Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Reverse (-)

43637379 .. 43641730

Gene Structure 4352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAAGTCTCTCTCTCCCTCCGCAACAGTCACCATATCCAACAGCTACTCATTCAGAGCTAACAAAACCCACTCCCAATCCCCTTGTACCAACCTCAGATTCCCCATCTCACAAACCCATCAAAACCCATCAACTTTTTGTCTCAGTTGTTGCAACAAGTGTTTTTCTATTAAAGCATGTGCAGCTTCAACATCAACAGCACCCTCAGCTTCAACTTCCCGCCACTGGATAGTGCTTATGGATACTCCTCCACAAGGGGTCATTTCCAAACAACAAGTCATTGAATACTATGTTAAAACCCTTCAAAGAGTTTTGGGCAAGTTTACCGGGGTTTTATCAGTTAAGCCTGACCCAGATTTTGGTTCTGTGAAAAAGGATTACAGTTTTTCAAATGTTCAAAGTGCAAGTACTCTGTTATTTCCACTTGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACCGGGGATTGGAGTTGTTACAAAGGCGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCCTGGAAATCTAACTTTGGGTTCTGTTGTGAACTTGATGAAGAATCTGCAAGCAATCTAGCAAGTGTTCCTGGTGTTTTATCTGTTCAGCCAGACAAGAGTTATGACTCAGAAAATAAAGACTATGGAGATCCTGTTCTATATGATGGCATTACTGTTAAGTTGCTAAGCATGTATAAAGGTGTATTTAATTCTCGTGGATGTAATGACATAAAGAAATCTAAGGATGTGTCAATCTCTGTGGAGGCAAGTCAAACAACCCCCACAAGAACAAAGAAGCTTTTTGTGACTGGCTTATCGTTTTATACATCTGAGAAAACCCTCCGAGAAGCATTTGAAGGCTTTGGTCAGCTTGTTGAAGTAAAAATAATAATGGACAAGATTTCTAAAAGGTCCAAAGGCTATGCATTCATAGAATACACTACAGAGGAAGCTGCTGCTGCTGCACTCAATGAGATGAATGGCAAGGCAAGAGCATTCCTTTTTATCATTAATGGCTGGATGATAGTTGTTGATGTTGCCAAGACTAGCCCTCCAAGATATAGCAGGGGCCAAAGCAGATCAGCAGCAACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

382

Amino Acids

42.17

Weight (kDa)

9.22

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	74 - 107	2.6e-09	Multiple organellar RNA editing factor 1, MORF domain
MORF_dom	PF21864	146 - 233	1e-38	Multiple organellar RNA editing factor 1, MORF domain
RRM_1	PF00076	284 - 346	8.5e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	359, 441
AciI	CCGC	2 cut(s)	21, 220
AclWI	GGATC	1 cut(s)	695
AfaI	GTAC	2 cut(s)	88, 409
AfiI	CCNNNNNNNGG	5 cut(s)	225, 254, 359, 441, 470
AgsI	TTSAA	8 cut(s)	189, 213, 284, 305, 390, 398, 908, 929
AjnI	CCWGG	2 cut(s)	572, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	553
AloI	GAACNNNNNNTCC	2 cut(s)	690, 722
AluBI	AGCT	7 cut(s)	45, 59, 185, 209, 850, 922, 1004
AluI	AGCT	7 cut(s)	45, 59, 185, 209, 850, 922, 1004
Alw26I	GTCTC	2 cut(s)	12, 146
AlwI	GGATC	1 cut(s)	695
AoxI	GGCC	1 cut(s)	1120
ApeKI	GCWGC	6 cut(s)	182, 1004, 1007, 1010, 1013, 1136
ArsI	GACNNNNNNTTYG	4 cut(s)	261, 293, 341, 373
AseI	ATTAAT	1 cut(s)	1062
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	2 cut(s)	963, 1120
AsuC2I	CCSGG	2 cut(s)	328, 465
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	963
BauI	CACGAG	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	194, 991, 994, 997, 1000
BccI	CCATC	4 cut(s)	113, 126, 136, 710
BciT130I	CCWGG	2 cut(s)	574, 642
BciVI	GTATCC	1 cut(s)	235
BcnI	CCSGG	2 cut(s)	328, 465
BcoDI	GTCTC	2 cut(s)	12, 146
BfaI	CTAG	2 cut(s)	629, 1098
BfmI	CTRYAG	1 cut(s)	993
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	6 cut(s)	183, 1005, 1008, 1011, 1014, 1137
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	6 cut(s)	184, 1006, 1009, 1012, 1015, 1138
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	4 cut(s)	328, 465, 574, 642
Bme18I	GGWCC	1 cut(s)	963
BmgT120I	GGNCC	2 cut(s)	963, 1120
BmiI	GGNNCC	1 cut(s)	1121
BmrFI	CCNGG	4 cut(s)	328, 465, 574, 642
BmsI	GCATC	1 cut(s)	535
Bpu10I	CCTNAGC	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	451
BpuMI	CCSGG	2 cut(s)	328, 465
BsaJI	CCNNGG	2 cut(s)	327, 464
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 1087, 1117
Bsc4I	CCNNNNNNNGG	5 cut(s)	225, 254, 359, 441, 470
Bse1I	ACTGG	3 cut(s)	230, 446, 865
BseBI	CCWGG	2 cut(s)	574, 642
BseDI	CCNNGG	2 cut(s)	327, 464
BseGI	GGATG	3 cut(s)	776, 802, 1077
BseLI	CCNNNNNNNGG	5 cut(s)	225, 254, 359, 441, 470
BseMII	CTCAG	5 cut(s)	109, 157, 219, 693, 873
BseNI	ACTGG	3 cut(s)	230, 446, 865
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	5 cut(s)	194, 991, 994, 997, 1000
BsgI	GTGCAG	2 cut(s)	201, 999
BshFI	GGCC	1 cut(s)	1122
BsiSI	CCGG	2 cut(s)	327, 464
BslI	CCNNNNNNNGG	5 cut(s)	225, 254, 359, 441, 470
BsmAI	GTCTC	2 cut(s)	12, 146
BsmI	GAATGC	2 cut(s)	977, 1046
BsnI	GGCC	1 cut(s)	1122
Bsp119I	TTCGAA	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	700, 1130
Bsp1720I	GCTNAGC	1 cut(s)	737
BspACI	CCGC	2 cut(s)	21, 220
BspANI	GGCC	1 cut(s)	1122
BspCNI	CTCAG	5 cut(s)	108, 156, 218, 692, 874
BspLI	GGNNCC	1 cut(s)	1121
BspPI	GGATC	1 cut(s)	695
BspT104I	TTCGAA	1 cut(s)	451
BsrI	ACTGG	3 cut(s)	230, 446, 865
BssECI	CCNNGG	2 cut(s)	327, 464
BssMI	GATC	2 cut(s)	700, 1130
BssSI	CACGAG	1 cut(s)	765
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	574, 642
Bst4CI	ACNGT	3 cut(s)	28, 383, 727
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	7 cut(s)	95, 143, 205, 679, 737, 792, 882
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	776, 802, 1077
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	2 cut(s)	703, 1133
BstMAI	GTCTC	2 cut(s)	12, 146
BstMBI	GATC	2 cut(s)	700, 1130
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 206, 1010, 1013
BstNI	CCWGG	2 cut(s)	574, 642
BstNSI	RCATGY	2 cut(s)	180, 745
BstSCI	CCNGG	4 cut(s)	326, 463, 572, 640
BstSFI	CTRYAG	1 cut(s)	993
BstV1I	GCAGC	5 cut(s)	194, 991, 994, 997, 1000
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	1122
BtsCI	GGATG	3 cut(s)	776, 802, 1077
BtsIMutI	CAGTG	2 cut(s)	223, 439
Cac8I	GCNNGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	963, 1120
Csp6I	GTAC	2 cut(s)	87, 408
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	3 cut(s)	177, 566, 742
CviQI	GTAC	2 cut(s)	87, 408
DdeI	CTNAG	7 cut(s)	95, 143, 205, 679, 737, 792, 882
DpnI	GATC	2 cut(s)	702, 1132
DpnII	GATC	2 cut(s)	700, 1130
Eco47I	GGWCC	1 cut(s)	963
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	572, 640
EcoT22I	ATGCAT	1 cut(s)	979
FaeI	CATG	3 cut(s)	180, 569, 745
FatI	CATG	3 cut(s)	176, 565, 741
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	6 cut(s)	183, 1005, 1008, 1011, 1014, 1137
FokI	GGATG	3 cut(s)	783, 809, 1084
Fsp4HI	GCNGC	6 cut(s)	183, 1005, 1008, 1011, 1014, 1137
FspBI	CTAG	2 cut(s)	629, 1098
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	6 cut(s)	183, 1005, 1008, 1011, 1014, 1137
HaeIII	GGCC	1 cut(s)	1122
HapII	CCGG	2 cut(s)	327, 464
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	180, 569, 745
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	3 cut(s)	99, 614, 677
HpaII	CCGG	2 cut(s)	327, 464
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	324, 602
Hpy188I	TCNGA	5 cut(s)	56, 98, 682, 883, 896
Hpy8I	GTNNAC	2 cut(s)	324, 602
HpyAV	CCTTC	2 cut(s)	311, 902
HpyCH4III	ACNGT	3 cut(s)	28, 383, 727
HpyCH4V	TGCA	7 cut(s)	153, 182, 404, 548, 620, 977, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 206, 1010, 1013
HpyF3I	CTNAG	7 cut(s)	95, 143, 205, 679, 737, 792, 882
Hsp92II	CATG	3 cut(s)	180, 569, 745
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	2 cut(s)	700, 1130
Lsp1109I	GCAGC	5 cut(s)	194, 991, 994, 997, 1000
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	629, 1098
MaeIII	GTNAC	3 cut(s)	28, 478, 856
MalI	GATC	2 cut(s)	702, 1132
MboI	GATC	2 cut(s)	700, 1130
MboII	GAAGA	1 cut(s)	623
MflI	RGATCY	1 cut(s)	700
MluCI	AATT	1 cut(s)	760
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	28, 104, 214, 258, 808, 902, 991, 1113
Mph1103I	ATGCAT	1 cut(s)	979
MseI	TTAA	6 cut(s)	171, 294, 342, 729, 759, 1062
MslI	CAYNNNNRTG	1 cut(s)	553
MspI	CCGG	2 cut(s)	327, 464
MspR9I	CCNGG	4 cut(s)	328, 465, 574, 642
Mva1269I	GAATGC	2 cut(s)	977, 1046
MvaI	CCWGG	2 cut(s)	574, 642
MwoI	GCNNNNNNNGC	4 cut(s)	182, 206, 1010, 1013
NciI	CCSGG	2 cut(s)	328, 465
NdeII	GATC	2 cut(s)	700, 1130
NlaIII	CATG	3 cut(s)	180, 569, 745
NlaIV	GGNNCC	1 cut(s)	1121
NmuCI	GTSAC	2 cut(s)	28, 856
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	2 cut(s)	180, 745
NspV	TTCGAA	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	553
PctI	GAATGC	2 cut(s)	977, 1046
PfeI	GAWTC	2 cut(s)	99, 614
PflMI	CCANNNNNTGG	2 cut(s)	359, 441
PfoI	TCCNGGA	1 cut(s)	572
PkrI	GCNGC	6 cut(s)	184, 1006, 1009, 1012, 1015, 1138
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	1062
Psp6I	CCWGG	2 cut(s)	572, 640
PspGI	CCWGG	2 cut(s)	572, 640
PspN4I	GGNNCC	1 cut(s)	1121
PspPI	GGNCC	2 cut(s)	963, 1120
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	2 cut(s)	88, 409
RsaNI	GTAC	2 cut(s)	87, 408
RseI	CAYNNNNRTG	1 cut(s)	553
SaqAI	TTAA	6 cut(s)	171, 294, 342, 729, 759, 1062
SatI	GCNGC	6 cut(s)	183, 1005, 1008, 1011, 1014, 1137
Sau3AI	GATC	2 cut(s)	700, 1130
Sau96I	GGNCC	2 cut(s)	963, 1120
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	4 cut(s)	328, 465, 574, 642
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	993
SfuI	TTCGAA	1 cut(s)	451
SinI	GGWCC	1 cut(s)	963
SmiMI	CAYNNNNRTG	1 cut(s)	553
Sse9I	AATT	1 cut(s)	760
SsiI	CCGC	2 cut(s)	21, 220
SspMI	CTAG	2 cut(s)	629, 1098
StyD4I	CCNGG	4 cut(s)	326, 463, 572, 640
TaaI	ACNGT	3 cut(s)	28, 383, 727
TaqI	TCGA	1 cut(s)	451
TasI	AATT	1 cut(s)	760
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	99, 614
Tru1I	TTAA	6 cut(s)	171, 294, 342, 729, 759, 1062
Tru9I	TTAA	6 cut(s)	171, 294, 342, 729, 759, 1062
TscAI	CASTG	2 cut(s)	230, 446
TseFI	GTSAC	2 cut(s)	28, 856
TseI	GCWGC	6 cut(s)	182, 1004, 1007, 1010, 1013, 1136
Tsp45I	GTSAC	2 cut(s)	28, 856
TspDTI	ATGAA	4 cut(s)	17, 624, 970, 1043
TspRI	CASTG	2 cut(s)	230, 446
Van91I	CCANNNNNTGG	2 cut(s)	359, 441
VpaK11BI	GGWCC	1 cut(s)	963
VspI	ATTAAT	1 cut(s)	1062
XagI	CCTNNNNNAGG	1 cut(s)	252
XceI	RCATGY	2 cut(s)	180, 745
XspI	CTAG	2 cut(s)	629, 1098
ZrmI	AGTACT	1 cut(s)	409
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.