Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Forward (+)

12231761 .. 12236032

Gene Structure 4272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAGTCTGTGTCTCCCTCCGCAACATTCATCGTATCCACAAAATTCTCACTGAAACCTCGCAAAACCCAGTCCCAAACCCGCACTACGAACCTCAGATTCCCCATCTCACCAACCCATAAGAACCCATTTACTTTTTCTTCTGTTTCTCACAGTTCTTGTAGTTGTTTCTCAGTTAAAACATGTGCAGCTTCAACATCAACAACAGCGACACCTTCCACTTCTCTTCCTTTATCTTCCACTTCCAGTGACAAACGCCACTGGGTTGTGCTCATGGAGGCTCCTCCACAAGGGGTCAATTCAAAACAAGAAGTTATTGAATACTATGTTAAAACCCTTCAAAGTGTTTTGGGCAATGAGAAGGATGCTCAAATGTGTATATACGATGCTTCTTGGGATACCCATTTTGGCTTTTGCTGTGATATTGAGGAAGAAACTTCCCACAAGCTCGCATGTTTACCGGGGGTTTTATCGGTTAAGCCTGACCCGGATTATAGTTCTGCAAAAAAGGATTATAGCCCACCAAATGTTCAATCAGGTTTTATGTCTTACCCTCAAAGTGGAAGTACTTTCTTATTTCCTCTTTCCAACACCAAAAGGTGGCTCGTTCGAATGGATAAACCCAGCATTGGGGTTGTTACAAAAGCACAAATGGTTGATTATTATGCTCAGATACTAACAAAGGTCTTGGGGAATGAGAAGGATGCACAAATGTGTATTTATCATGTTTCCTGGCAATCTAACTTTGGGTTCTGTTGTGAACTTGATGAAGAGTGTGCACGCGAAGTAGCTGGTGTTCCTGGTGTTTTATCTGTCGAGCCTGACAAGAATTGGGAGTCGGAGAACAAAGATTATGGAGGTAATAATTTGCAGAGTTCTATGGATCTGTCGACATCTGGAGAGGCAAGTGAAACAACCCCGACAAAAACAAAGAAACTTTTTGTTACTGGCCTATCATTTTATACATCTGAGAAAACCCTCCGAGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAATAATAATGGACAAAATTTCTAAAAGGTCCAAAGGTTATGCATTCATAGAATACACCACGGAGGAAGCTGCTAGTGCAGCACTCAGAGAGATGAATGGCAAGATCATTAATGGGTGGATGATAGTTGTTGATGTTGCCAAGACTAGCCCTCCAAGATACAGCAGGGGTCAGAGCAGACCAGCAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

405

Amino Acids

44.68

Weight (kDa)

7.48

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	890
AccII	CGCG	1 cut(s)	783
AciI	CCGC	2 cut(s)	21, 82
AclWI	GGATC	1 cut(s)	891
AcsI	RAATTY	2 cut(s)	44, 1038
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	5 cut(s)	290, 560, 600, 629, 630
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	7 cut(s)	195, 303, 320, 341, 533, 995, 1016
AjnI	CCWGG	2 cut(s)	731, 799
AleI	CACNNNNGTG	1 cut(s)	712
AluBI	AGCT	5 cut(s)	191, 448, 791, 1009, 1091
AluI	AGCT	5 cut(s)	191, 448, 791, 1009, 1091
Alw21I	GWGCWC	2 cut(s)	273, 781
Alw26I	GTCTC	1 cut(s)	18
Alw44I	GTGCAC	1 cut(s)	777
AlwI	GGATC	1 cut(s)	891
AoxI	GGCC	1 cut(s)	949
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	4 cut(s)	188, 986, 1091, 1100
ApoI	RAATTY	2 cut(s)	44, 1038
AseI	ATTAAT	1 cut(s)	1131
AspS9I	GGNCC	1 cut(s)	1050
AsuC2I	CCSGG	2 cut(s)	462, 488
AsuHPI	GGTGA	2 cut(s)	102, 1016
AsuII	TTCGAA	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	1050
BaeGI	GKGCMC	1 cut(s)	781
Bbv12I	GWGCWC	2 cut(s)	273, 781
BbvI	GCAGC	4 cut(s)	200, 998, 1078, 1112
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	733, 801
BciVI	GTATCC	2 cut(s)	46, 391
BcnI	CCSGG	2 cut(s)	462, 488
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	1095, 1167
BfuI	GTATCC	2 cut(s)	46, 391
BisI	GCNGC	4 cut(s)	189, 987, 1092, 1101
BlsI	GCNGC	4 cut(s)	190, 988, 1093, 1102
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	4 cut(s)	462, 488, 733, 801
Bme18I	GGWCC	1 cut(s)	1050
BmgT120I	GGNCC	1 cut(s)	1050
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	4 cut(s)	462, 488, 733, 801
BmrI	ACTGGG	2 cut(s)	64, 271
BmsI	GCATC	3 cut(s)	355, 376, 694
BmuI	ACTGGG	2 cut(s)	64, 271
BpmI	CTGGAG	1 cut(s)	918
Bpu14I	TTCGAA	1 cut(s)	610
BpuMI	CCSGG	2 cut(s)	462, 488
BsaJI	CCNNGG	2 cut(s)	461, 1080
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 1156, 1186
Bsc4I	CCNNNNNNNGG	5 cut(s)	290, 560, 600, 629, 630
Bse1I	ACTGG	4 cut(s)	70, 246, 266, 952
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	733, 801
BseDI	CCNNGG	2 cut(s)	461, 1080
BseGI	GGATG	3 cut(s)	370, 709, 1146
BseLI	CCNNNNNNNGG	5 cut(s)	290, 560, 600, 629, 630
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	5 cut(s)	109, 186, 683, 960, 1120
BseNI	ACTGG	4 cut(s)	70, 246, 266, 952
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	4 cut(s)	200, 998, 1078, 1112
BseYI	CCCAGC	1 cut(s)	623
BsgI	GTGCAG	2 cut(s)	207, 1119
Bsh1236I	CGCG	1 cut(s)	783
BshFI	GGCC	1 cut(s)	951
BsiHKAI	GWGCWC	2 cut(s)	273, 781
BsiSI	CCGG	2 cut(s)	461, 488
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	5 cut(s)	290, 560, 600, 629, 630
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	1064
BsnI	GGCC	1 cut(s)	951
Bsp119I	TTCGAA	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	273, 781
Bsp143I	GATC	2 cut(s)	883, 1125
BspACI	CCGC	2 cut(s)	21, 82
BspANI	GGCC	1 cut(s)	951
BspCNI	CTCAG	5 cut(s)	108, 185, 682, 961, 1119
BspFNI	CGCG	1 cut(s)	783
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	891
BspT104I	TTCGAA	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	4 cut(s)	70, 246, 266, 952
BssECI	CCNNGG	2 cut(s)	461, 1080
BssMI	GATC	2 cut(s)	883, 1125
Bst2UI	CCWGG	2 cut(s)	733, 801
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	2 cut(s)	231, 765
BstBI	TTCGAA	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	450, 781
BstDEI	CTNAG	5 cut(s)	95, 172, 669, 969, 1106
BstDSI	CCRYGG	1 cut(s)	1080
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	370, 709, 1146
BstFNI	CGCG	1 cut(s)	783
BstKTI	GATC	2 cut(s)	886, 1128
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	2 cut(s)	883, 1125
BstMWI	GCNNNNNNNGC	2 cut(s)	1097, 1100
BstNI	CCWGG	2 cut(s)	733, 801
BstNSI	RCATGY	2 cut(s)	186, 456
BstSCI	CCNGG	4 cut(s)	460, 486, 731, 799
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	1 cut(s)	783
BstV1I	GCAGC	4 cut(s)	200, 998, 1078, 1112
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuI	GTATCC	2 cut(s)	46, 391
BsuRI	GGCC	1 cut(s)	951
BtgI	CCRYGG	1 cut(s)	1080
BtsCI	GGATG	3 cut(s)	370, 709, 1146
BtsIMutI	CAGTG	3 cut(s)	50, 253, 259
Cac8I	GCNNGC	2 cut(s)	450, 781
Cfr13I	GGNCC	1 cut(s)	1050
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	4 cut(s)	183, 274, 453, 725
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	5 cut(s)	95, 172, 669, 969, 1106
DpnI	GATC	2 cut(s)	885, 1127
DpnII	GATC	2 cut(s)	883, 1125
Eam1104I	CTCTTC	2 cut(s)	231, 765
EarI	CTCTTC	2 cut(s)	231, 765
Eco47I	GGWCC	1 cut(s)	1050
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	731, 799
EcoT22I	ATGCAT	1 cut(s)	1066
FaeI	CATG	4 cut(s)	186, 277, 456, 728
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	182, 273, 452, 724
FauI	CCCGC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	890
Fnu4HI	GCNGC	4 cut(s)	189, 987, 1092, 1101
FokI	GGATG	3 cut(s)	377, 716, 1153
Fsp4HI	GCNGC	4 cut(s)	189, 987, 1092, 1101
FspBI	CTAG	2 cut(s)	1095, 1167
GluI	GCNGC	4 cut(s)	189, 987, 1092, 1101
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	918
HaeIII	GGCC	1 cut(s)	951
HapII	CCGG	2 cut(s)	461, 488
Hin1II	CATG	4 cut(s)	186, 277, 456, 728
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HinfI	GANTC	3 cut(s)	5, 99, 836
HpaII	CCGG	2 cut(s)	461, 488
HphI	GGTGA	2 cut(s)	102, 1016
Hpy166II	GTNNAC	4 cut(s)	458, 761, 779, 891
Hpy188I	TCNGA	7 cut(s)	98, 672, 841, 970, 983, 1109, 1194
Hpy188III	TCNNGA	1 cut(s)	897
Hpy8I	GTNNAC	4 cut(s)	458, 761, 779, 891
HpyAV	CCTTC	5 cut(s)	225, 347, 355, 694, 989
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	7 cut(s)	188, 503, 707, 779, 871, 1064, 1100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1097, 1100
HpyF3I	CTNAG	5 cut(s)	95, 172, 669, 969, 1106
Hsp92II	CATG	4 cut(s)	186, 277, 456, 728
Kzo9I	GATC	2 cut(s)	883, 1125
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	4 cut(s)	200, 998, 1078, 1112
LweI	GCATC	3 cut(s)	355, 376, 694
MaeI	CTAG	2 cut(s)	1095, 1167
MaeIII	GTNAC	3 cut(s)	248, 637, 943
MalI	GATC	2 cut(s)	885, 1127
MboI	GATC	2 cut(s)	883, 1125
MboII	GAAGA	5 cut(s)	132, 218, 228, 443, 782
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	2 cut(s)	273, 781
MluCI	AATT	5 cut(s)	44, 298, 829, 865, 1038
MlyI	GAGTC	2 cut(s)	14, 845
MmeI	TCCRAC	2 cut(s)	612, 819
Mph1103I	ATGCAT	1 cut(s)	1066
MseI	TTAA	5 cut(s)	177, 330, 477, 1020, 1131
MslI	CAYNNNNRTG	1 cut(s)	712
MspI	CCGG	2 cut(s)	461, 488
MspR9I	CCNGG	4 cut(s)	462, 488, 733, 801
Mva1269I	GAATGC	1 cut(s)	1064
MvaI	CCWGG	2 cut(s)	733, 801
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	2 cut(s)	1097, 1100
NciI	CCSGG	2 cut(s)	462, 488
NdeII	GATC	2 cut(s)	883, 1125
NlaIII	CATG	4 cut(s)	186, 277, 456, 728
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	2 cut(s)	186, 456
NspV	TTCGAA	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	712
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	1 cut(s)	1064
PfeI	GAWTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	4 cut(s)	190, 988, 1093, 1102
PleI	GAGTC	2 cut(s)	13, 844
PpsI	GAGTC	2 cut(s)	13, 844
PscI	ACATGT	1 cut(s)	182
PshBI	ATTAAT	1 cut(s)	1131
Psp6I	CCWGG	2 cut(s)	731, 799
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	731, 799
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	1050
PsrI	GAACNNNNNNTAC	2 cut(s)	780, 812
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	712
SalI	GTCGAC	1 cut(s)	889
SaqAI	TTAA	5 cut(s)	177, 330, 477, 1020, 1131
SatI	GCNGC	4 cut(s)	189, 987, 1092, 1101
Sau3AI	GATC	2 cut(s)	883, 1125
Sau96I	GGNCC	1 cut(s)	1050
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	2 cut(s)	14, 845
ScrFI	CCNGG	4 cut(s)	462, 488, 733, 801
SduI	GDGCHC	2 cut(s)	273, 781
SfaNI	GCATC	3 cut(s)	355, 376, 694
SfuI	TTCGAA	1 cut(s)	610
SinI	GGWCC	1 cut(s)	1050
SmiMI	CAYNNNNRTG	1 cut(s)	712
Sse9I	AATT	5 cut(s)	44, 298, 829, 865, 1038
SsiI	CCGC	2 cut(s)	21, 82
SspMI	CTAG	2 cut(s)	1095, 1167
StyD4I	CCNGG	4 cut(s)	460, 486, 731, 799
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	610, 816, 890
TasI	AATT	5 cut(s)	44, 298, 829, 865, 1038
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	5 cut(s)	177, 330, 477, 1020, 1131
Tru9I	TTAA	5 cut(s)	177, 330, 477, 1020, 1131
TscAI	CASTG	3 cut(s)	57, 253, 266
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	4 cut(s)	188, 986, 1091, 1100
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	19, 783, 1057, 1130
TspGWI	ACGGA	1 cut(s)	1097
TspRI	CASTG	3 cut(s)	57, 253, 266
Van91I	CCANNNNNTGG	1 cut(s)	600
VneI	GTGCAC	1 cut(s)	777
VpaK11BI	GGWCC	1 cut(s)	1050
VspI	ATTAAT	1 cut(s)	1131
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	2 cut(s)	44, 1038
XceI	RCATGY	2 cut(s)	186, 456
XmiI	GTMKAC	1 cut(s)	890
XspI	CTAG	2 cut(s)	1095, 1167
ZrmI	AGTACT	1 cut(s)	568
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.