Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Forward (+)

17118681 .. 17122933

Gene Structure 4253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTGCTCATGGAGACTCCTCCACAAGGGGTCATTTCCAAACAACAAGTTATTGAATACTATGTTAAAACCCTTCAAAGAGTTTTGGGCAGTGAGAAGGATGCTCAGATGTGTATATATGATGCTTCTTGGGATACCCATTTTGGCTTTTGCTGTGATGTTGATGATGAAACTTCCCAGAAGCTTGCACGTTTACCGGGGGTTTTATCGGTTAAGCCTGACCCAGATTTTGGTTCTGTGAAAAGGGATTACAGTTTTTCAAATGTTCAAAGTGCAAGTACTCTGTTATTTCCACTTGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACCGGGGATTGGCGTTGTTACCAAGGCGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCTTGGAAATCTAACTTTGGCTTCTGTTGTGAACTTGATGAAGAATCTGCAAGCAATCTAGCGAGTGTTCCTGGTGTTTTATCTGTTCAGCCAGACAAGAGTTATGACTCAGAAAATAAAGACTATGGAGGTAATGACATAAAGACTAAGAATGTGTCAATCTCTGCGGAGGCAAGTCAAACAACCCCCACAAGAACAAAGAAGCTTTTTGTGACTGGCTTATCATTTTATACATCTGAGAAAACCCTCCGAGAAGAATTTGAAGGCTTTGGTCAGCTTGTTGAAGTAAAAATAATAATGGACAAGATTTCTAAAAGGTCCAAAGGCTATGCATTCATAGAATACACTACAGAGGAAGCTGCTGCTGCTGCACTCAATGAGATGAATGGCAAGATCATTAATGGCTGGATGATAGTTGTTGATGTTGCCAAGACTAGCCCTCCAAGATATAGCAGGGGCCAAAGCAGATCAGCAGCAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

308

Amino Acids

34.29

Weight (kDa)

6.03

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	1 - 88	8.6e-37	Multiple organellar RNA editing factor 1, MORF domain
MORF_dom	PF21864	103 - 193	1.1e-39	Multiple organellar RNA editing factor 1, MORF domain
RRM_1	PF00076	216 - 282	4.9e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	230, 312
AciI	CCGC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	4 cut(s)	26, 230, 312, 341
AgsI	TTSAA	6 cut(s)	56, 77, 261, 269, 704, 725
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	424
AluBI	AGCT	4 cut(s)	184, 646, 718, 800
AluI	AGCT	4 cut(s)	184, 646, 718, 800
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	898
ApeKI	GCWGC	5 cut(s)	800, 803, 806, 809, 914
ApoI	RAATTY	1 cut(s)	698
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AseI	ATTAAT	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	759, 898
AsuC2I	CCSGG	2 cut(s)	198, 336
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	787, 790, 793, 796
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	2 cut(s)	198, 336
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	500, 876
BfmI	CTRYAG	1 cut(s)	789
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	5 cut(s)	801, 804, 807, 810, 915
BlsI	GCNGC	5 cut(s)	802, 805, 808, 811, 916
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	198, 336, 513
Bme18I	GGWCC	1 cut(s)	759
BmgT120I	GGNCC	2 cut(s)	759, 898
BmiI	GGNNCC	1 cut(s)	899
BmrFI	CCNGG	3 cut(s)	198, 336, 513
BmsI	GCATC	3 cut(s)	91, 112, 406
Bpu14I	TTCGAA	1 cut(s)	322
BpuMI	CCSGG	2 cut(s)	198, 336
BsaJI	CCNNGG	3 cut(s)	197, 335, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 230, 312, 341
Bse1I	ACTGG	2 cut(s)	317, 661
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	197, 335, 354
BseGI	GGATG	2 cut(s)	106, 855
BseLI	CCNNNNNNNGG	4 cut(s)	26, 230, 312, 341
BseMII	CTCAG	3 cut(s)	119, 564, 669
BseNI	ACTGG	2 cut(s)	317, 661
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	787, 790, 793, 796
BsgI	GTGCAG	1 cut(s)	795
BshFI	GGCC	1 cut(s)	900
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	197, 335
BslI	CCNNNNNNNGG	4 cut(s)	26, 230, 312, 341
BsmAI	GTCTC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	773
BsnI	GGCC	1 cut(s)	900
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	834, 908
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	1 cut(s)	900
BspCNI	CTCAG	3 cut(s)	118, 563, 670
BspLI	GGNNCC	1 cut(s)	899
BspT104I	TTCGAA	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	317, 661
BssECI	CCNNGG	3 cut(s)	197, 335, 354
BssMI	GATC	2 cut(s)	834, 908
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	186, 493
BstDEI	CTNAG	4 cut(s)	105, 550, 588, 678
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	106, 855
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	2 cut(s)	837, 911
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	834, 908
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 809
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	3 cut(s)	196, 334, 511
BstSFI	CTRYAG	1 cut(s)	789
BstV1I	GCAGC	4 cut(s)	787, 790, 793, 796
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	106, 855
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 310
Cac8I	GCNNGC	2 cut(s)	186, 493
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	759, 898
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	10, 437
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	4 cut(s)	105, 550, 588, 678
DpnI	GATC	2 cut(s)	836, 910
DpnII	GATC	2 cut(s)	834, 908
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	759
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	13, 440
FatI	CATG	2 cut(s)	9, 436
Fnu4HI	GCNGC	5 cut(s)	801, 804, 807, 810, 915
FokI	GGATG	2 cut(s)	113, 862
Fsp4HI	GCNGC	5 cut(s)	801, 804, 807, 810, 915
FspBI	CTAG	2 cut(s)	500, 876
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	5 cut(s)	801, 804, 807, 810, 915
HaeIII	GGCC	1 cut(s)	900
HapII	CCGG	2 cut(s)	197, 335
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	13, 440
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HindIII	AAGCTT	2 cut(s)	182, 644
HinfI	GANTC	3 cut(s)	16, 485, 548
HpaII	CCGG	2 cut(s)	197, 335
Hpy166II	GTNNAC	2 cut(s)	194, 473
Hpy188I	TCNGA	4 cut(s)	108, 553, 679, 692
Hpy8I	GTNNAC	2 cut(s)	194, 473
HpyAV	CCTTC	3 cut(s)	83, 91, 698
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	6 cut(s)	188, 275, 419, 491, 773, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 809
HpyF3I	CTNAG	4 cut(s)	105, 550, 588, 678
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	13, 440
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	834, 908
Lsp1109I	GCAGC	4 cut(s)	787, 790, 793, 796
LweI	GCATC	3 cut(s)	91, 112, 406
MaeI	CTAG	2 cut(s)	500, 876
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	2 cut(s)	349, 652
MalI	GATC	2 cut(s)	836, 910
MboI	GATC	2 cut(s)	834, 908
MboII	GAAGA	2 cut(s)	494, 707
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	698
MlyI	GAGTC	2 cut(s)	10, 542
MnlI	CCTC	6 cut(s)	30, 563, 604, 698, 787, 891
Mph1103I	ATGCAT	1 cut(s)	775
MseI	TTAA	3 cut(s)	66, 213, 840
MslI	CAYNNNNRTG	1 cut(s)	424
MspI	CCGG	2 cut(s)	197, 335
MspR9I	CCNGG	3 cut(s)	198, 336, 513
Mva1269I	GAATGC	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	2 cut(s)	806, 809
NciI	CCSGG	2 cut(s)	198, 336
NdeII	GATC	2 cut(s)	834, 908
NlaIII	CATG	2 cut(s)	13, 440
NlaIV	GGNNCC	1 cut(s)	899
NmuCI	GTSAC	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	424
PctI	GAATGC	1 cut(s)	773
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	2 cut(s)	230, 312
PkrI	GCNGC	5 cut(s)	802, 805, 808, 811, 916
PleI	GAGTC	2 cut(s)	10, 542
PpsI	GAGTC	2 cut(s)	10, 542
PshBI	ATTAAT	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	899
PspPI	GGNCC	2 cut(s)	759, 898
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	66, 213, 840
SatI	GCNGC	5 cut(s)	801, 804, 807, 810, 915
Sau3AI	GATC	2 cut(s)	834, 908
Sau96I	GGNCC	2 cut(s)	759, 898
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	2 cut(s)	10, 542
ScrFI	CCNGG	3 cut(s)	198, 336, 513
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	8 cut(s)	186, 193, 399, 574, 648, 720, 761, 802
SfaNI	GCATC	3 cut(s)	91, 112, 406
SfcI	CTRYAG	1 cut(s)	789
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	1 cut(s)	759
SmiMI	CAYNNNNRTG	1 cut(s)	424
Sse9I	AATT	1 cut(s)	698
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	2 cut(s)	500, 876
StyD4I	CCNGG	3 cut(s)	196, 334, 511
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	322
TasI	AATT	1 cut(s)	698
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	3 cut(s)	66, 213, 840
Tru9I	TTAA	3 cut(s)	66, 213, 840
TscAI	CASTG	2 cut(s)	97, 317
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	5 cut(s)	800, 803, 806, 809, 914
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	4 cut(s)	183, 495, 766, 839
TspRI	CASTG	2 cut(s)	97, 317
Van91I	CCANNNNNTGG	2 cut(s)	230, 312
VpaK11BI	GGWCC	1 cut(s)	759
VspI	ATTAAT	1 cut(s)	840
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XspI	CTAG	2 cut(s)	500, 876
ZrmI	AGTACT	1 cut(s)	280
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.