Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Forward (+)

7331662 .. 7334485

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAAGCTCTTATTGCTTCCACTTCCTTCTTCGTCCCCATCTCCAACTCTTCCTCCTCACACATTATCAATAACAGATTCTTCCCTTCATTTTATTCTCCCAACTTAAATTTCGGGACTTTTCGGAAAACTTCCTTGTCATCATCACACCTCGTCTTCTCATCTTCTGCAATTTCCGCACCGCCTTCTTCTACTGTTCTTACTCGAAACAGCTATTGGATGGTGTTATTGGATAAACCTCCGCATTGGGTTTCTTCCAAATCAGCCATGGTAGATTATTATGTCGAGATTCTTGCGAAAGTACTGGGAAACGAAAAAGATGCGCAAGTGAGTATATATGATGCTTCCTTTGATACCCATTTCGGGTTTTGTTGTCATATCGACGAAGATGCTTCACGACAGCTCGCTAGTTTACCTGGAGTAGTGTCTATTAGACCTGAACAGGATTACAGTTCAGAGAAGAAGAATTATGGCATTGGTAGCCATAAAGGTGTTTCATTGTTTGATCATGGGACAGTAAAACATTGGATGGTACGAATAGATAAGCCAGGAGTTGGGATTGTTACTAAAGCACAGATGGTTGATCATTGTGTTCAATTGCTATCCAAGGTTTTGTGGAATGAGAAGGATGCACAGATGTGTCTTTATCATGTTTCCTGGCAGTCTGATTTCGGATTTTGTTGTGATCTCGATGAAAGAAGTGCTGTGGAGTTAGCTGGCGTACCTGGTGTTCTTGCTGTTGTTCCTGATAACAGTTTCGAGTCACTAAACAAAGACTATGAAGGCGATAGTACGCAAGATTCAAGAGATCAAGATGATTCAGAGTCTCCTCCCGTAAAGACAAAGAAGCTGTTTATAACTGGACTGTCTTTCTACACATCTGAGAAGACATTACGTGCAGCATTTGAAGGGTTTGGTGAACTAGTGGAAGTCAAAATAATTATGGACAAAATATCGAAGAGATCAAAGGGCTATGCCTTTCTAGAGTACACGACAGAGGAAGCCGCAGGCACTGCACTAAAAGAGATGAATGGAAAGATTATCAACGGGTGGATGATAGTAGTAGATGTAGCCAAGACCAAACCGTTCAGGCAAAACAGAAGTCAACCAAGTTTCGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

374

Amino Acids

41.61

Weight (kDa)

5.95

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	71 - 159	1.2e-33	Multiple organellar RNA editing factor 1, MORF domain
MORF_dom	PF21864	174 - 264	2.8e-32	Multiple organellar RNA editing factor 1, MORF domain
RRM_1	PF00076	284 - 355	2.6e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	857
Acc16I	TGCGCA	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	554
AciI	CCGC	4 cut(s)	177, 182, 242, 1005
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	5 cut(s)	303, 534, 723, 793, 989
AfiI	CCNNNNNNNGG	3 cut(s)	363, 554, 1115
AgsI	TTSAA	3 cut(s)	596, 804, 908
AhlI	ACTAGT	1 cut(s)	922
AjnI	CCWGG	4 cut(s)	415, 547, 656, 724
AjuI	GAANNNNNNNTTGG	4 cut(s)	95, 127, 199, 231
AleI	CACNNNNGTG	1 cut(s)	637
AluBI	AGCT	5 cut(s)	8, 213, 403, 716, 850
AluI	AGCT	5 cut(s)	8, 213, 403, 716, 850
Alw26I	GTCTC	1 cut(s)	831
AlwNI	CAGNNNCTG	1 cut(s)	1013
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	1087, 1119
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	929
BanII	GRGCYC	1 cut(s)	1122
BbsI	GAAGAC	2 cut(s)	148, 893
BbvI	GCAGC	1 cut(s)	911
BccI	CCATC	4 cut(s)	47, 214, 523, 571
BcgI	CGANNNNNNTGC	6 cut(s)	275, 302, 309, 336, 371, 405
BciT130I	CCWGG	4 cut(s)	417, 549, 658, 726
BclI	TGATCA	2 cut(s)	505, 583
BcoDI	GTCTC	1 cut(s)	831
BcuI	ACTAGT	1 cut(s)	922
BfaI	CTAG	4 cut(s)	408, 923, 983, 1123
BisI	GCNGC	2 cut(s)	900, 1005
BlsI	GCNGC	2 cut(s)	901, 1006
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	4 cut(s)	417, 549, 658, 726
BmrFI	CCNGG	4 cut(s)	417, 549, 658, 726
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	4 cut(s)	310, 331, 379, 619
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	148, 893
BpmI	CTGGAG	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	896
BsaJI	CCNNGG	2 cut(s)	267, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 554, 1115
Bse1I	ACTGG	2 cut(s)	309, 865
BseBI	CCWGG	4 cut(s)	417, 549, 658, 726
BseDI	CCNNGG	2 cut(s)	267, 606
BseGI	GGATG	4 cut(s)	225, 534, 634, 1059
BseLI	CCNNNNNNNGG	3 cut(s)	363, 554, 1115
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	2 cut(s)	309, 865
BseRI	GAGGAG	2 cut(s)	46, 819
BseXI	GCAGC	1 cut(s)	911
BsgI	GTGCAG	2 cut(s)	918, 999
BslFI	GGGAC	3 cut(s)	20, 130, 526
BslI	CCNNNNNNNGG	3 cut(s)	363, 554, 1115
BsmAI	GTCTC	1 cut(s)	831
BsmFI	GGGAC	3 cut(s)	20, 130, 526
Bsp1286I	GDGCHC	1 cut(s)	1122
Bsp143I	GATC	5 cut(s)	505, 583, 685, 808, 962
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	4 cut(s)	177, 182, 242, 1005
BspCNI	CTCAG	1 cut(s)	874
BsrI	ACTGG	2 cut(s)	309, 865
BssECI	CCNNGG	2 cut(s)	267, 606
BssMI	GATC	5 cut(s)	505, 583, 685, 808, 962
BssT1I	CCWWGG	2 cut(s)	267, 606
Bst2UI	CCWGG	4 cut(s)	417, 549, 658, 726
Bst4CI	ACNGT	6 cut(s)	196, 452, 517, 755, 867, 1086
Bst6I	CTCTTC	2 cut(s)	55, 953
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstBAI	YACGTR	1 cut(s)	896
BstC8I	GCNNGC	3 cut(s)	405, 718, 1009
BstDEI	CTNAG	1 cut(s)	882
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	4 cut(s)	225, 534, 634, 1059
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	5 cut(s)	508, 586, 688, 811, 965
BstMAI	GTCTC	1 cut(s)	831
BstMBI	GATC	5 cut(s)	505, 583, 685, 808, 962
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 176, 480, 1013
BstNI	CCWGG	4 cut(s)	417, 549, 658, 726
BstSCI	CCNGG	4 cut(s)	415, 547, 656, 724
BstV1I	GCAGC	1 cut(s)	911
BstV2I	GAAGAC	2 cut(s)	148, 893
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	225, 534, 634, 1059
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	1 cut(s)	1011
Cac8I	GCNNGC	3 cut(s)	405, 718, 1009
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	5 cut(s)	302, 533, 722, 792, 988
CviAII	CATG	3 cut(s)	268, 509, 650
CviQI	GTAC	5 cut(s)	302, 533, 722, 792, 988
DdeI	CTNAG	1 cut(s)	882
DpnI	GATC	5 cut(s)	507, 585, 687, 810, 964
DpnII	GATC	5 cut(s)	505, 583, 685, 808, 962
Eam1104I	CTCTTC	2 cut(s)	55, 953
EarI	CTCTTC	2 cut(s)	55, 953
Eco130I	CCWWGG	2 cut(s)	267, 606
Eco24I	GRGCYC	1 cut(s)	1122
EcoRII	CCWGG	4 cut(s)	415, 547, 656, 724
EcoT14I	CCWWGG	2 cut(s)	267, 606
EcoT38I	GRGCYC	1 cut(s)	1122
ErhI	CCWWGG	2 cut(s)	267, 606
FaeI	CATG	3 cut(s)	271, 512, 653
FaqI	GGGAC	3 cut(s)	20, 130, 526
FatI	CATG	3 cut(s)	267, 508, 649
FbaI	TGATCA	2 cut(s)	505, 583
Fnu4HI	GCNGC	2 cut(s)	900, 1005
FokI	GGATG	4 cut(s)	232, 541, 641, 1066
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	2 cut(s)	900, 1005
FspBI	CTAG	4 cut(s)	408, 923, 983, 1123
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	900, 1005
GsuI	CTGGAG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	271, 512, 653
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	1106
HindII	GTYRAC	1 cut(s)	1106
HinfI	GANTC	6 cut(s)	78, 289, 761, 800, 818, 824
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	4 cut(s)	413, 920, 990, 1106
Hpy188I	TCNGA	6 cut(s)	126, 457, 667, 674, 823, 883
Hpy188III	TCNNGA	8 cut(s)	115, 286, 396, 689, 746, 804, 812, 983
Hpy8I	GTNNAC	4 cut(s)	413, 920, 990, 1106
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	6 cut(s)	37, 96, 195, 619, 776, 902
HpyCH4III	ACNGT	6 cut(s)	196, 452, 517, 755, 867, 1086
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	4 cut(s)	170, 632, 899, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 176, 480, 1013
HpyF3I	CTNAG	1 cut(s)	882
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	3 cut(s)	271, 512, 653
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	2 cut(s)	505, 583
Kzo9I	GATC	5 cut(s)	505, 583, 685, 808, 962
Lsp1109I	GCAGC	1 cut(s)	911
LweI	GCATC	4 cut(s)	310, 331, 379, 619
MabI	ACCWGGT	1 cut(s)	724
MaeI	CTAG	4 cut(s)	408, 923, 983, 1123
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	2 cut(s)	562, 762
MalI	GATC	5 cut(s)	507, 585, 687, 810, 964
MboI	GATC	5 cut(s)	505, 583, 685, 808, 962
MfeI	CAATTG	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	1122
MluCI	AATT	5 cut(s)	109, 171, 466, 596, 939
MlyI	GAGTC	2 cut(s)	770, 833
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	64, 67, 161, 249, 840, 991
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	2 cut(s)	489, 637
MspR9I	CCNGG	4 cut(s)	417, 549, 658, 726
MunI	CAATTG	1 cut(s)	596
MvaI	CCWGG	4 cut(s)	417, 549, 658, 726
MwoI	GCNNNNNNNGC	4 cut(s)	14, 176, 480, 1013
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	5 cut(s)	505, 583, 685, 808, 962
NlaIII	CATG	3 cut(s)	271, 512, 653
NmuCI	GTSAC	1 cut(s)	762
NsbI	TGCGCA	1 cut(s)	324
OliI	CACNNNNGTG	1 cut(s)	637
PfeI	GAWTC	4 cut(s)	78, 289, 800, 818
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	901, 1006
PleI	GAGTC	2 cut(s)	769, 832
PpsI	GAGTC	2 cut(s)	769, 832
Ppu21I	YACGTR	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	857
Psp6I	CCWGG	4 cut(s)	415, 547, 656, 724
PspGI	CCWGG	4 cut(s)	415, 547, 656, 724
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
PstNI	CAGNNNCTG	1 cut(s)	1013
RsaI	GTAC	5 cut(s)	303, 534, 723, 793, 989
RsaNI	GTAC	5 cut(s)	302, 533, 722, 792, 988
RseI	CAYNNNNRTG	2 cut(s)	489, 637
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	900, 1005
Sau3AI	GATC	5 cut(s)	505, 583, 685, 808, 962
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	2 cut(s)	770, 833
ScrFI	CCNGG	4 cut(s)	417, 549, 658, 726
SduI	GDGCHC	1 cut(s)	1122
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	4 cut(s)	310, 331, 379, 619
SmiMI	CAYNNNNRTG	2 cut(s)	489, 637
SpeI	ACTAGT	1 cut(s)	922
Sse9I	AATT	5 cut(s)	109, 171, 466, 596, 939
SsiI	CCGC	4 cut(s)	177, 182, 242, 1005
SspMI	CTAG	4 cut(s)	408, 923, 983, 1123
StyD4I	CCNGG	4 cut(s)	415, 547, 656, 724
StyI	CCWWGG	2 cut(s)	267, 606
TaaI	ACNGT	6 cut(s)	196, 452, 517, 755, 867, 1086
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	6 cut(s)	205, 285, 381, 690, 759, 956
TasI	AATT	5 cut(s)	109, 171, 466, 596, 939
TatI	WGTACW	2 cut(s)	301, 987
TauI	GCSGC	1 cut(s)	1007
TfiI	GAWTC	4 cut(s)	78, 289, 800, 818
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	1018
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	1 cut(s)	762
TspDTI	ATGAA	5 cut(s)	78, 486, 708, 795, 1043
TspRI	CASTG	1 cut(s)	1018
Van91I	CCANNNNNTGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	4 cut(s)	408, 923, 983, 1123
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.