142, 484
HphI	GGTGA	2 cut(s)	352, 360
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	31, 132
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	4 cut(s)	37, 49, 52, 220
HpyAV	CCTTC	2 cut(s)	354, 522
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 71, 144, 153, 325
HpyF3I	CTNAG	5 cut(s)	17, 148, 538, 578, 584
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	13, 475
HspAI	GCGC	2 cut(s)	74, 95
KasI	GGCGCC	1 cut(s)	73
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	3 cut(s)	18, 123, 144
LweI	GCATC	3 cut(s)	180, 554, 581
MabI	ACCWGGT	1 cut(s)	163
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	79, 348
MalI	GATC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	1 cut(s)	27
MluCI	AATT	1 cut(s)	559
Mly113I	GGCGCC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	278
MseI	TTAA	2 cut(s)	596, 602
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	5 cut(s)	77, 84, 112, 142, 484
MspR9I	CCNGG	2 cut(s)	113, 165
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	2 cut(s)	71, 97
MwoI	GCNNNNNNNGC	5 cut(s)	10, 71, 144, 153, 325
NarI	GGCGCC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	13, 475
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	348
NotI	GCGGCCGC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	13
PaeI	GCATGC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	372
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	67, 70, 73, 99, 140, 158
PluTI	GGCGCC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	161, 326, 570
RsaI	GTAC	2 cut(s)	88, 208
RsaNI	GTAC	2 cut(s)	87, 207
SacII	CCGCGG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	596, 602
SatI	GCNGC	6 cut(s)	66, 69, 72, 98, 139, 157
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	161, 326, 570
ScrFI	CCNGG	2 cut(s)	113, 165
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	3 cut(s)	180, 554, 581
SfiI	GGCCNNNNNGGCC	1 cut(s)	325
SfoI	GGCGCC	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	161, 570
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
SphI	GCATGC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	559
SspDI	GGCGCC	1 cut(s)	73
SspI	AATATT	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	111, 163
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	32, 47, 131
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	559
TauI	GCSGC	6 cut(s)	68, 71, 74, 100, 141, 159
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	2 cut(s)	596, 602
Tru9I	TTAA	2 cut(s)	596, 602
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	348
TspRI	CASTG	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	161, 570
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.