Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003672

Physical Location & Seq

Genomic Coordinates Forward (+)

35528419 .. 35531289

Gene Structure 2871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCTTCACTTTCACTTTCAACCAAGTTCCCTCTGTACCCCAACCTCACATTTCTCCAATTCCAGTACCCAAACAGACCTCAAAGAATCATCTTTCCTATCAAGAAGACAACCCACATAGGCTGCTCCGCCACAGGTCAACCCCACCAACAACAAAGACCACCCAAGAACAAGAAGAAAACCCTCACCGACGGCGACAAAGGCGTCGACCCAGTTGGCTTCCTCTCCAAATTCGACATCTCCCATAAGCAATTTGCTCAGTTCCTCCGTGAAAGACACAAAGCCCTCAAGGACCTGACAGATGAAATATTAACTCGCCACATCAACCTCAGGGATATGTCTTCTGGATATGAGATATTGGGTTTGCATCGACACCCAGAACATAGAGAGGATTATATGGAGTGGGCTCCAGGTGCTCGCTACTGCGCACTGGTTGGTGATTTCAATGGGTGGTCTCCCACAGAGAACTGTGCAAAAGAGGGTCATTTTGGACATGATGACTATGGATACTGGTTCATCATTCTTGAAGATAAGTTGAGGAATGGAGAGAAACCAGATGAGCTGTACTTTCAACAGTATAACTATGTAGATGATTACGATAAAGGTGACAGTGGTGTTACCATTGAAGAAGTCTTTAAGAAAGCAAATGATGAGTATTGGGAACCTGGAGAAGACCGGTTTCTAAAAAACCGCTTAGAAGTACCAGCAAAGTTGTATGAGCAGATTTTTGGGCCTAATGGACCTCAAACGTTAGAGGAACTTGAAGAAATACCAGATGCAGAAATAAGATATAAAGCGTGGAAAGAACAGCATAAAGATGACCTGCCTAGTAACTTACCTTCTTATGATGTGATTGACAATGGAAAAGAGTATGACATTTACAATGTTGTACTTGATCCAGTATCACAAGAGAAATTTAAAGCAAAGAAGCCTCCCTTGCCATATTGGTTCGAGACACGTAAAGGAAGGAAGGCATGGTTGAAAAAGTATAGGCCGTGCATTCCTCATGGGAGCAAGTACAGGGTCTATTTTAATACTCCTAGTGGGCCACTGGAACGAGTACCTGCTTGGGCAACTTATGTGGAACCAGACGCAGATGGAGGACAAGCTTTTGCAATCCACTGGGAACCACCCCCAGAACTTGCATACAAATGGAAGAATGCACGCCCTAAAGTGCCAAAGTCCCTGCGCATTTATGAATGTCATGTTGGCATAAGTGGATCAGAGCCTAAAGTATCTTCTTTCAGTGATTTCACAGAGAAGGCAACTCCTATTCCTGGATTGTGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase Alpha-amylase_C CBM_48

Protein Analysis

430

Amino Acids

49.9

Weight (kDa)

6.55

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_48	PF02922	120 - 183	7.1e-06	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20440 AT3G20440 AT3G20440
fragaria_vesca	FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220 FvH4_3g23220
malus_domestica	MD11G1212700.v1.1
prunus_persica	Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1 Prupe.4G219000_v2.0.a1
pyrus_communis	pycom11g18770
rosa_chinensis	RchiOBHm_Chr5g0040901 RchiOBHm_Chr5g0040911
rosa_laevigata	RLG00000034012
rosa_multiflora	Rmu_sc0002848.1_g000016 Rmu_ssc0000416.1_g000003
rosa_roxburghii	Rroxscaffold_1G00039790
rosa_rugosa	Rorug05G0188500 Rorug05G0188600 Rorug05G0188600
rosa_samantha	Rh5AG274100 Rh5BG279100 Rh5CG311200 Rh5DG287300
rosa_wichuraiana	Rw5G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc16I	TGCGCA	2 cut(s)	427, 1190
Acc36I	ACCTGC	2 cut(s)	831, 1072
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	129, 691
AclI	AACGTT	1 cut(s)	749
AclWI	GGATC	2 cut(s)	890, 1228
AcsI	RAATTY	2 cut(s)	230, 914
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	7 cut(s)	38, 68, 566, 702, 891, 1019, 1062
AfiI	CCNNNNNNNGG	1 cut(s)	1277
AflIII	ACRYGT	1 cut(s)	956
AgeI	ACCGGT	1 cut(s)	675
AgsI	TTSAA	7 cut(s)	21, 445, 527, 572, 626, 764, 982
AjnI	CCWGG	3 cut(s)	409, 664, 1276
AjuI	GAANNNNNNNTTGG	2 cut(s)	1191, 1223
AluBI	AGCT	2 cut(s)	562, 1109
AluI	AGCT	2 cut(s)	562, 1109
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	459, 947
AlwI	GGATC	2 cut(s)	890, 1228
AoxI	GGCC	3 cut(s)	731, 992, 1046
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	2 cut(s)	230, 914
AsiGI	ACCGGT	1 cut(s)	675
AspLEI	GCGC	2 cut(s)	428, 1191
AspS9I	GGNCC	4 cut(s)	292, 731, 740, 1046
AsuHPI	GGTGA	3 cut(s)	178, 449, 617
AvaII	GGWCC	2 cut(s)	292, 740
AxyI	CCTNAGG	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	409
BarI	GAAGNNNNNNTAC	2 cut(s)	823, 855
BbsI	GAAGAC	3 cut(s)	113, 333, 678
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	1091
BceAI	ACGGC	2 cut(s)	208, 979
BciT130I	CCWGG	3 cut(s)	411, 666, 1278
BciVI	GTATCC	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	459, 947
BfaI	CTAG	3 cut(s)	828, 1041, 1291
BfuAI	ACCTGC	2 cut(s)	831, 1072
BfuI	GTATCC	1 cut(s)	500
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	3 cut(s)	411, 666, 1278
Bme18I	GGWCC	2 cut(s)	292, 740
BmgT120I	GGNCC	4 cut(s)	292, 731, 740, 1046
BmiI	GGNNCC	4 cut(s)	408, 663, 1086, 1128
BmrFI	CCNGG	3 cut(s)	411, 666, 1278
BmrI	ACTGGG	2 cut(s)	206, 1132
BmsI	GCATC	2 cut(s)	376, 766
BmuI	ACTGGG	2 cut(s)	206, 1132
BpiI	GAAGAC	3 cut(s)	113, 333, 678
BpmI	CTGGAG	2 cut(s)	393, 687
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	959
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	1 cut(s)	1277
Bse118I	RCCGGY	1 cut(s)	675
Bse1I	ACTGG	7 cut(s)	64, 212, 435, 515, 899, 1056, 1127
Bse21I	CCTNAGG	1 cut(s)	329
BseBI	CCWGG	3 cut(s)	411, 666, 1278
BseLI	CCNNNNNNNGG	1 cut(s)	1277
BseMII	CTCAG	2 cut(s)	272, 343
BseNI	ACTGG	7 cut(s)	64, 212, 435, 515, 899, 1056, 1127
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	3 cut(s)	733, 994, 1048
BshTI	ACCGGT	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	676
BslFI	GGGAC	1 cut(s)	1168
BslI	CCNNNNNNNGG	1 cut(s)	1277
BsmAI	GTCTC	2 cut(s)	459, 947
BsmFI	GGGAC	1 cut(s)	1168
BsmI	GAATGC	2 cut(s)	999, 1165
BsnI	GGCC	3 cut(s)	733, 994, 1048
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	409, 418
Bsp143I	GATC	2 cut(s)	895, 1220
BspACI	CCGC	2 cut(s)	129, 691
BspANI	GGCC	3 cut(s)	733, 994, 1048
BspCNI	CTCAG	2 cut(s)	271, 342
BspLI	GGNNCC	4 cut(s)	408, 663, 1086, 1128
BspMI	ACCTGC	2 cut(s)	831, 1072
BspPI	GGATC	2 cut(s)	890, 1228
BspTNI	GGTCTC	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	675
BsrI	ACTGG	7 cut(s)	64, 212, 435, 515, 899, 1056, 1127
BssAI	RCCGGY	1 cut(s)	675
BssMI	GATC	2 cut(s)	895, 1220
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	411, 666, 1278
Bst4CI	ACNGT	3 cut(s)	470, 576, 611
BstACI	GRCGYC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	959
BstC8I	GCNNGC	2 cut(s)	418, 1165
BstDEI	CTNAG	3 cut(s)	258, 329, 694
BstHHI	GCGC	2 cut(s)	428, 1191
BstKTI	GATC	2 cut(s)	898, 1223
BstMAI	GTCTC	2 cut(s)	459, 947
BstMBI	GATC	2 cut(s)	895, 1220
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 413, 937
BstNI	CCWGG	3 cut(s)	411, 666, 1278
BstSCI	CCNGG	3 cut(s)	409, 664, 1276
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	3 cut(s)	113, 333, 678
Bsu36I	CCTNAGG	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	3 cut(s)	733, 994, 1048
BtsIMutI	CAGTG	5 cut(s)	428, 616, 1049, 1120, 1252
BveI	ACCTGC	2 cut(s)	831, 1072
Cac8I	GCNNGC	2 cut(s)	418, 1165
CfoI	GCGC	2 cut(s)	428, 1191
Cfr10I	RCCGGY	1 cut(s)	675
Cfr13I	GGNCC	4 cut(s)	292, 731, 740, 1046
CseI	GACGC	2 cut(s)	193, 1100
Csp6I	GTAC	7 cut(s)	37, 67, 565, 701, 890, 1018, 1061
CspAI	ACCGGT	1 cut(s)	675
CspCI	CAANNNNNGTGG	2 cut(s)	1062, 1097
CviAII	CATG	4 cut(s)	494, 975, 1007, 1205
CviQI	GTAC	7 cut(s)	37, 67, 565, 701, 890, 1018, 1061
DdeI	CTNAG	3 cut(s)	258, 329, 694
DpnI	GATC	2 cut(s)	897, 1222
DpnII	GATC	2 cut(s)	895, 1220
DraI	TTTAAA	1 cut(s)	919
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	292, 740
Eco81I	CCTNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	3 cut(s)	409, 664, 1276
EcoT38I	GRGCYC	1 cut(s)	409
FaeI	CATG	4 cut(s)	497, 978, 1010, 1208
FalI	AAGNNNNNCTT	2 cut(s)	920, 952
FaqI	GGGAC	1 cut(s)	1168
FatI	CATG	4 cut(s)	493, 974, 1006, 1204
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	3 cut(s)	828, 1041, 1291
FspI	TGCGCA	2 cut(s)	427, 1190
GlaI	GCGC	2 cut(s)	427, 1190
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	393, 687
HaeIII	GGCC	3 cut(s)	733, 994, 1048
HapII	CCGG	1 cut(s)	676
HgaI	GACGC	2 cut(s)	193, 1100
HhaI	GCGC	2 cut(s)	428, 1191
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	497, 978, 1010, 1208
Hin6I	GCGC	2 cut(s)	426, 1189
HinP1I	GCGC	2 cut(s)	426, 1189
HincII	GTYRAC	2 cut(s)	140, 208
HindII	GTYRAC	2 cut(s)	140, 208
HindIII	AAGCTT	1 cut(s)	1107
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	3 cut(s)	178, 449, 617
Hpy166II	GTNNAC	2 cut(s)	140, 208
Hpy188I	TCNGA	1 cut(s)	1225
Hpy188III	TCNNGA	4 cut(s)	103, 345, 524, 952
Hpy8I	GTNNAC	2 cut(s)	140, 208
Hpy99I	CGWCG	2 cut(s)	194, 209
HpyAV	CCTTC	4 cut(s)	849, 960, 964, 1255
HpyCH4III	ACNGT	3 cut(s)	470, 576, 611
HpyCH4IV	ACGT	2 cut(s)	749, 958
HpyCH4V	TGCA	7 cut(s)	367, 473, 779, 999, 1115, 1145, 1163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 413, 937
HpyF3I	CTNAG	3 cut(s)	258, 329, 694
HpySE526I	ACGT	2 cut(s)	749, 958
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	497, 978, 1010, 1208
HspAI	GCGC	2 cut(s)	426, 1189
Kzo9I	GATC	2 cut(s)	895, 1220
LmnI	GCTCC	3 cut(s)	131, 412, 1011
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	376, 766
MaeI	CTAG	3 cut(s)	828, 1041, 1291
MaeII	ACGT	2 cut(s)	749, 958
MaeIII	GTNAC	4 cut(s)	605, 616, 830, 1286
MalI	GATC	2 cut(s)	897, 1222
MboI	GATC	2 cut(s)	895, 1220
MboII	GAAGA	9 cut(s)	118, 187, 333, 539, 638, 683, 776, 1168, 1230
MhlI	GDGCHC	2 cut(s)	409, 418
MluCI	AATT	4 cut(s)	59, 230, 251, 914
MseI	TTAA	4 cut(s)	311, 636, 918, 1032
MslI	CAYNNNNRTG	2 cut(s)	816, 1150
MspI	CCGG	1 cut(s)	676
MspR9I	CCNGG	3 cut(s)	411, 666, 1278
Mva1269I	GAATGC	2 cut(s)	999, 1165
MvaI	CCWGG	3 cut(s)	411, 666, 1278
MwoI	GCNNNNNNNGC	3 cut(s)	201, 413, 937
NdeII	GATC	2 cut(s)	895, 1220
NlaIII	CATG	4 cut(s)	497, 978, 1010, 1208
NlaIV	GGNNCC	4 cut(s)	408, 663, 1086, 1128
NmuCI	GTSAC	1 cut(s)	605
NsbI	TGCGCA	2 cut(s)	427, 1190
PctI	GAATGC	2 cut(s)	999, 1165
PfeI	GAWTC	1 cut(s)	87
PfoI	TCCNGGA	1 cut(s)	1276
PinAI	ACCGGT	1 cut(s)	675
PkrI	GCNGC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	959
PpuMI	RGGWCCY	1 cut(s)	292
Psp1406I	AACGTT	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	3 cut(s)	409, 664, 1276
PspGI	CCWGG	3 cut(s)	409, 664, 1276
PspN4I	GGNNCC	4 cut(s)	408, 663, 1086, 1128
PspPI	GGNCC	4 cut(s)	292, 731, 740, 1046
PspPPI	RGGWCCY	1 cut(s)	292
RsaI	GTAC	7 cut(s)	38, 68, 566, 702, 891, 1019, 1062
RsaNI	GTAC	7 cut(s)	37, 67, 565, 701, 890, 1018, 1061
RseI	CAYNNNNRTG	2 cut(s)	816, 1150
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	4 cut(s)	311, 636, 918, 1032
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	2 cut(s)	895, 1220
Sau96I	GGNCC	4 cut(s)	292, 731, 740, 1046
ScrFI	CCNGG	3 cut(s)	411, 666, 1278
SduI	GDGCHC	2 cut(s)	409, 418
SfaNI	GCATC	2 cut(s)	376, 766
SinI	GGWCC	2 cut(s)	292, 740
SmiMI	CAYNNNNRTG	2 cut(s)	816, 1150
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	59, 230, 251, 914
SsiI	CCGC	2 cut(s)	129, 691
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	3 cut(s)	828, 1041, 1291
StyD4I	CCNGG	3 cut(s)	409, 664, 1276
TaaI	ACNGT	3 cut(s)	470, 576, 611
TaiI	ACGT	2 cut(s)	752, 961
TaqI	TCGA	4 cut(s)	207, 234, 370, 951
TasI	AATT	4 cut(s)	59, 230, 251, 914
TatI	WGTACW	3 cut(s)	564, 889, 1017
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	4 cut(s)	311, 636, 918, 1032
Tru9I	TTAA	4 cut(s)	311, 636, 918, 1032
TscAI	CASTG	5 cut(s)	435, 616, 1056, 1127, 1252
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	318, 505, 1212
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	5 cut(s)	435, 616, 1056, 1127, 1252
VpaK11BI	GGWCC	2 cut(s)	292, 740
XapI	RAATTY	2 cut(s)	230, 914
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	3 cut(s)	828, 1041, 1291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.