Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Forward (+)

28045725 .. 28051158

Gene Structure 5434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG134000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAGTCTCTTTCTCCCTCCGCAACAGTCACCATATCCAACAGCTACTCCTTCAGAGCTAACAAAACCCACTCCCAAACCCCTTGTACCAACCTCAGATTCCCCATCTCACAAACCCATCAAAACCCATCAACTTTTTGTCTCAGTTGTTGCAACAAGTGTTTTTCTATTAAAGCATGTGCAGCTTCAACATCAACAGCACCCTCAGCTTCAACTTCCCGCCACTGGATGGTGCTCATGGAGACTCCTCCACAAGGGGTCATTTCCAAACAACAAGTTATTGAATACTATGTTAAAACCCTTCAAAGAGTTTTGGGCAATGAGAAGGATGCTCAGATGTGTATATATGATGCTTCTTGGGATACCCATTTTGGCTTTTGCTGTGATGTTGATGAAGAAACTTCCCAGAAGCTTGCACGTTTACCGGGGGTTTTATCAGTTAAGCCTGACCCAGATTTTGGTTCTGTGAAAAAGGATTACAGTTTTTCAAATGTTCAAAGTGCAAGTACTCTGTTATTTCCACTTGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACCAGGGATTGGCATTGTTACAAAGGCGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCTTGGAAATCTAACTTTGGCTTCTGTTGTGAACTTGATGAAGAATCTGCAAGCAATCTAGCAAGTGTTCCTGGTGTTTTATCTGTTCAGCCAGACAAGAGTTATGACTCAGAAAATAAAGACTATGGAGGTAATGACATAAAGACTAAGGATGTGTCAATCTCTGCAGAGGCAAGTCAAACAACCCTCACAAGAACAAAGAAGCTTTTTGTGACTGGTATGTTGCGAGTCAATTCGTTTGTCAAACATTTAGGCTCCATAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

311

Amino Acids

34.3

Weight (kDa)

8.37

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	74 - 164	3.8e-41	Multiple organellar RNA editing factor 1, MORF domain
MORF_dom	PF21864	179 - 269	2.1e-39	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	229, 458, 540, 569
AciI	CCGC	2 cut(s)	21, 220
AcuI	CTGAAG	1 cut(s)	37
AfaI	GTAC	2 cut(s)	88, 508
AfiI	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
AgsI	TTSAA	6 cut(s)	189, 213, 284, 305, 489, 497
AjnI	CCWGG	2 cut(s)	562, 739
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	652
AluBI	AGCT	6 cut(s)	45, 59, 185, 209, 412, 874
AluI	AGCT	6 cut(s)	45, 59, 185, 209, 412, 874
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	3 cut(s)	12, 146, 236
ApeKI	GCWGC	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspLEI	GCGC	1 cut(s)	589
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	4 cut(s)	113, 126, 136, 223
BciT130I	CCWGG	2 cut(s)	564, 741
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	12, 146, 236
BfaI	CTAG	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	834
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	426, 564, 741
BmiI	GGNNCC	1 cut(s)	925
BmrFI	CCNGG	3 cut(s)	426, 564, 741
BmsI	GCATC	3 cut(s)	319, 340, 634
Bpu10I	CCTNAGC	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	425, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
Bse1I	ACTGG	3 cut(s)	230, 545, 889
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	564, 741
BseDI	CCNNGG	2 cut(s)	425, 563
BseGI	GGATG	3 cut(s)	234, 334, 826
BseLI	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	5 cut(s)	109, 157, 219, 347, 792
BseNI	ACTGG	3 cut(s)	230, 545, 889
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
BsmAI	GTCTC	3 cut(s)	12, 146, 236
Bsp119I	TTCGAA	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	237
BspACI	CCGC	2 cut(s)	21, 220
BspCNI	CTCAG	5 cut(s)	108, 156, 218, 346, 791
BspLI	GGNNCC	1 cut(s)	925
BspMAI	CTGCAG	1 cut(s)	838
BspT104I	TTCGAA	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	3 cut(s)	230, 545, 889
BssECI	CCNNGG	2 cut(s)	425, 563
Bst2UI	CCWGG	2 cut(s)	564, 741
Bst4CI	ACNGT	2 cut(s)	28, 482
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	414, 721
BstDEI	CTNAG	6 cut(s)	95, 143, 205, 333, 778, 816
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	234, 334, 826
BstHHI	GCGC	1 cut(s)	589
BstMAI	GTCTC	3 cut(s)	12, 146, 236
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 206
BstNI	CCWGG	2 cut(s)	564, 741
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	3 cut(s)	424, 562, 739
BstSFI	CTRYAG	1 cut(s)	834
BstV1I	GCAGC	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	234, 334, 826
BtsIMutI	CAGTG	2 cut(s)	223, 538
Cac8I	GCNNGC	2 cut(s)	414, 721
CfoI	GCGC	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	87, 507
CviAII	CATG	3 cut(s)	177, 238, 665
CviQI	GTAC	2 cut(s)	87, 507
DdeI	CTNAG	6 cut(s)	95, 143, 205, 333, 778, 816
Eco57I	CTGAAG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	562, 739
FaeI	CATG	3 cut(s)	180, 241, 668
FatI	CATG	3 cut(s)	176, 237, 664
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	3 cut(s)	241, 341, 833
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	1 cut(s)	183
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	3 cut(s)	180, 241, 668
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	2 cut(s)	410, 872
HinfI	GANTC	5 cut(s)	99, 244, 713, 776, 897
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	422, 701
Hpy188I	TCNGA	4 cut(s)	56, 98, 336, 781
Hpy8I	GTNNAC	2 cut(s)	422, 701
HpyAV	CCTTC	3 cut(s)	61, 311, 319
HpyCH4III	ACNGT	2 cut(s)	28, 482
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	7 cut(s)	153, 182, 416, 503, 647, 719, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 206
HpyF3I	CTNAG	6 cut(s)	95, 143, 205, 333, 778, 816
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	180, 241, 668
HspAI	GCGC	1 cut(s)	587
LmnI	GCTCC	1 cut(s)	929
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	3 cut(s)	319, 340, 634
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	3 cut(s)	28, 577, 880
MboII	GAAGA	2 cut(s)	407, 722
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	901
MlyI	GAGTC	3 cut(s)	238, 770, 906
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	28, 104, 214, 258, 791, 832, 866
MseI	TTAA	3 cut(s)	171, 294, 441
MslI	CAYNNNNRTG	1 cut(s)	652
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	3 cut(s)	426, 564, 741
MvaI	CCWGG	2 cut(s)	564, 741
MwoI	GCNNNNNNNGC	2 cut(s)	182, 206
NciI	CCSGG	1 cut(s)	426
NlaIII	CATG	3 cut(s)	180, 241, 668
NlaIV	GGNNCC	1 cut(s)	925
NmuCI	GTSAC	2 cut(s)	28, 880
NspI	RCATGY	1 cut(s)	180
NspV	TTCGAA	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	652
PfeI	GAWTC	2 cut(s)	99, 713
PflMI	CCANNNNNTGG	4 cut(s)	229, 458, 540, 569
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	3 cut(s)	238, 770, 905
PpsI	GAGTC	3 cut(s)	238, 770, 905
Psp6I	CCWGG	2 cut(s)	562, 739
PspGI	CCWGG	2 cut(s)	562, 739
PspN4I	GGNNCC	1 cut(s)	925
PstI	CTGCAG	1 cut(s)	838
RsaI	GTAC	2 cut(s)	88, 508
RsaNI	GTAC	2 cut(s)	87, 507
RseI	CAYNNNNRTG	1 cut(s)	652
SaqAI	TTAA	3 cut(s)	171, 294, 441
SatI	GCNGC	1 cut(s)	183
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	3 cut(s)	238, 770, 906
ScrFI	CCNGG	3 cut(s)	426, 564, 741
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	319, 340, 634
SfcI	CTRYAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	652
Sse9I	AATT	1 cut(s)	901
SsiI	CCGC	2 cut(s)	21, 220
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	3 cut(s)	424, 562, 739
TaaI	ACNGT	2 cut(s)	28, 482
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	550
TasI	AATT	1 cut(s)	901
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	2 cut(s)	99, 713
Tru1I	TTAA	3 cut(s)	171, 294, 441
Tru9I	TTAA	3 cut(s)	171, 294, 441
TscAI	CASTG	2 cut(s)	230, 545
TseFI	GTSAC	2 cut(s)	28, 880
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	2 cut(s)	28, 880
TspDTI	ATGAA	3 cut(s)	17, 408, 723
TspRI	CASTG	2 cut(s)	230, 545
Van91I	CCANNNNNTGG	4 cut(s)	229, 458, 540, 569
XagI	CCTNNNNNAGG	1 cut(s)	252
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	1 cut(s)	728
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.