Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Reverse (-)

17219061 .. 17222882

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGACTCTCGGCTCAATGGCTCTGCTCGTCTCATGCTGGTTTCAGATCTTGATTACACAATGGTGGATCATGATGATCCTCGAAATACTTCTCTTCTTCGGTTCAATGCGCTATGGGAAGCATATTATCGCCATGATTCTCTGCTCGTATTTTCAACCGGAAGATCACCTCTATCTTACAAACCCTTGCGGAATGAGAAGCCCTTGTTGACGCCCGATATTACTATCATGTCTGTTGGAACTGAGATTATCTACGGTGAGGGTGACGCAATGCTACCCGATGATGGTTGGCAACACTATCTCAATCACAATTGGGATAGAAATATTGTTGTCGAGGAAACAACTAAGTTTCCACAACTAACTCCTCAGGCGGAGGCAGAGCAACGACCTCACAAGGTTAGCTTTTATGTAGACAAGGTTGAGGCAACTGAGATAATGAATGTTCTGTCAGAACGGTTGGCGAAACGTGGGTTAGATGTAAAGATAATATATAGCAGTGGTATTGCTTTGGATGTGTTACCAAAAGGTGCTGGCAAAGGGCAAGCTCTTGCATATCTGTTAAAGAAATTCAAAATTGATGGCAAGCTGCCCTGCAATACAATTGTTTGTGGTGACTCTGGAAATGATGCCGAACTCTTCACTCTTCCTGAAGTCTATGGTGTCATGGTTGGTAATGCACAGGAAGAATTGTCACACTGGTATGCACAAAACGCAAAGAGCAATAATCGCATATTGCATGCAACTGAGAGATGTGCAGCTGGGATCTTACAAGCCCTTGGTAATTTTCATTTAGGTCCAAATGTATCGCCAAGAGATATCAAAGACTTCCAAAAGTGCAAAGTGAACATTTTCAGCCCCGCTTATGAAGTGGTAAAGTTCTATCTGTTTTATGAGAAATGGCGACGTGCAGAGGTAGAGAAATCAGAGCAGTATATGCAGAACTTAAGATCGATCTTTCATTCATTGGGTGTCTTTGTCCATCCCTCGGGAGTGGAGCTACCTCTCCACCAGTGCATAGATGCAATGGCAAGGTTGTATGGAGATAAGCAAGGAAATCAATTTTGGACCTGGGTGGATCAATTAACCTCAGCTCAAATTGGCTCTGACACATGGCTGGTGAAGTTCTACAAGTGGGAACTGAATGAGAATGAGCGGCAATGCACGTTAACTACAGTGTTAATAAAGTCACAGGTTGAGGTACCAGATACTTTCACTTGGTTGCACATGCATCAGACATGGTTGGATGGTTTTGCAATTGCAAATGCAGAAAGATGGTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

427

Amino Acids

48.92

Weight (kDa)

5.83

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	10 - 262	5.8e-95	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	111 - 241	4.7e-13	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	286 - 414	7.4e-58	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1198
AccB1I	GGYRCC	1 cut(s)	1198
AccBSI	CCGCTC	1 cut(s)	1153
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	4 cut(s)	190, 371, 858, 1153
AclWI	GGATC	4 cut(s)	71, 75, 770, 1083
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	669
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	1200
AfiI	CCNNNNNNNGG	2 cut(s)	284, 985
AflII	CTTAAG	1 cut(s)	943
AgsI	TTSAA	3 cut(s)	106, 156, 571
AjiI	CACGTC	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	1067
AjuI	GAANNNNNNNTTGG	2 cut(s)	1045, 1077
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	6 cut(s)	402, 545, 586, 758, 997, 1091
AluI	AGCT	6 cut(s)	402, 545, 586, 758, 997, 1091
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	4 cut(s)	71, 75, 770, 1083
Ama87I	CYCGRG	1 cut(s)	985
ApeKI	GCWGC	2 cut(s)	586, 755
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	2 cut(s)	88, 848
Asp718I	GGTACC	1 cut(s)	1198
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	794, 1065
AsuHPI	GGTGA	5 cut(s)	159, 269, 275, 623, 1129
AvaI	CYCGRG	1 cut(s)	985
AvaII	GGWCC	2 cut(s)	794, 1065
AxyI	CCTNAGG	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	1198
BbvCI	CCTCAGC	1 cut(s)	1087
BbvI	GCAGC	2 cut(s)	573, 767
BccI	CCATC	5 cut(s)	278, 572, 987, 1238, 1266
BciT130I	CCWGG	1 cut(s)	1069
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	1170
BfrI	CTTAAG	1 cut(s)	943
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	3 cut(s)	587, 756, 1154
BlsI	GCNGC	3 cut(s)	588, 757, 1155
Bme1390I	CCNGG	1 cut(s)	1069
Bme18I	GGWCC	2 cut(s)	794, 1065
BmeT110I	CYCGRG	1 cut(s)	985
BmgBI	CACGTC	1 cut(s)	905
BmgT120I	GGNCC	2 cut(s)	794, 1065
BmiI	GGNNCC	1 cut(s)	1200
BmrFI	CCNGG	1 cut(s)	1069
BmsI	GCATC	3 cut(s)	616, 1009, 1237
Bpu10I	CCTNAGC	1 cut(s)	1087
Bsa29I	ATCGAT	1 cut(s)	950
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	775, 984, 1068
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 985
Bse1I	ACTGG	2 cut(s)	701, 1009
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	3 cut(s)	276, 1029, 1163
BseBI	CCWGG	1 cut(s)	1069
BseCI	ATCGAT	1 cut(s)	950
BseDI	CCNNGG	3 cut(s)	775, 984, 1068
BseGI	GGATG	3 cut(s)	517, 979, 1249
BseLI	CCNNNNNNNGG	2 cut(s)	284, 985
BseMI	GCAATG	3 cut(s)	276, 1029, 1163
BseMII	CTCAG	5 cut(s)	234, 380, 420, 735, 1101
BseNI	ACTGG	2 cut(s)	701, 1009
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	573, 767
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	2 cut(s)	774, 927
BshNI	GGYRCC	1 cut(s)	1198
BshVI	ATCGAT	1 cut(s)	950
BsiHKCI	CYCGRG	1 cut(s)	985
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	284, 985
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	985
Bsp143I	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
BspACI	CCGC	4 cut(s)	190, 371, 858, 1153
BspCNI	CTCAG	5 cut(s)	235, 379, 421, 736, 1100
BspDI	ATCGAT	1 cut(s)	950
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	1200
BspPI	GGATC	4 cut(s)	71, 75, 770, 1083
BspT107I	GGYRCC	1 cut(s)	1198
BspTI	CTTAAG	1 cut(s)	943
BsrBI	CCGCTC	1 cut(s)	1153
BsrDI	GCAATG	3 cut(s)	276, 1029, 1163
BsrI	ACTGG	2 cut(s)	701, 1009
BssECI	CCNNGG	3 cut(s)	775, 984, 1068
BssMI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	775
Bst2UI	CCWGG	1 cut(s)	1069
Bst4CI	ACNGT	3 cut(s)	257, 456, 1174
Bst6I	CTCTTC	3 cut(s)	99, 641, 648
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	943
BstAPI	GCANNNNNTGC	1 cut(s)	934
BstC8I	GCNNGC	4 cut(s)	532, 543, 584, 738
BstDEI	CTNAG	6 cut(s)	243, 345, 366, 429, 744, 1087
BstF5I	GGATG	3 cut(s)	517, 979, 1249
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	8 cut(s)	49, 70, 79, 167, 765, 950, 954, 1078
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
BstMWI	GCNNNNNNNGC	3 cut(s)	710, 726, 934
BstNI	CCWGG	1 cut(s)	1069
BstNSI	RCATGY	2 cut(s)	740, 1228
BstSCI	CCNGG	1 cut(s)	1067
BstSFI	CTRYAG	1 cut(s)	1170
BstV1I	GCAGC	2 cut(s)	573, 767
BstX2I	RGATCY	2 cut(s)	46, 762
BstYI	RGATCY	2 cut(s)	46, 762
Bsu15I	ATCGAT	1 cut(s)	950
Bsu36I	CCTNAGG	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	950
BtrI	CACGTC	1 cut(s)	905
BtsCI	GGATG	3 cut(s)	517, 979, 1249
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	4 cut(s)	502, 694, 1016, 1179
Cac8I	GCNNGC	4 cut(s)	532, 543, 584, 738
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	794, 1065
ClaI	ATCGAT	1 cut(s)	950
CseI	GACGC	2 cut(s)	220, 275
Csp6I	GTAC	1 cut(s)	1199
CviAII	CATG	9 cut(s)	34, 71, 134, 229, 664, 737, 1110, 1225, 1236
CviQI	GTAC	1 cut(s)	1199
DdeI	CTNAG	6 cut(s)	243, 345, 366, 429, 744, 1087
DpnI	GATC	8 cut(s)	48, 69, 78, 166, 764, 949, 953, 1077
DpnII	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
Eam1104I	CTCTTC	3 cut(s)	99, 641, 648
EarI	CTCTTC	3 cut(s)	99, 641, 648
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	2 cut(s)	794, 1065
Eco57I	CTGAAG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	1067
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	775
EcoT22I	ATGCAT	1 cut(s)	1230
ErhI	CCWWGG	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	9 cut(s)	37, 74, 137, 232, 667, 740, 1113, 1228, 1239
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	9 cut(s)	33, 70, 133, 228, 663, 736, 1109, 1224, 1235
FauI	CCCGC	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	587, 756, 1154
FokI	GGATG	3 cut(s)	524, 966, 1256
Fsp4HI	GCNGC	3 cut(s)	587, 756, 1154
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	587, 756, 1154
GsaI	CCCAGC	1 cut(s)	762
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	220, 275
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	9 cut(s)	37, 74, 137, 232, 667, 740, 1113, 1228, 1239
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	210, 1167
HindII	GTYRAC	2 cut(s)	210, 1167
HinfI	GANTC	3 cut(s)	5, 137, 614
HpaI	GTTAAC	1 cut(s)	1167
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	5 cut(s)	159, 269, 275, 623, 1129
Hpy166II	GTNNAC	4 cut(s)	210, 412, 844, 1167
Hpy188I	TCNGA	5 cut(s)	46, 451, 925, 1105, 1233
Hpy188III	TCNNGA	5 cut(s)	50, 71, 618, 647, 987
Hpy8I	GTNNAC	4 cut(s)	210, 412, 844, 1167
Hpy99I	CGWCG	1 cut(s)	906
HpyCH4III	ACNGT	3 cut(s)	257, 456, 1174
HpyCH4IV	ACGT	3 cut(s)	466, 904, 1163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	710, 726, 934
HpyF3I	CTNAG	6 cut(s)	243, 345, 366, 429, 744, 1087
HpySE526I	ACGT	3 cut(s)	466, 904, 1163
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	9 cut(s)	37, 74, 137, 232, 667, 740, 1113, 1228, 1239
HspAI	GCGC	1 cut(s)	110
KpnI	GGTACC	1 cut(s)	1202
KspAI	GTTAAC	1 cut(s)	1167
Kzo9I	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
LmnI	GCTCC	1 cut(s)	994
Lsp1109I	GCAGC	2 cut(s)	573, 767
LweI	GCATC	3 cut(s)	616, 1009, 1237
MaeII	ACGT	3 cut(s)	466, 904, 1163
MaeIII	GTNAC	5 cut(s)	263, 516, 611, 690, 1185
MalI	GATC	8 cut(s)	48, 69, 78, 166, 764, 949, 953, 1077
MbiI	CCGCTC	1 cut(s)	1153
MboI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
MboII	GAAGA	6 cut(s)	86, 89, 174, 628, 635, 695
MfeI	CAATTG	3 cut(s)	310, 600, 1254
MflI	RGATCY	2 cut(s)	46, 762
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	217, 1221
Mph1103I	ATGCAT	1 cut(s)	1230
MroXI	GAANNNNTTC	2 cut(s)	88, 848
MseI	TTAA	5 cut(s)	560, 944, 1082, 1166, 1178
MslI	CAYNNNNRTG	2 cut(s)	62, 699
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	943
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	1069
MunI	CAATTG	3 cut(s)	310, 600, 1254
MvaI	CCWGG	1 cut(s)	1069
MwoI	GCNNNNNNNGC	3 cut(s)	710, 726, 934
NdeII	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
NlaIII	CATG	9 cut(s)	37, 74, 137, 232, 667, 740, 1113, 1228, 1239
NlaIV	GGNNCC	1 cut(s)	1200
NmuCI	GTSAC	4 cut(s)	263, 611, 690, 1185
NsiI	ATGCAT	1 cut(s)	1230
NspI	RCATGY	2 cut(s)	740, 1228
OliI	CACNNNNGTG	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	740
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	88, 848
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	588, 757, 1155
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	1067
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	1067
PspN4I	GGNNCC	1 cut(s)	1200
PspPI	GGNCC	2 cut(s)	794, 1065
PsuI	RGATCY	2 cut(s)	46, 762
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	1200
RsaNI	GTAC	1 cut(s)	1199
RseI	CAYNNNNRTG	2 cut(s)	62, 699
SaqAI	TTAA	5 cut(s)	560, 944, 1082, 1166, 1178
SatI	GCNGC	3 cut(s)	587, 756, 1154
Sau3AI	GATC	8 cut(s)	46, 67, 76, 164, 762, 947, 951, 1075
Sau96I	GGNCC	2 cut(s)	794, 1065
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	1069
SfaNI	GCATC	3 cut(s)	616, 1009, 1237
SfcI	CTRYAG	1 cut(s)	1170
SinI	GGWCC	2 cut(s)	794, 1065
SmiMI	CAYNNNNRTG	2 cut(s)	62, 699
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
SphI	GCATGC	1 cut(s)	740
SsiI	CCGC	4 cut(s)	190, 371, 858, 1153
SspI	AATATT	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	1067
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	3 cut(s)	257, 456, 1174
TaiI	ACGT	3 cut(s)	469, 907, 1166
TaqI	TCGA	3 cut(s)	82, 333, 950
TauI	GCSGC	1 cut(s)	1156
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	5 cut(s)	560, 944, 1082, 1166, 1178
Tru9I	TTAA	5 cut(s)	560, 944, 1082, 1166, 1178
TscAI	CASTG	4 cut(s)	502, 701, 1016, 1179
TseFI	GTSAC	4 cut(s)	263, 611, 690, 1185
TseI	GCWGC	2 cut(s)	586, 755
Tsp45I	GTSAC	4 cut(s)	263, 611, 690, 1185
TspDTI	ATGAA	5 cut(s)	452, 776, 879, 947, 951
TspRI	CASTG	4 cut(s)	502, 701, 1016, 1179
Vha464I	CTTAAG	1 cut(s)	943
VpaK11BI	GGWCC	2 cut(s)	794, 1065
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	2 cut(s)	740, 1228
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	2 cut(s)	88, 848
Zsp2I	ATGCAT	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.