Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Reverse (-)

30754872 .. 30758257

Gene Structure 3386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1255600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGTCTCTCTGTCCCCCCGCAGGAGTTATCGCATCCACAAGATTGTCATTCAAACCTCCCAAAACCCAGTCTCAGACCCCGACTCCCAACCTCCGATTCCCCTTCTCACCAACCCTCAACAACCCCTTTAATTTCTCTTCATTTTCCTTCACTTCTTGCCCTTGTTTCTCCGTTAAAACATCATGTGCTGCTTCAACTTCAGCGACAGCATCGCCTTCCACTTCTCTTCCTTCGTCTTCCGCTTCCAGCGACAACCGCCATTGGGTGGTGCTCATGGAGGCTCCTCCGCAAGGGGCGGCGATTTCCAGACAGCTAGTTATTGAATACTATGTCGAAACCCTTCGAACCGTTTTGGGCAATGAGAAGGATGCTCAAATGTGTATATATGATGCTGCTTGGGATACCCATTTCGGGTTTTGTTGTGATATTGACGAAGAAACTTCCTGCAAGCTCGCACGTTTACCGGGGGTTTTGTTGGTTAAGCCTGACCCGGATTATGTTTCTCAAAAGAAGGATTATAGTCCCCCAAATGTTAAGTCAAGTAATATGTCGTCCTCTCGAAGTGGAAGTGCTTTGTTGTTTCCTCTTTTGAATACAAAAAGGTGGCTTGTTAGAATGGATAAACCCAGCATTGGGGTTGTTACAAAGGCACAAATGGTGGATTATTATGCTCAAATACTAACAAAGGTCTTGGGGAATGAGAAGGATGCACAAATGTGTATTTATCATGTTTCCTGGCAATCTAACTTTGGGTTCTGTTGTGAACTTGATGAAGAGTGTGCACAGGAAGTTGCTGGTGTTCCTGGGGTTTTATCTGTTGAGCCTGACAAGAATTGGGAGTCGGAGAATAAAGATTATGGAGGTAGTTATTTACAGAATTCTACCAATCTCTCAACTTCTGGAGCGACAAGTGAAACAGCCCCCACAAAAACAAAGAAACTGTTTGTGACTGGCCTATCGTTTTATACATCCGAGAAAACCCTCCGTGCTGCATTTGAAGGCTATGGAGAGCTTGTTGAAGTTAAAATAATAATGGACAAAATTTCTAAAAGGTCCAAAGGTTATGCATTCATAGAATACACCACTGAGGAAGCTGCTAGTGTAGCTCTCAAAGAGATGAATGGCAAGATCATAAATGGCTGGATGATAGTCGTTGACGTTGCCAAGACCAGCCCTCCAAGATACAGTAGCAGGGGCCAGACCAGACCAGCAGCAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

409

Amino Acids

44.78

Weight (kDa)

7.42

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	86 - 177	3.7e-36	Multiple organellar RNA editing factor 1, MORF domain
MORF_dom	PF21864	201 - 290	2e-38	Multiple organellar RNA editing factor 1, MORF domain
RRM_1	PF00076	315 - 381	1.1e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	5 cut(s)	21, 243, 259, 290, 299
AcsI	RAATTY	2 cut(s)	880, 1044
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	7 cut(s)	23, 265, 268, 293, 414, 635, 636
AgsI	TTSAA	6 cut(s)	55, 198, 326, 595, 1001, 1022
AjnI	CCWGG	2 cut(s)	737, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	718
AluBI	AGCT	5 cut(s)	316, 454, 1015, 1097, 1109
AluI	AGCT	5 cut(s)	316, 454, 1015, 1097, 1109
Alw21I	GWGCWC	2 cut(s)	276, 787
Alw26I	GTCTC	2 cut(s)	12, 78
Alw44I	GTGCAC	1 cut(s)	783
AoxI	GGCC	2 cut(s)	955, 1198
ApaLI	GTGCAC	1 cut(s)	783
ApeKI	GCWGC	5 cut(s)	191, 395, 992, 1097, 1214
ApoI	RAATTY	2 cut(s)	880, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	1056, 1198
AsuC2I	CCSGG	2 cut(s)	468, 494
AsuHPI	GGTGA	1 cut(s)	102
AsuII	TTCGAA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	1056
BaeGI	GKGCMC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	276, 787
BbvI	GCAGC	4 cut(s)	178, 382, 979, 1084
BciT130I	CCWGG	2 cut(s)	739, 807
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	2 cut(s)	468, 494
BcoDI	GTCTC	2 cut(s)	12, 78
BfaI	CTAG	2 cut(s)	317, 1101
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	6 cut(s)	192, 300, 396, 993, 1098, 1215
BlsI	GCNGC	6 cut(s)	193, 301, 397, 994, 1099, 1216
Bme1390I	CCNGG	4 cut(s)	468, 494, 739, 807
Bme18I	GGWCC	1 cut(s)	1056
BmgT120I	GGNCC	2 cut(s)	1056, 1198
BmiI	GGNNCC	2 cut(s)	285, 1199
BmrFI	CCNGG	4 cut(s)	468, 494, 739, 807
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	5 cut(s)	44, 221, 361, 382, 700
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	924
Bpu14I	TTCGAA	1 cut(s)	346
BpuMI	CCSGG	2 cut(s)	468, 494
BsaJI	CCNNGG	2 cut(s)	467, 806
BsaXI	ACNNNNNCTCC	6 cut(s)	70, 100, 1002, 1032, 1162, 1192
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 265, 268, 293, 414, 635, 636
Bse1I	ACTGG	2 cut(s)	70, 958
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	739, 807
BseDI	CCNNGG	2 cut(s)	467, 806
BseGI	GGATG	5 cut(s)	35, 376, 715, 971, 1152
BseLI	CCNNNNNNNGG	7 cut(s)	23, 265, 268, 293, 414, 635, 636
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	89, 1080
BseNI	ACTGG	2 cut(s)	70, 958
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	4 cut(s)	178, 382, 979, 1084
BseYI	CCCAGC	1 cut(s)	629
BshFI	GGCC	2 cut(s)	957, 1200
BsiHKAI	GWGCWC	2 cut(s)	276, 787
BsiSI	CCGG	2 cut(s)	467, 494
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	7 cut(s)	23, 265, 268, 293, 414, 635, 636
BsmAI	GTCTC	2 cut(s)	12, 78
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	1070
BsnI	GGCC	2 cut(s)	957, 1200
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	276, 787
Bsp143I	GATC	1 cut(s)	1131
BspACI	CCGC	5 cut(s)	21, 243, 259, 290, 299
BspANI	GGCC	2 cut(s)	957, 1200
BspCNI	CTCAG	2 cut(s)	88, 1081
BspLI	GGNNCC	2 cut(s)	285, 1199
BspT104I	TTCGAA	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	70, 958
BssECI	CCNNGG	2 cut(s)	467, 806
BssMI	GATC	1 cut(s)	1131
Bst2UI	CCWGG	2 cut(s)	739, 807
Bst4CI	ACNGT	3 cut(s)	352, 945, 1190
Bst6I	CTCTTC	3 cut(s)	145, 234, 771
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	452, 456
BstDEI	CTNAG	2 cut(s)	75, 1089
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	5 cut(s)	35, 376, 715, 971, 1152
BstKTI	GATC	1 cut(s)	1134
BstMAI	GTCTC	2 cut(s)	12, 78
BstMBI	GATC	1 cut(s)	1131
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 1106
BstNI	CCWGG	2 cut(s)	739, 807
BstSCI	CCNGG	4 cut(s)	466, 492, 737, 805
BstSLI	GKGCMC	1 cut(s)	787
BstV1I	GCAGC	4 cut(s)	178, 382, 979, 1084
BstV2I	GAAGAC	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	957, 1200
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	5 cut(s)	35, 376, 715, 971, 1152
BtsIMutI	CAGTG	1 cut(s)	1086
Cac8I	GCNNGC	2 cut(s)	452, 456
Cfr13I	GGNCC	2 cut(s)	1056, 1198
CviAII	CATG	3 cut(s)	186, 277, 731
DdeI	CTNAG	2 cut(s)	75, 1089
DpnI	GATC	1 cut(s)	1133
DpnII	GATC	1 cut(s)	1131
Eam1104I	CTCTTC	3 cut(s)	145, 234, 771
EarI	CTCTTC	3 cut(s)	145, 234, 771
Eco47I	GGWCC	1 cut(s)	1056
Eco57I	CTGAAG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	2 cut(s)	737, 805
EcoT22I	ATGCAT	1 cut(s)	1072
FaeI	CATG	3 cut(s)	189, 280, 734
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	3 cut(s)	185, 276, 730
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	6 cut(s)	192, 300, 396, 993, 1098, 1215
FokI	GGATG	5 cut(s)	22, 383, 722, 958, 1159
Fsp4HI	GCNGC	6 cut(s)	192, 300, 396, 993, 1098, 1215
FspBI	CTAG	2 cut(s)	317, 1101
GluI	GCNGC	6 cut(s)	192, 300, 396, 993, 1098, 1215
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	2 cut(s)	957, 1200
HapII	CCGG	2 cut(s)	467, 494
Hin1II	CATG	3 cut(s)	189, 280, 734
HincII	GTYRAC	1 cut(s)	1159
HindII	GTYRAC	1 cut(s)	1159
HinfI	GANTC	4 cut(s)	5, 85, 99, 842
HpaII	CCGG	2 cut(s)	467, 494
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	4 cut(s)	464, 767, 785, 1159
Hpy188I	TCNGA	4 cut(s)	78, 98, 847, 976
Hpy188III	TCNNGA	3 cut(s)	309, 561, 903
Hpy8I	GTNNAC	4 cut(s)	464, 767, 785, 1159
HpyAV	CCTTC	9 cut(s)	115, 160, 228, 243, 353, 361, 508, 700, 995
HpyCH4III	ACNGT	3 cut(s)	352, 945, 1190
HpyCH4IV	ACGT	2 cut(s)	460, 1161
HpyCH4V	TGCA	5 cut(s)	450, 713, 785, 995, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 1106
HpyF3I	CTNAG	2 cut(s)	75, 1089
HpySE526I	ACGT	2 cut(s)	460, 1161
Hsp92II	CATG	3 cut(s)	189, 280, 734
Kzo9I	GATC	1 cut(s)	1131
LmnI	GCTCC	2 cut(s)	289, 905
Lsp1109I	GCAGC	4 cut(s)	178, 382, 979, 1084
LweI	GCATC	5 cut(s)	44, 221, 361, 382, 700
MaeI	CTAG	2 cut(s)	317, 1101
MaeII	ACGT	2 cut(s)	460, 1161
MaeIII	GTNAC	2 cut(s)	643, 949
MalI	GATC	1 cut(s)	1133
MboI	GATC	1 cut(s)	1131
MboII	GAAGA	5 cut(s)	132, 221, 231, 449, 788
MhlI	GDGCHC	2 cut(s)	276, 787
MluCI	AATT	4 cut(s)	133, 835, 880, 1044
MlyI	GAGTC	3 cut(s)	14, 79, 851
MmeI	TCCRAC	1 cut(s)	825
Mph1103I	ATGCAT	1 cut(s)	1072
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	5 cut(s)	132, 177, 483, 537, 1026
MslI	CAYNNNNRTG	1 cut(s)	718
MspI	CCGG	2 cut(s)	467, 494
MspR9I	CCNGG	4 cut(s)	468, 494, 739, 807
Mva1269I	GAATGC	1 cut(s)	1070
MvaI	CCWGG	2 cut(s)	739, 807
MwoI	GCNNNNNNNGC	2 cut(s)	258, 1106
NciI	CCSGG	2 cut(s)	468, 494
NdeII	GATC	1 cut(s)	1131
NlaIII	CATG	3 cut(s)	189, 280, 734
NlaIV	GGNNCC	2 cut(s)	285, 1199
NmuCI	GTSAC	1 cut(s)	949
NsiI	ATGCAT	1 cut(s)	1072
NspV	TTCGAA	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	718
PctI	GAATGC	1 cut(s)	1070
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	6 cut(s)	193, 301, 397, 994, 1099, 1216
PleI	GAGTC	3 cut(s)	13, 79, 850
PpsI	GAGTC	3 cut(s)	13, 79, 850
Psp6I	CCWGG	2 cut(s)	737, 805
PspFI	CCCAGC	1 cut(s)	629
PspGI	CCWGG	2 cut(s)	737, 805
PspN4I	GGNNCC	2 cut(s)	285, 1199
PspPI	GGNCC	2 cut(s)	1056, 1198
RseI	CAYNNNNRTG	1 cut(s)	718
SaqAI	TTAA	5 cut(s)	132, 177, 483, 537, 1026
SatI	GCNGC	6 cut(s)	192, 300, 396, 993, 1098, 1215
Sau3AI	GATC	1 cut(s)	1131
Sau96I	GGNCC	2 cut(s)	1056, 1198
SchI	GAGTC	3 cut(s)	14, 79, 851
ScrFI	CCNGG	4 cut(s)	468, 494, 739, 807
SduI	GDGCHC	2 cut(s)	276, 787
SfaNI	GCATC	5 cut(s)	44, 221, 361, 382, 700
SfuI	TTCGAA	1 cut(s)	346
SinI	GGWCC	1 cut(s)	1056
SmiMI	CAYNNNNRTG	1 cut(s)	718
Sse9I	AATT	4 cut(s)	133, 835, 880, 1044
SsiI	CCGC	5 cut(s)	21, 243, 259, 290, 299
SspMI	CTAG	2 cut(s)	317, 1101
StyD4I	CCNGG	4 cut(s)	466, 492, 737, 805
TaaI	ACNGT	3 cut(s)	352, 945, 1190
TaiI	ACGT	2 cut(s)	463, 1164
TaqI	TCGA	3 cut(s)	336, 346, 562
TasI	AATT	4 cut(s)	133, 835, 880, 1044
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	5 cut(s)	132, 177, 483, 537, 1026
Tru9I	TTAA	5 cut(s)	132, 177, 483, 537, 1026
TscAI	CASTG	1 cut(s)	1093
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	5 cut(s)	191, 395, 992, 1097, 1214
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	4 cut(s)	132, 789, 1063, 1136
TspGWI	ACGGA	2 cut(s)	163, 977
TspRI	CASTG	1 cut(s)	1093
Van91I	CCANNNNNTGG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	783
VpaK11BI	GGWCC	1 cut(s)	1056
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	2 cut(s)	880, 1044
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	2 cut(s)	317, 1101
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.