Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Forward (+)

12329083 .. 12330169

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G080400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAACTTTGCATATGGAGGGACAGGTGTTTTTGATACAGTGTTTGGTGGACCAAACTTGACCACCCAAATCGACTTTTTCCAACAGCTGCTTGAACAAAAACTCTATAGTACCAAAAATGACGTCGTTAATTCGTCCATTGCTCTCGTATCAGTTGCGGGTAACGACTACGCTGCTTATTTTGGCAACCACACTGAGGTAAGTGGCCTATTATTTTATACATTTGGGAAAACCCTCCGAGCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAATAATAATGGACAAAATTTCTAAAAGGTCCAAAGGTTATGCATTCATAGAATACACCACGGAGGAAGCTGCTAGTGCAGCACTCAGAGAGATGAATGGCAAGATCATTAATGGCTGGATGATAGTTGTTGATGTTGCCAAGACTAGCCCTCCAAGATACAGCAGGGGTCAGAGCAGACCAGCAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

157

Amino Acids

17.19

Weight (kDa)

7.89

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AciI	CCGC	2 cut(s)	158, 243
AcsI	RAATTY	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	95, 251, 272
AluBI	AGCT	3 cut(s)	88, 265, 347
AluI	AGCT	3 cut(s)	88, 265, 347
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	88, 173, 347, 356
ApoI	RAATTY	1 cut(s)	294
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AseI	ATTAAT	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	50, 306
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	50, 306
BbvI	GCAGC	4 cut(s)	75, 160, 334, 368
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BfaI	CTAG	2 cut(s)	351, 423
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	5 cut(s)	89, 174, 243, 348, 357
BlsI	GCNGC	5 cut(s)	90, 175, 244, 349, 358
Bme18I	GGWCC	2 cut(s)	50, 306
BmgT120I	GGNCC	2 cut(s)	50, 306
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	186, 376
BseXI	GCAGC	4 cut(s)	75, 160, 334, 368
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	2 cut(s)	158, 243
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	187, 375
BsrDI	GCAATG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	381
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	195, 362
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	402
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 356
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	4 cut(s)	75, 160, 334, 368
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	45, 192
Cfr13I	GGNCC	2 cut(s)	50, 306
Csp6I	GTAC	1 cut(s)	111
CviJI	RGCY	8 cut(s)	88, 207, 242, 255, 265, 347, 393, 426
CviKI_1	RGCY	8 cut(s)	88, 207, 242, 255, 265, 347, 393, 426
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	2 cut(s)	195, 362
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	50, 306
EcoT22I	ATGCAT	1 cut(s)	322
FaiI	YATR	6 cut(s)	13, 15, 108, 219, 318, 326
FaqI	GGGAC	1 cut(s)	34
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	5 cut(s)	89, 174, 243, 348, 357
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	5 cut(s)	89, 174, 243, 348, 357
FspBI	CTAG	2 cut(s)	351, 423
GluI	GCNGC	5 cut(s)	89, 174, 243, 348, 357
HaeIII	GGCC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	123
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	3 cut(s)	239, 365, 450
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	11, 320, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 356
HpyF3I	CTNAG	2 cut(s)	195, 362
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	381
LpnPI	CCDG	3 cut(s)	9, 379, 427
Lsp1109I	GCAGC	4 cut(s)	75, 160, 334, 368
MaeI	CTAG	2 cut(s)	351, 423
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MluCI	AATT	2 cut(s)	130, 294
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	11, 190, 245, 334, 438
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	129, 276, 387
MspA1I	CMGCKG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	353, 356
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	322
PctI	GAATGC	1 cut(s)	320
PkrI	GCNGC	5 cut(s)	90, 175, 244, 349, 358
PshBI	ATTAAT	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	50, 306
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	129, 276, 387
SatI	GCNGC	5 cut(s)	89, 174, 243, 348, 357
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	2 cut(s)	50, 306
SetI	ASST	8 cut(s)	28, 90, 126, 201, 267, 308, 316, 349
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	50, 306
Sse9I	AATT	2 cut(s)	130, 294
SsiI	CCGC	2 cut(s)	158, 243
SspMI	CTAG	2 cut(s)	351, 423
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	130, 294
TauI	GCSGC	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	129, 276, 387
Tru9I	TTAA	3 cut(s)	129, 276, 387
TscAI	CASTG	2 cut(s)	45, 199
TseI	GCWGC	4 cut(s)	88, 173, 347, 356
TspDTI	ATGAA	3 cut(s)	17, 313, 386
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	45, 199
VpaK11BI	GGWCC	2 cut(s)	50, 306
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	294
XspI	CTAG	2 cut(s)	351, 423
ZraI	GACGTC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.