Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003672

Physical Location & Seq

Genomic Coordinates Reverse (-)

7123182 .. 7130477

Gene Structure 7296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2610 bp

ATGGTGTCCCTCTCTAATCAAACCAGATTCTCTTTCCACCCAAACAATCTTGTCGTTTCCGAGAAACGGCGCCTGGGAATCTCAGGAGTCAATTTTCCCAGGAAGATCAAGTTGAAAATCACTTGCTTCGCCGCCGAGAGACCACGCCAGGAGAAACAGAAAAAGAAGAGTCAGAGCCAGAGCACTAGCGACGCTGAGGCTGGAGTTGACCCTGTTGGGTTTCTCACCAGACTCGGAATTGCTGACAGAATCTTTGCTCAATTTCTCCGGGAAAGGCATAAAGCTTTGAAAGACCTTAAAGATGAGATTTTCAAACGCCATTTCGATTTCAGAGATTTTGCTTCAGGATTTGAGTTATTGGGGATGCATCGACATATGGAACACCGGGTTGACTTTATGGACTGGGGTCCAGGTTCTCGTTATGGGGCTATAATCGGAGATTTCAATGGATGGTCGCCTACAGAAAATGCAGCTAGAGAGGGCCTATTTGGCCATGATGATTATGGGTATTGGTTCATTATTCTTGAAGATAAGTTAAGAGAGGGTGAAGAACCAGATGAACTATACTTTCAGCAGTATAACTATGTCGATGACTATGATAAGGGTGATAGTGGTGTATCAGCTGAAGAAATCTTCCAGAAAGCTAATGATGAGTATTGGGAACCTGGTGAGGATCGGTTTATTAAAAACCGCTTTGAAGTTCCTGCCAAACTATACGAGCAGATGTTTGGCCCGAACAGTCCACAAACGTTAGAAGAGCTTGGAGATATACCAGATGCAGAAACGAGATATAAACAGTGGAAAGAGGAGCATAAAGATGACCCGCCAAGTAATCTACCTCCATGCGACATCATTGATAAAGGTCAAGGAAAGCCATATGATATTTTTAATGTCGTGACATCTCCAGAATGGACAAAGAAATTTTATGAGAAAGAACCTCCGATTCCATATTGGTTAGAGACACGTAAAGGAAGAAAGGCATGGTTGCAAAAATATATTCCAGCTGTTCCACATGGAAGCAAGTATAGATTGTATTTCAATACTCCTGATGGACCGCTTGAACGAGTGCCTGCTTGGGCTACATATGTGCAACCAGAGGATGAAGGAAAGCAAGCTTACGCAATTCATTGGGAACCTTCTCCTGAAGCTGCATACAAGTGGAAATATTCCAAGCCAAAAGTTCCAGAGTCCTTGCGCATATACGAATGTCATGTTGGAATCAGTGGGTCCGAGCCAAAAGTTTCAACTTTCGAAGAATTTACTAAGAAGGTTACGAACTTCTTTGCTGCCAGTAGCCGATATGGCACGCCAGATGATTTCAAACGGTTGGTTGATGAGGCACATGGCCTAGGACTTCTTGTCTTTTTGGACATCGTGCATTCTTATGCAGCAGCTGATCAGATGGTTGGGCTTTCTCTCTTCGATGGTTCAAATGATTGCTATTTTCATTATGGTAAAAGGGGGCATCACAAACACTGGGGCACCCGGATGTTCAAATACGGTGATTTGGATGTTCTTCATTTTCTAATATCAAATTTGAACTGGTGGATTACAGAGTATCAAGTTGATGGTTACCAATTTCACTCGCTTGCCTCGATGATTTACACGCACAATGGGTTTGCTTCATTTAACAACGATTTGGATGACTATTGCAATCAGTATGTTGACCGAGATGCTCTGATGTACCTCATTTTGGCCAATGAAATCCTGCACGTTCAACATCCAAATATAATAACAATTGCTGAGGATGCAACATATTACCCTGGGTTGTGTGAGCCAGTTTCTCAAGGTGGACTTGGATTTGATTATTATGTGAATCTTTCTGCGTCAGAAATGTGGGTTTCTCTCCTCGACAATGTACCGGATAATGAATGGAGCATGAGCAAGATTGTCAGTACATTGGTGGCTAACAAAGAGTATGCAGACAAGATGCTCAGCTATGCCGAAAATCACAACCAATCCATATCAGGAGGGCGTTCATTTGCTGAAATCTTATTCGGTGGAGTCGATAATGGTTCTCCTGGAGGAAAAGAATTGCTAGACAGGGGAATTTCACTACATAAGATGATTAGACTGATTACTTTTACAAGTGGTGGCCGTGCATACCTCAATTTCATGGGAAATGAATTTGGACATCCTGAGAGGGTTGAGTTTCCAACGCAGAGCAATAACTTCTCGTTTTCACTTGCTAACCGCCGCTGGGACCTGCTGGAAAGTGGAGTGCATCATCACTTGTTTTCCTTTGACAAGGAGCTAATGGACTTGGATAAAAGCAAGGGTATCCTTTCAAGAGGTCTGCCCAGCATCCACCATGTGAATGATGCAAATATGGTGATTTCTTTCTCAAGGGGTCCTTTCCTATTTATCTTTAACTTCCACCCATCAAATTCATATGAAAAGTATGATGTCGGTGTAGAGGAAGCTGGTGAATATACCATGATACTGAACTCCGATGAAGTAAAGTATGGGGGTCAAGGGATTGTAACAGAAGACCACTATCTTCAACGGTCAATTAGCAAGAGAATTGATGGTCAAAGAAATTGCTTAGAGGTGTTTTTGCCTAGCCGGACTGCCCAAGTTTACAAGTTGACCCGGATCCTCCGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase Alpha-amylase_C CBM_48

Protein Analysis

869

Amino Acids

100.1

Weight (kDa)

5.69

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-amylase_C	PF02806	771 - 863	4e-20	Alpha amylase, C-terminal all-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20440 AT3G20440 AT3G20440
fragaria_vesca	FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220
malus_domestica	MD11G1212700.v1.1
prunus_persica	Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1
pyrus_communis	pycom11g18770
rosa_chinensis	RchiOBHm_Chr5g0040901 RchiOBHm_Chr5g0040911
rosa_laevigata	RLG00000034012
rosa_multiflora	Rmu_sc0002848.1_g000016 Rmu_ssc0000416.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039790
rosa_rugosa	Rorug05G0188500 Rorug05G0188600 Rorug05G0188600
rosa_samantha	Rh5AG274100 Rh5BG279100 Rh5CG311200 Rh5DG287300
rosa_wichuraiana	Rw5G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1196
Acc36I	ACCTGC	1 cut(s)	2214
AccB1I	GGYRCC	2 cut(s)	69, 1481
AciI	CCGC	6 cut(s)	132, 691, 824, 1055, 2194, 2197
AclI	AACGTT	1 cut(s)	749
AclWI	GGATC	3 cut(s)	681, 2590, 2603
AcoI	YGGCCR	3 cut(s)	490, 1695, 2095
AcsI	RAATTY	6 cut(s)	920, 1256, 1534, 2049, 2126, 2386
AcuI	CTGAAG	3 cut(s)	327, 645, 1164
AcyI	GRCGYC	1 cut(s)	70
AdeI	CACNNNGTG	1 cut(s)	2314
AfaI	GTAC	3 cut(s)	1685, 1860, 1897
AfiI	CCNNNNNNNGG	3 cut(s)	66, 1693, 2200
AflIII	ACRYGT	1 cut(s)	962
AhdI	GACNNNNNGTC	1 cut(s)	1358
AjnI	CCWGG	7 cut(s)	72, 98, 147, 409, 664, 1762, 2020
AjuI	GAANNNNNNNTTGG	2 cut(s)	1197, 1229
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	133, 953
AlwI	GGATC	3 cut(s)	681, 2590, 2603
AlwNI	CAGNNNCTG	1 cut(s)	1394
AoxI	GGCC	6 cut(s)	481, 490, 730, 1345, 1695, 2095
ApeKI	GCWGC	5 cut(s)	470, 1148, 1286, 1388, 1391
ApoI	RAATTY	6 cut(s)	920, 1256, 1534, 2049, 2126, 2386
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspA2I	CCTAGG	1 cut(s)	1348
AspLEI	GCGC	2 cut(s)	72, 1197
AspS9I	GGNCC	7 cut(s)	407, 481, 731, 1052, 1227, 2203, 2351
AsuC2I	CCSGG	4 cut(s)	269, 386, 1486, 2593
AsuHPI	GGTGA	7 cut(s)	217, 557, 617, 680, 1514, 2344, 2438
AsuII	TTCGAA	1 cut(s)	1251
AvaII	GGWCC	5 cut(s)	407, 1052, 1227, 2203, 2351
AvrII	CCTAGG	1 cut(s)	1348
BaeGI	GKGCMC	1 cut(s)	1484
BalI	TGGCCA	2 cut(s)	492, 1697
BamHI	GGATCC	1 cut(s)	2595
BanI	GGYRCC	2 cut(s)	69, 1481
BbsI	GAAGAC	1 cut(s)	2496
Bbv12I	GWGCWC	1 cut(s)	185
BbvCI	CCTCAGC	2 cut(s)	195, 1743
BbvI	GCAGC	5 cut(s)	482, 1135, 1273, 1400, 1403
BccI	CCATC	7 cut(s)	444, 1043, 1396, 1418, 1562, 2389, 2522
BceAI	ACGGC	2 cut(s)	83, 2082
BciT130I	CCWGG	7 cut(s)	74, 100, 149, 411, 666, 1764, 2022
BciVI	GTATCC	1 cut(s)	2291
BclI	TGATCA	1 cut(s)	1396
BcnI	CCSGG	4 cut(s)	269, 386, 1486, 2593
BcoDI	GTCTC	2 cut(s)	133, 953
BfaI	CTAG	5 cut(s)	186, 474, 1349, 2039, 2562
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	2214
BfuI	GTATCC	1 cut(s)	2291
BglI	GCCNNNNNGGC	2 cut(s)	489, 1302
BisI	GCNGC	7 cut(s)	132, 471, 1149, 1287, 1389, 1392, 2197
BlnI	CCTAGG	1 cut(s)	1348
BlpI	GCTNAGC	1 cut(s)	1934
BlsI	GCNGC	7 cut(s)	133, 472, 1150, 1288, 1390, 1393, 2198
Bme18I	GGWCC	5 cut(s)	407, 1052, 1227, 2203, 2351
BmeRI	GACNNNNNGTC	1 cut(s)	1358
BmgT120I	GGNCC	7 cut(s)	407, 481, 731, 1052, 1227, 2203, 2351
BmiI	GGNNCC	9 cut(s)	71, 408, 663, 1134, 1228, 1483, 2204, 2352, 2597
BmrI	ACTGGG	2 cut(s)	412, 1486
BmuI	ACTGGG	2 cut(s)	412, 1486
BoxI	GACNNNNGTC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	2496
BpmI	CTGGAG	3 cut(s)	222, 888, 2043
Bpu10I	CCTNAGC	2 cut(s)	195, 1743
Bpu1102I	GCTNAGC	1 cut(s)	1934
Bpu14I	TTCGAA	1 cut(s)	1251
BpuEI	CTTGAG	2 cut(s)	1770, 2329
BpuMI	CCSGG	4 cut(s)	269, 386, 1486, 2593
BsaAI	YACGTR	1 cut(s)	965
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	5 cut(s)	73, 98, 1348, 1762, 1763
BsaWI	WCCGGW	1 cut(s)	1861
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 1693, 2200
Bse1I	ACTGG	5 cut(s)	407, 1290, 1481, 1547, 1778
BseBI	CCWGG	7 cut(s)	74, 100, 149, 411, 666, 1764, 2022
BseDI	CCNNGG	5 cut(s)	73, 98, 1348, 1762, 1763
BseLI	CCNNNNNNNGG	3 cut(s)	66, 1693, 2200
BseMII	CTCAG	5 cut(s)	96, 186, 1734, 1948, 2130
BseNI	ACTGG	5 cut(s)	407, 1290, 1481, 1547, 1778
BseRI	GAGGAG	2 cut(s)	821, 1838
BseSI	GKGCMC	1 cut(s)	1484
BseXI	GCAGC	5 cut(s)	482, 1135, 1273, 1400, 1403
BseYI	CCCAGC	2 cut(s)	2199, 2300
BsgI	GTGCAG	1 cut(s)	1694
BshFI	GGCC	6 cut(s)	483, 492, 732, 1347, 1697, 2097
BshNI	GGYRCC	2 cut(s)	69, 1481
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	6 cut(s)	268, 385, 1486, 1862, 2566, 2593
BslFI	GGGAC	1 cut(s)	2216
BslI	CCNNNNNNNGG	3 cut(s)	66, 1693, 2200
BsmAI	GTCTC	2 cut(s)	133, 953
BsmFI	GGGAC	1 cut(s)	2216
BsmI	GAATGC	1 cut(s)	1378
BsnI	GGCC	6 cut(s)	483, 492, 732, 1347, 1697, 2097
Bso31I	GGTCTC	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	1251
Bsp1286I	GDGCHC	2 cut(s)	185, 1484
Bsp143I	GATC	4 cut(s)	105, 673, 1396, 2595
Bsp1720I	GCTNAGC	1 cut(s)	1934
BspACI	CCGC	6 cut(s)	132, 691, 824, 1055, 2194, 2197
BspANI	GGCC	6 cut(s)	483, 492, 732, 1347, 1697, 2097
BspCNI	CTCAG	5 cut(s)	95, 187, 1735, 1947, 2131
BspLI	GGNNCC	9 cut(s)	71, 408, 663, 1134, 1228, 1483, 2204, 2352, 2597
BspMI	ACCTGC	1 cut(s)	2214
BspPI	GGATC	3 cut(s)	681, 2590, 2603
BspQI	GCTCTTC	1 cut(s)	750
BspT104I	TTCGAA	1 cut(s)	1251
BspT107I	GGYRCC	2 cut(s)	69, 1481
BspTNI	GGTCTC	1 cut(s)	133
BsrI	ACTGG	5 cut(s)	407, 1290, 1481, 1547, 1778
BssECI	CCNNGG	5 cut(s)	73, 98, 1348, 1762, 1763
BssMI	GATC	4 cut(s)	105, 673, 1396, 2595
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	1348
Bst2UI	CCWGG	7 cut(s)	74, 100, 149, 411, 666, 1764, 2022
Bst4CI	ACNGT	5 cut(s)	740, 798, 1326, 1502, 2508
Bst6I	CTCTTC	3 cut(s)	161, 750, 1424
BstACI	GRCGYC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	965
BstBI	TTCGAA	1 cut(s)	1251
BstC8I	GCNNGC	4 cut(s)	1071, 1113, 1307, 1590
BstDEI	CTNAG	7 cut(s)	82, 195, 1263, 1743, 1934, 2139, 2545
BstEII	GGTNACC	1 cut(s)	1571
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	72, 1197
BstKTI	GATC	4 cut(s)	108, 676, 1399, 2598
BstMAI	GTCTC	2 cut(s)	133, 953
BstMBI	GATC	4 cut(s)	105, 673, 1396, 2595
BstMWI	GCNNNNNNNGC	3 cut(s)	489, 1302, 1748
BstNI	CCWGG	7 cut(s)	74, 100, 149, 411, 666, 1764, 2022
BstPAI	GACNNNNGTC	1 cut(s)	405
BstPI	GGTNACC	1 cut(s)	1571
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	1484
BstV1I	GCAGC	5 cut(s)	482, 1135, 1273, 1400, 1403
BstV2I	GAAGAC	1 cut(s)	2496
BstX2I	RGATCY	1 cut(s)	2595
BstYI	RGATCY	1 cut(s)	2595
BsuI	GTATCC	1 cut(s)	2291
BsuRI	GGCC	6 cut(s)	483, 492, 732, 1347, 1697, 2097
BtsIMutI	CAGTG	3 cut(s)	803, 1228, 1474
BveI	ACCTGC	1 cut(s)	2214
Cac8I	GCNNGC	4 cut(s)	1071, 1113, 1307, 1590
CaiI	CAGNNNCTG	1 cut(s)	1394
CfoI	GCGC	2 cut(s)	72, 1197
Cfr13I	GGNCC	7 cut(s)	407, 481, 731, 1052, 1227, 2203, 2351
CseI	GACGC	2 cut(s)	200, 1815
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	3 cut(s)	1684, 1859, 1896
CviQI	GTAC	3 cut(s)	1684, 1859, 1896
DdeI	CTNAG	7 cut(s)	82, 195, 1263, 1743, 1934, 2139, 2545
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	4 cut(s)	107, 675, 1398, 2597
DpnII	GATC	4 cut(s)	105, 673, 1396, 2595
DraIII	CACNNNGTG	1 cut(s)	2314
DriI	GACNNNNNGTC	1 cut(s)	1358
EaeI	YGGCCR	3 cut(s)	490, 1695, 2095
Eam1104I	CTCTTC	3 cut(s)	161, 750, 1424
Eam1105I	GACNNNNNGTC	1 cut(s)	1358
EarI	CTCTTC	3 cut(s)	161, 750, 1424
Eco130I	CCWWGG	1 cut(s)	1348
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	5 cut(s)	407, 1052, 1227, 2203, 2351
Eco57I	CTGAAG	3 cut(s)	327, 645, 1164
Eco91I	GGTNACC	1 cut(s)	1571
EcoO109I	RGGNCCY	3 cut(s)	481, 2203, 2351
EcoO65I	GGTNACC	1 cut(s)	1571
EcoRII	CCWGG	7 cut(s)	72, 98, 147, 409, 664, 1762, 2020
EcoT14I	CCWWGG	1 cut(s)	1348
EcoT22I	ATGCAT	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	1348
FalI	AAGNNNNNCTT	4 cut(s)	1779, 1811, 2338, 2370
FaqI	GGGAC	1 cut(s)	2216
FauI	CCCGC	1 cut(s)	831
FauNDI	CATATG	4 cut(s)	375, 877, 1084, 2392
FbaI	TGATCA	1 cut(s)	1396
Fnu4HI	GCNGC	7 cut(s)	132, 471, 1149, 1287, 1389, 1392, 2197
Fsp4HI	GCNGC	7 cut(s)	132, 471, 1149, 1287, 1389, 1392, 2197
FspBI	CTAG	5 cut(s)	186, 474, 1349, 2039, 2562
FspI	TGCGCA	1 cut(s)	1196
GlaI	GCGC	2 cut(s)	71, 1196
GluI	GCNGC	7 cut(s)	132, 471, 1149, 1287, 1389, 1392, 2197
GsaI	CCCAGC	2 cut(s)	2203, 2304
GsuI	CTGGAG	3 cut(s)	222, 888, 2043
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	6 cut(s)	483, 492, 732, 1347, 1697, 2097
HapII	CCGG	6 cut(s)	268, 385, 1486, 1862, 2566, 2593
HgaI	GACGC	2 cut(s)	200, 1815
HhaI	GCGC	2 cut(s)	72, 1197
Hin1I	GRCGYC	1 cut(s)	70
Hin6I	GCGC	2 cut(s)	70, 1195
HinP1I	GCGC	2 cut(s)	70, 1195
HincII	GTYRAC	4 cut(s)	208, 391, 1666, 2589
HindII	GTYRAC	4 cut(s)	208, 391, 1666, 2589
HindIII	AAGCTT	2 cut(s)	282, 1113
HpaII	CCGG	6 cut(s)	268, 385, 1486, 1862, 2566, 2593
HphI	GGTGA	7 cut(s)	217, 557, 617, 680, 1514, 2344, 2438
Hpy166II	GTNNAC	7 cut(s)	208, 391, 743, 1666, 1793, 2581, 2589
Hpy8I	GTNNAC	7 cut(s)	208, 391, 743, 1666, 1793, 2581, 2589
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	1097, 1146, 1261
HpyCH4III	ACNGT	5 cut(s)	740, 798, 1326, 1502, 2508
HpyCH4IV	ACGT	3 cut(s)	749, 964, 1713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	489, 1302, 1748
HpyF3I	CTNAG	7 cut(s)	82, 195, 1263, 1743, 1934, 2139, 2545
HpySE526I	ACGT	3 cut(s)	749, 964, 1713
Hsp92I	GRCGYC	1 cut(s)	70
HspAI	GCGC	2 cut(s)	70, 1195
KasI	GGCGCC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	1396
Kzo9I	GATC	4 cut(s)	105, 673, 1396, 2595
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	3 cut(s)	808, 1875, 2251
Lsp1109I	GCAGC	5 cut(s)	482, 1135, 1273, 1400, 1403
MabI	ACCWGGT	1 cut(s)	664
MaeI	CTAG	5 cut(s)	186, 474, 1349, 2039, 2562
MaeII	ACGT	3 cut(s)	749, 964, 1713
MaeIII	GTNAC	4 cut(s)	895, 1270, 1571, 2482
MalI	GATC	4 cut(s)	107, 675, 1398, 2597
MboI	GATC	4 cut(s)	105, 673, 1396, 2595
MfeI	CAATTG	1 cut(s)	1737
MflI	RGATCY	1 cut(s)	2595
MhlI	GDGCHC	2 cut(s)	185, 1484
MlsI	TGGCCA	2 cut(s)	492, 1697
MluNI	TGGCCA	2 cut(s)	492, 1697
Mly113I	GGCGCC	1 cut(s)	70
MlyI	GAGTC	5 cut(s)	96, 178, 225, 1196, 2013
MmeI	TCCRAC	2 cut(s)	1195, 2180
Mox20I	TGGCCA	2 cut(s)	492, 1697
Mph1103I	ATGCAT	1 cut(s)	369
MscI	TGGCCA	2 cut(s)	492, 1697
MseI	TTAA	6 cut(s)	297, 536, 684, 888, 1629, 2370
MslI	CAYNNNNRTG	5 cut(s)	816, 1156, 1383, 1487, 2316
Msp20I	TGGCCA	2 cut(s)	492, 1697
MspA1I	CMGCKG	4 cut(s)	623, 1004, 1394, 2199
MspI	CCGG	6 cut(s)	268, 385, 1486, 1862, 2566, 2593
MunI	CAATTG	1 cut(s)	1737
Mva1269I	GAATGC	1 cut(s)	1378
MvaI	CCWGG	7 cut(s)	74, 100, 149, 411, 666, 1764, 2022
MwoI	GCNNNNNNNGC	3 cut(s)	489, 1302, 1748
NarI	GGCGCC	1 cut(s)	70
NciI	CCSGG	4 cut(s)	269, 386, 1486, 2593
NdeI	CATATG	4 cut(s)	375, 877, 1084, 2392
NdeII	GATC	4 cut(s)	105, 673, 1396, 2595
NlaIV	GGNNCC	9 cut(s)	71, 408, 663, 1134, 1228, 1483, 2204, 2352, 2597
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	895
NsbI	TGCGCA	1 cut(s)	1196
NsiI	ATGCAT	1 cut(s)	369
NspV	TTCGAA	1 cut(s)	1251
PasI	CCCWGGG	1 cut(s)	1763
PciSI	GCTCTTC	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	2 cut(s)	1592, 2004
PctI	GAATGC	1 cut(s)	1378
PfeI	GAWTC	6 cut(s)	27, 78, 249, 943, 1218, 1816
PfoI	TCCNGGA	2 cut(s)	267, 2020
PkrI	GCNGC	7 cut(s)	133, 472, 1150, 1288, 1390, 1393, 2198
PleI	GAGTC	5 cut(s)	95, 177, 225, 1195, 2012
PluTI	GGCGCC	1 cut(s)	73
PpsI	GAGTC	5 cut(s)	95, 177, 225, 1195, 2012
Ppu21I	YACGTR	1 cut(s)	965
PpuMI	RGGWCCY	2 cut(s)	2203, 2351
PshAI	GACNNNNGTC	1 cut(s)	405
Psp1406I	AACGTT	1 cut(s)	749
Psp5II	RGGWCCY	2 cut(s)	2203, 2351
Psp6I	CCWGG	7 cut(s)	72, 98, 147, 409, 664, 1762, 2020
PspEI	GGTNACC	1 cut(s)	1571
PspFI	CCCAGC	2 cut(s)	2199, 2300
PspGI	CCWGG	7 cut(s)	72, 98, 147, 409, 664, 1762, 2020
PspN4I	GGNNCC	9 cut(s)	71, 408, 663, 1134, 1228, 1483, 2204, 2352, 2597
PspPI	GGNCC	7 cut(s)	407, 481, 731, 1052, 1227, 2203, 2351
PspPPI	RGGWCCY	2 cut(s)	2203, 2351
PstNI	CAGNNNCTG	1 cut(s)	1394
PsuI	RGATCY	1 cut(s)	2595
PvuII	CAGCTG	3 cut(s)	623, 1004, 1394
RsaI	GTAC	3 cut(s)	1685, 1860, 1897
RsaNI	GTAC	3 cut(s)	1684, 1859, 1896
RseI	CAYNNNNRTG	5 cut(s)	816, 1156, 1383, 1487, 2316
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	6 cut(s)	297, 536, 684, 888, 1629, 2370
SatI	GCNGC	7 cut(s)	132, 471, 1149, 1287, 1389, 1392, 2197
Sau3AI	GATC	4 cut(s)	105, 673, 1396, 2595
Sau96I	GGNCC	7 cut(s)	407, 481, 731, 1052, 1227, 2203, 2351
SchI	GAGTC	5 cut(s)	96, 178, 225, 1196, 2013
SduI	GDGCHC	2 cut(s)	185, 1484
SexAI	ACCWGGT	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	459
SfiI	GGCCNNNNNGGCC	1 cut(s)	489
SfoI	GGCGCC	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	1251
SinI	GGWCC	5 cut(s)	407, 1052, 1227, 2203, 2351
SmiMI	CAYNNNNRTG	5 cut(s)	816, 1156, 1383, 1487, 2316
SmlI	CTYRAG	2 cut(s)	1785, 2344
SmoI	CTYRAG	2 cut(s)	1785, 2344
SsiI	CCGC	6 cut(s)	132, 691, 824, 1055, 2194, 2197
SspDI	GGCGCC	1 cut(s)	69
SspI	AATATT	1 cut(s)	1166
SspMI	CTAG	5 cut(s)	186, 474, 1349, 2039, 2562
StyI	CCWWGG	1 cut(s)	1348
TaaI	ACNGT	5 cut(s)	740, 798, 1326, 1502, 2508
TaiI	ACGT	3 cut(s)	752, 967, 1716
TaqI	TCGA	8 cut(s)	324, 370, 588, 1251, 1422, 1595, 1851, 2007
TaqII	GACCGA	1 cut(s)	1683
TatI	WGTACW	1 cut(s)	1895
TauI	GCSGC	2 cut(s)	134, 2199
TfiI	GAWTC	6 cut(s)	27, 78, 249, 943, 1218, 1816
Tru1I	TTAA	6 cut(s)	297, 536, 684, 888, 1629, 2370
Tru9I	TTAA	6 cut(s)	297, 536, 684, 888, 1629, 2370
TscAI	CASTG	3 cut(s)	803, 1228, 1481
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	5 cut(s)	470, 1148, 1286, 1388, 1391
Tsp45I	GTSAC	1 cut(s)	895
TspRI	CASTG	3 cut(s)	803, 1228, 1481
VpaK11BI	GGWCC	5 cut(s)	407, 1052, 1227, 2203, 2351
XapI	RAATTY	6 cut(s)	920, 1256, 1534, 2049, 2126, 2386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XmaJI	CCTAGG	1 cut(s)	1348
XspI	CTAG	5 cut(s)	186, 474, 1349, 2039, 2562
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.