Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Reverse (-)

23508640 .. 23513297

Gene Structure 4658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTGCAGCTTCAACATCAACAGCATCCTCAGCTTCAACTTCCCGCCACTGGATGGTGCTCATGGAGACTCCTCCACAAGGGTCATTTCCAAACAACAAGTTATTGAATACTATGTTGAAACCCTTCAAAGAGTTTTGGGCAATGAGAAGGATGCTCAGATGTGTATATATGATGCTTCTTGGGATACCCATTTTGGCTTTTGCTGTGATGTTGATGATGAAACTACCCGGAAGCTTGCACGTTTACCGGGGGTTTTATCAGTTAAGCCTGACCCAGATTTTGGTTCTGTGAAAAAGGATTACAGTTTTTCAAATGTTCAAAGTGCAAGTACTCTGTTATTTCCACTTGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACCGGGGATTGGCGTTGTTACAAAGGCGCAAATGGTTGATTATTACGCTCAAATACTAACAAAGGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCTTGGAAATCTAACTTTGGCTTCTGTTGTGAACTTGATGAAGAATCTGCAAGCAATCTAGCAAGTGTTCCTGGTGTTTTATCTGTTCAGCCAGACAAGAGTTATGACTCAGAAAATAAAGACTATGGAGGTAATGACATAAAGACTAAGGATGTGTCAATCTCTGCAGAGGCAAGTCAAACAACCCCCACAAGAACAAAGAAGCTTTTTGTGACTGGCTTATCATTTTATACATCTGAGAAAACCCTCCGAGAAGCATTTGAAGGCTTTGGTCAGCTTGTTGAAGTAAAAATAATAATGGACAAGATTTCTAAAAGGTCCAAAGGCTATGCATTCATAGAATACACTACAGAGGAAGCTGCTGCTGCTGCACTCAATGAGATGAATGGCAAGATCATTAATGGCTGGATGATAGTTGTTGATGTTGCCAAGACTAGCCCTCCAAGATATAGCAGGGGCCAAAGCAGATCAGCAGCAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

325

Amino Acids

36.1

Weight (kDa)

5.91

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	27 - 105	2e-32	Multiple organellar RNA editing factor 1, MORF domain
MORF_dom	PF21864	120 - 210	1.2e-39	Multiple organellar RNA editing factor 1, MORF domain
RRM_1	PF00076	233 - 299	2.3e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	53, 281, 363
AciI	CCGC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	6 cut(s)	49, 53, 78, 281, 363, 392
AgsI	TTSAA	9 cut(s)	13, 37, 107, 119, 128, 312, 320, 755, 776
AjnI	CCWGG	1 cut(s)	562
AleI	CACNNNNGTG	1 cut(s)	475
AluBI	AGCT	6 cut(s)	9, 33, 235, 697, 769, 851
AluI	AGCT	6 cut(s)	9, 33, 235, 697, 769, 851
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	949
ApeKI	GCWGC	6 cut(s)	6, 851, 854, 857, 860, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AseI	ATTAAT	1 cut(s)	891
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	810, 949
AsuC2I	CCSGG	3 cut(s)	229, 249, 387
AsuII	TTCGAA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	810
Bbv12I	GWGCWC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	5 cut(s)	18, 838, 841, 844, 847
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	564
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	3 cut(s)	229, 249, 387
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	551, 927
BfmI	CTRYAG	2 cut(s)	657, 840
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	6 cut(s)	7, 852, 855, 858, 861, 966
BlsI	GCNGC	6 cut(s)	8, 853, 856, 859, 862, 967
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	4 cut(s)	229, 249, 387, 564
Bme18I	GGWCC	1 cut(s)	810
BmgT120I	GGNCC	2 cut(s)	810, 949
BmiI	GGNNCC	1 cut(s)	950
BmrFI	CCNGG	4 cut(s)	229, 249, 387, 564
BmsI	GCATC	4 cut(s)	33, 142, 163, 457
Bpu10I	CCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	373
BpuMI	CCSGG	3 cut(s)	229, 249, 387
BsaJI	CCNNGG	2 cut(s)	248, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 53, 78, 281, 363, 392
Bse1I	ACTGG	3 cut(s)	54, 368, 712
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	248, 386
BseGI	GGATG	5 cut(s)	24, 58, 157, 649, 906
BseLI	CCNNNNNNNGG	6 cut(s)	49, 53, 78, 281, 363, 392
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	4 cut(s)	43, 170, 615, 720
BseNI	ACTGG	3 cut(s)	54, 368, 712
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	5 cut(s)	18, 838, 841, 844, 847
BsgI	GTGCAG	2 cut(s)	25, 846
BshFI	GGCC	1 cut(s)	951
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	229, 248, 386
BslI	CCNNNNNNNGG	6 cut(s)	49, 53, 78, 281, 363, 392
BsmAI	GTCTC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	1 cut(s)	951
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	885, 959
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	951
BspCNI	CTCAG	4 cut(s)	42, 169, 614, 721
BspLI	GGNNCC	1 cut(s)	950
BspMAI	CTGCAG	1 cut(s)	661
BspT104I	TTCGAA	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	54, 368, 712
BssECI	CCNNGG	2 cut(s)	248, 386
BssMI	GATC	2 cut(s)	885, 959
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	237, 544
BstDEI	CTNAG	5 cut(s)	29, 156, 601, 639, 729
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	5 cut(s)	24, 58, 157, 649, 906
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	2 cut(s)	888, 962
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	885, 959
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 857, 860
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	4 cut(s)	227, 247, 385, 562
BstSFI	CTRYAG	2 cut(s)	657, 840
BstV1I	GCAGC	5 cut(s)	18, 838, 841, 844, 847
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	951
BtsCI	GGATG	5 cut(s)	24, 58, 157, 649, 906
BtsIMutI	CAGTG	2 cut(s)	47, 361
Cac8I	GCNNGC	2 cut(s)	237, 544
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	810, 949
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	2 cut(s)	62, 488
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	5 cut(s)	29, 156, 601, 639, 729
DpnI	GATC	2 cut(s)	887, 961
DpnII	GATC	2 cut(s)	885, 959
Eco47I	GGWCC	1 cut(s)	810
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	826
FaeI	CATG	2 cut(s)	65, 491
FatI	CATG	2 cut(s)	61, 487
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	6 cut(s)	7, 852, 855, 858, 861, 966
FokI	GGATG	5 cut(s)	11, 65, 164, 656, 913
Fsp4HI	GCNGC	6 cut(s)	7, 852, 855, 858, 861, 966
FspBI	CTAG	2 cut(s)	551, 927
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	6 cut(s)	7, 852, 855, 858, 861, 966
HaeIII	GGCC	1 cut(s)	951
HapII	CCGG	3 cut(s)	229, 248, 386
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	2 cut(s)	65, 491
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HindIII	AAGCTT	2 cut(s)	233, 695
HinfI	GANTC	3 cut(s)	68, 536, 599
HpaII	CCGG	3 cut(s)	229, 248, 386
Hpy166II	GTNNAC	2 cut(s)	245, 524
Hpy188I	TCNGA	4 cut(s)	159, 604, 730, 743
Hpy8I	GTNNAC	2 cut(s)	245, 524
HpyAV	CCTTC	3 cut(s)	134, 142, 749
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	8 cut(s)	6, 239, 326, 470, 542, 659, 824, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 857, 860
HpyF3I	CTNAG	5 cut(s)	29, 156, 601, 639, 729
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	65, 491
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	2 cut(s)	885, 959
Lsp1109I	GCAGC	5 cut(s)	18, 838, 841, 844, 847
LweI	GCATC	4 cut(s)	33, 142, 163, 457
MaeI	CTAG	2 cut(s)	551, 927
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	2 cut(s)	400, 703
MalI	GATC	2 cut(s)	887, 961
MboI	GATC	2 cut(s)	885, 959
MboII	GAAGA	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	61
MlyI	GAGTC	2 cut(s)	62, 593
MnlI	CCTC	7 cut(s)	38, 82, 614, 655, 749, 838, 942
Mph1103I	ATGCAT	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	2 cut(s)	264, 891
MslI	CAYNNNNRTG	1 cut(s)	475
MspI	CCGG	3 cut(s)	229, 248, 386
MspR9I	CCNGG	4 cut(s)	229, 249, 387, 564
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	30, 857, 860
NciI	CCSGG	3 cut(s)	229, 249, 387
NdeII	GATC	2 cut(s)	885, 959
NlaIII	CATG	2 cut(s)	65, 491
NlaIV	GGNNCC	1 cut(s)	950
NmuCI	GTSAC	1 cut(s)	703
NsiI	ATGCAT	1 cut(s)	826
NspV	TTCGAA	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	475
PctI	GAATGC	1 cut(s)	824
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	3 cut(s)	53, 281, 363
PkrI	GCNGC	6 cut(s)	8, 853, 856, 859, 862, 967
PleI	GAGTC	2 cut(s)	62, 593
PpsI	GAGTC	2 cut(s)	62, 593
PshBI	ATTAAT	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	950
PspPI	GGNCC	2 cut(s)	810, 949
PstI	CTGCAG	1 cut(s)	661
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	264, 891
SatI	GCNGC	6 cut(s)	7, 852, 855, 858, 861, 966
Sau3AI	GATC	2 cut(s)	885, 959
Sau96I	GGNCC	2 cut(s)	810, 949
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	2 cut(s)	62, 593
ScrFI	CCNGG	4 cut(s)	229, 249, 387, 564
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	4 cut(s)	33, 142, 163, 457
SfcI	CTRYAG	2 cut(s)	657, 840
SfuI	TTCGAA	1 cut(s)	373
SinI	GGWCC	1 cut(s)	810
SmiMI	CAYNNNNRTG	1 cut(s)	475
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	551, 927
StyD4I	CCNGG	4 cut(s)	227, 247, 385, 562
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	373
TatI	WGTACW	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	264, 891
Tru9I	TTAA	2 cut(s)	264, 891
TscAI	CASTG	2 cut(s)	54, 368
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	6 cut(s)	6, 851, 854, 857, 860, 965
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	4 cut(s)	234, 546, 817, 890
TspRI	CASTG	2 cut(s)	54, 368
Van91I	CCANNNNNTGG	3 cut(s)	53, 281, 363
VpaK11BI	GGWCC	1 cut(s)	810
VspI	ATTAAT	1 cut(s)	891
XagI	CCTNNNNNAGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	2 cut(s)	551, 927
ZrmI	AGTACT	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.