RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G20930 AT3G20930 |
| fragaria_vesca | FvH4_7g05760 FvH4_7g05760 |
| malus_domestica | MD02G1255600.v1.1 |
| prunus_persica | Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1 |
| pyrus_communis | pycom02g21650 |
| rosa_chinensis | RchiOBHm_Chr1g0332801 |
| rosa_laevigata | RLG00000029643 |
| rosa_multiflora | Rmu_ssc0000157.1_g000008 |
| rosa_roxburghii | Rroxscaffold_4G00317970 |
| rosa_rugosa | Rorug01G0103600 |
| rosa_samantha | Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000 |
| rosa_wichuraiana | Rw1G010500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 255 |
| AciI | CCGC | 1 cut(s) | 554 |
| AcsI | RAATTY | 1 cut(s) | 327 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 173, 255, 640 |
| AgsI | TTSAA | 4 cut(s) | 204, 212, 650, 671 |
| AjnI | CCWGG | 3 cut(s) | 139, 386, 454 |
| AleI | CACNNNNGTG | 1 cut(s) | 367 |
| AluBI | AGCT | 4 cut(s) | 127, 592, 664, 746 |
| AluI | AGCT | 4 cut(s) | 127, 592, 664, 746 |
| AoxI | GGCC | 1 cut(s) | 844 |
| ApeKI | GCWGC | 4 cut(s) | 746, 749, 752, 755 |
| ApoI | RAATTY | 1 cut(s) | 327 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 68, 100, 155, 187 |
| AseI | ATTAAT | 1 cut(s) | 786 |
| AspS9I | GGNCC | 2 cut(s) | 705, 844 |
| AsuC2I | CCSGG | 1 cut(s) | 279 |
| AsuHPI | GGTGA | 1 cut(s) | 47 |
| AsuII | TTCGAA | 1 cut(s) | 265 |
| AvaII | GGWCC | 1 cut(s) | 705 |
| BbvI | GCAGC | 4 cut(s) | 733, 736, 739, 742 |
| BccI | CCATC | 1 cut(s) | 864 |
| BciT130I | CCWGG | 3 cut(s) | 141, 388, 456 |
| BcnI | CCSGG | 1 cut(s) | 279 |
| BfaI | CTAG | 3 cut(s) | 419, 443, 822 |
| BisI | GCNGC | 4 cut(s) | 747, 750, 753, 756 |
| BlsI | GCNGC | 4 cut(s) | 748, 751, 754, 757 |
| Bme1390I | CCNGG | 4 cut(s) | 141, 279, 388, 456 |
| Bme18I | GGWCC | 1 cut(s) | 705 |
| BmgT120I | GGNCC | 2 cut(s) | 705, 844 |
| BmiI | GGNNCC | 1 cut(s) | 845 |
| BmrFI | CCNGG | 4 cut(s) | 141, 279, 388, 456 |
| BmsI | GCATC | 3 cut(s) | 34, 55, 349 |
| Bpu14I | TTCGAA | 1 cut(s) | 265 |
| BpuMI | CCSGG | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 1 cut(s) | 278 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 811, 841 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 173, 255, 640 |
| Bse1I | ACTGG | 2 cut(s) | 260, 607 |
| BseBI | CCWGG | 3 cut(s) | 141, 388, 456 |
| BseDI | CCNNGG | 1 cut(s) | 278 |
| BseGI | GGATG | 2 cut(s) | 49, 801 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 173, 255, 640 |
| BseMII | CTCAG | 2 cut(s) | 62, 615 |
| BseNI | ACTGG | 2 cut(s) | 260, 607 |
| BseXI | GCAGC | 4 cut(s) | 733, 736, 739, 742 |
| BsgI | GTGCAG | 1 cut(s) | 741 |
| BshFI | GGCC | 1 cut(s) | 846 |
| BsiSI | CCGG | 1 cut(s) | 278 |
| BslFI | GGGAC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 173, 255, 640 |
| BsmFI | GGGAC | 1 cut(s) | 89 |
| BsnI | GGCC | 1 cut(s) | 846 |
| Bsp119I | TTCGAA | 1 cut(s) | 265 |
| Bsp143I | GATC | 2 cut(s) | 780, 854 |
| BspACI | CCGC | 1 cut(s) | 554 |
| BspANI | GGCC | 1 cut(s) | 846 |
| BspCNI | CTCAG | 2 cut(s) | 61, 616 |
| BspLI | GGNNCC | 1 cut(s) | 845 |
| BspT104I | TTCGAA | 1 cut(s) | 265 |
| BsrI | ACTGG | 2 cut(s) | 260, 607 |
| BssECI | CCNNGG | 1 cut(s) | 278 |
| BssMI | GATC | 2 cut(s) | 780, 854 |
| Bst2UI | CCWGG | 3 cut(s) | 141, 388, 456 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 197 |
| BstBI | TTCGAA | 1 cut(s) | 265 |
| BstC8I | GCNNGC | 2 cut(s) | 129, 436 |
| BstDEI | CTNAG | 3 cut(s) | 48, 534, 624 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 638 |
| BstF5I | GGATG | 2 cut(s) | 49, 801 |
| BstKTI | GATC | 2 cut(s) | 783, 857 |
| BstMBI | GATC | 2 cut(s) | 780, 854 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 752, 755 |
| BstNI | CCWGG | 3 cut(s) | 141, 388, 456 |
| BstSCI | CCNGG | 4 cut(s) | 139, 277, 386, 454 |
| BstV1I | GCAGC | 4 cut(s) | 733, 736, 739, 742 |
| BsuRI | GGCC | 1 cut(s) | 846 |
| BtsCI | GGATG | 2 cut(s) | 49, 801 |
| BtsIMutI | CAGTG | 2 cut(s) | 17, 253 |
| Cac8I | GCNNGC | 2 cut(s) | 129, 436 |
| Cfr13I | GGNCC | 2 cut(s) | 705, 844 |
| CviAII | CATG | 2 cut(s) | 101, 380 |
| DdeI | CTNAG | 3 cut(s) | 48, 534, 624 |
| DpnI | GATC | 2 cut(s) | 782, 856 |
| DpnII | GATC | 2 cut(s) | 780, 854 |
| Eco47I | GGWCC | 1 cut(s) | 705 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 638 |
| EcoRII | CCWGG | 3 cut(s) | 139, 386, 454 |
| FaeI | CATG | 2 cut(s) | 104, 383 |
| FaqI | GGGAC | 1 cut(s) | 89 |
| FatI | CATG | 2 cut(s) | 100, 379 |
| Fnu4HI | GCNGC | 4 cut(s) | 747, 750, 753, 756 |
| FokI | GGATG | 2 cut(s) | 56, 808 |
| Fsp4HI | GCNGC | 4 cut(s) | 747, 750, 753, 756 |
| FspBI | CTAG | 3 cut(s) | 419, 443, 822 |
| GluI | GCNGC | 4 cut(s) | 747, 750, 753, 756 |
| HaeIII | GGCC | 1 cut(s) | 846 |
| HapII | CCGG | 1 cut(s) | 278 |
| Hin1II | CATG | 2 cut(s) | 104, 383 |
| HindIII | AAGCTT | 2 cut(s) | 125, 590 |
| HinfI | GANTC | 2 cut(s) | 428, 491 |
| HpaII | CCGG | 1 cut(s) | 278 |
| HphI | GGTGA | 1 cut(s) | 47 |
| Hpy166II | GTNNAC | 3 cut(s) | 137, 184, 416 |
| Hpy188I | TCNGA | 3 cut(s) | 51, 496, 625 |
| Hpy188III | TCNNGA | 1 cut(s) | 638 |
| Hpy8I | GTNNAC | 3 cut(s) | 137, 184, 416 |
| HpyAV | CCTTC | 2 cut(s) | 34, 644 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 197 |
| HpyCH4IV | ACGT | 1 cut(s) | 133 |
| HpyCH4V | TGCA | 6 cut(s) | 15, 131, 218, 362, 434, 758 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 752, 755 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 534, 624 |
| HpySE526I | ACGT | 1 cut(s) | 133 |
| Hsp92II | CATG | 2 cut(s) | 104, 383 |
| Kzo9I | GATC | 2 cut(s) | 780, 854 |
| Lsp1109I | GCAGC | 4 cut(s) | 733, 736, 739, 742 |
| LweI | GCATC | 3 cut(s) | 34, 55, 349 |
| MaeI | CTAG | 3 cut(s) | 419, 443, 822 |
| MaeII | ACGT | 1 cut(s) | 133 |
| MaeIII | GTNAC | 2 cut(s) | 292, 598 |
| MalI | GATC | 2 cut(s) | 782, 856 |
| MboI | GATC | 2 cut(s) | 780, 854 |
| MboII | GAAGA | 1 cut(s) | 437 |
| MluCI | AATT | 2 cut(s) | 327, 874 |
| MlyI | GAGTC | 1 cut(s) | 485 |
| MnlI | CCTC | 6 cut(s) | 280, 506, 550, 634, 733, 837 |
| MseI | TTAA | 4 cut(s) | 5, 156, 786, 877 |
| MslI | CAYNNNNRTG | 1 cut(s) | 367 |
| MspI | CCGG | 1 cut(s) | 278 |
| MspR9I | CCNGG | 4 cut(s) | 141, 279, 388, 456 |
| MvaI | CCWGG | 3 cut(s) | 141, 388, 456 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 752, 755 |
| NciI | CCSGG | 1 cut(s) | 279 |
| NdeII | GATC | 2 cut(s) | 780, 854 |
| NlaIII | CATG | 2 cut(s) | 104, 383 |
| NlaIV | GGNNCC | 1 cut(s) | 845 |
| NmuCI | GTSAC | 1 cut(s) | 598 |
| NspV | TTCGAA | 1 cut(s) | 265 |
| OliI | CACNNNNGTG | 1 cut(s) | 367 |
| PfeI | GAWTC | 1 cut(s) | 428 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 255 |
| PkrI | GCNGC | 4 cut(s) | 748, 751, 754, 757 |
| PleI | GAGTC | 1 cut(s) | 485 |
| PpsI | GAGTC | 1 cut(s) | 485 |
| PshBI | ATTAAT | 1 cut(s) | 786 |
| Psp6I | CCWGG | 3 cut(s) | 139, 386, 454 |
| PspGI | CCWGG | 3 cut(s) | 139, 386, 454 |
| PspN4I | GGNNCC | 1 cut(s) | 845 |
| PspPI | GGNCC | 2 cut(s) | 705, 844 |
| RseI | CAYNNNNRTG | 1 cut(s) | 367 |
| SaqAI | TTAA | 4 cut(s) | 5, 156, 786, 877 |
| SatI | GCNGC | 4 cut(s) | 747, 750, 753, 756 |
| Sau3AI | GATC | 2 cut(s) | 780, 854 |
| Sau96I | GGNCC | 2 cut(s) | 705, 844 |
| SchI | GAGTC | 1 cut(s) | 485 |
| ScrFI | CCNGG | 4 cut(s) | 141, 279, 388, 456 |
| SetI | ASST | 9 cut(s) | 129, 136, 291, 342, 517, 594, 666, 707, 748 |
| SfaNI | GCATC | 3 cut(s) | 34, 55, 349 |
| SfuI | TTCGAA | 1 cut(s) | 265 |
| SinI | GGWCC | 1 cut(s) | 705 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 367 |
| Sse9I | AATT | 2 cut(s) | 327, 874 |
| SsiI | CCGC | 1 cut(s) | 554 |
| SspMI | CTAG | 3 cut(s) | 419, 443, 822 |
| StyD4I | CCNGG | 4 cut(s) | 139, 277, 386, 454 |
| TaaI | ACNGT | 2 cut(s) | 12, 197 |
| TaiI | ACGT | 1 cut(s) | 136 |
| TaqI | TCGA | 2 cut(s) | 265, 637 |
| TasI | AATT | 2 cut(s) | 327, 874 |
| TfiI | GAWTC | 1 cut(s) | 428 |
| Tru1I | TTAA | 4 cut(s) | 5, 156, 786, 877 |
| Tru9I | TTAA | 4 cut(s) | 5, 156, 786, 877 |
| TscAI | CASTG | 2 cut(s) | 17, 260 |
| TseFI | GTSAC | 1 cut(s) | 598 |
| TseI | GCWGC | 4 cut(s) | 746, 749, 752, 755 |
| Tsp45I | GTSAC | 1 cut(s) | 598 |
| TspDTI | ATGAA | 4 cut(s) | 126, 438, 712, 785 |
| TspGWI | ACGGA | 1 cut(s) | 752 |
| TspRI | CASTG | 2 cut(s) | 17, 260 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 255 |
| VpaK11BI | GGWCC | 1 cut(s) | 705 |
| VspI | ATTAAT | 1 cut(s) | 786 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 638 |
| XapI | RAATTY | 1 cut(s) | 327 |
| XspI | CTAG | 3 cut(s) | 419, 443, 822 |