Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Forward (+)

7507240 .. 7509186

Gene Structure 1947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAAGGATTGGAATCTGTGTACGCTCAAGCTATGTATGGAATGACACGAGAGAGCAAAATCATGGAGCATCAAGGATCAGATTTGATTTGGGGAGGAAATGAGCTAATGGCTCGAGAACTCTGTTCTTCTTCTTCTTATCACCACCAACTCATTAATCCGAATCTTAGCAGCTGTTTCATGTCTGATCTTGGAGTCTTAGGTGAGATTCAACAGCAGCAACATGTTGGCAACAGAGCTAGCTCGATAGATCCATCATCACTCGATTGTTTGTTATCTGCGACGTCGAATAGCAACAACACCTCGACGGAGGACGATGAAGGAATATCTGTGCTTTTCTCAGATTGTCAGACTCTTTGGAGCTTTGGTGGAGTCTCATCTGCAGAGTCTGAGAACAGAGAGATCACTACTGAGACGACAACAACGATAAAGCCTAAGCCTTTGAAGAGAAACAGAGGAGGAGATGGAGGAACTACTGAGACTACAACAACAACAACAAAACCTAAGTCTTTGAAGAGAAACAGAGGAGACGAGACAGGAAGTCACTTTAGTCTTGTTCATCCTCAAGATGATTCGGAGAAAGGAGGTTTCAAGCTTATATACGATGAGAATCAATCGAAATCAAAGAAACCAAGAACAGAGAAAGAACGAGGCGGTTCTTCGAACATTAGTTTCCAACATTCAACTTGTTTGTCTGACAATGTCGAGCCCGATGCTGAGGCGATTGCACAAATGAAGGAGATGATATACAGAGCGGCTGCATTTAGACCGGTGAATTTCGGGTTAGAGATTGTGGAGAAGCCTAAGAGGAAGAACGTCAAGATATCGACGGATCCTCAAACGGTTGCAGCGAGACAGAGAAGGGAGAGGATAAGTGAGAAGATTAGGGTTTTACAAACATTGGTTCCAGGTGGGACGAAGATGGATACTGCATCAATGCTTGATGAAGCTGCTAATTATCTCAAGTTCCTTAGAGCACAAGTAAAAGCTTTAGAAAACTTGAGACCCAAGCTTGACCAAACCAATCTCTCTTTCTCTTCTGCTCCTACATCGTTTCCATTATTCCACCCATCTTTTCTTCCATTGCAAAATCCTAATCAAATCCATCATCCAGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

373

Amino Acids

41.32

Weight (kDa)

6.23

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	284 - 325	5.4e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	286 - 327	8.7e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	755
AciI	CCGC	2 cut(s)	654, 755
AclWI	GGATC	4 cut(s)	85, 245, 827, 840
AcsI	RAATTY	1 cut(s)	775
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	769
AgsI	TTSAA	5 cut(s)	212, 445, 514, 592, 684
AhdI	GACNNNNNGTC	1 cut(s)	540
AjnI	CCWGG	1 cut(s)	907
AjuI	GAANNNNNNNTTGG	2 cut(s)	1016, 1048
Alw21I	GWGCWC	1 cut(s)	979
Alw26I	GTCTC	7 cut(s)	379, 407, 473, 522, 527, 847, 997
AlwI	GGATC	4 cut(s)	85, 245, 827, 840
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	114
ApeKI	GCWGC	5 cut(s)	171, 217, 758, 848, 950
ApoI	RAATTY	1 cut(s)	775
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AseI	ATTAAT	1 cut(s)	156
AsiGI	ACCGGT	1 cut(s)	769
AsuHPI	GGTGA	3 cut(s)	134, 215, 784
AsuII	TTCGAA	1 cut(s)	662
AsuNHI	GCTAGC	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	832
BanII	GRGCYC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	979
BbvCI	CCTCAGC	1 cut(s)	717
BbvI	GCAGC	5 cut(s)	183, 229, 745, 860, 937
BccI	CCATC	5 cut(s)	262, 458, 916, 1078, 1113
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	1 cut(s)	909
BciVI	GTATCC	1 cut(s)	919
BcoDI	GTCTC	7 cut(s)	379, 407, 473, 522, 527, 847, 997
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	919
BisI	GCNGC	6 cut(s)	172, 218, 756, 759, 849, 951
BlsI	GCNGC	6 cut(s)	173, 219, 757, 760, 850, 952
Bme1390I	CCNGG	1 cut(s)	909
BmeRI	GACNNNNNGTC	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	834, 906
BmrFI	CCNGG	1 cut(s)	909
BmsI	GCATC	3 cut(s)	79, 703, 941
BmtI	GCTAGC	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	435, 717
Bpu14I	TTCGAA	1 cut(s)	662
BpuEI	CTTGAG	4 cut(s)	12, 549, 947, 1021
BsaBI	GATNNNNATC	2 cut(s)	13, 609
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	997
BsaWI	WCCGGW	1 cut(s)	769
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bse118I	RCCGGY	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	1082
Bse8I	GATNNNNATC	2 cut(s)	13, 609
BseBI	CCWGG	1 cut(s)	909
BseGI	GGATG	2 cut(s)	559, 1108
BseJI	GATNNNNATC	2 cut(s)	13, 609
BseMI	GCAATG	1 cut(s)	1082
BseMII	CTCAG	5 cut(s)	354, 381, 402, 468, 708
BseRI	GAGGAG	3 cut(s)	471, 474, 540
BseXI	GCAGC	5 cut(s)	183, 229, 745, 860, 937
BshTI	ACCGGT	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	979
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	770
BslFI	GGGAC	1 cut(s)	928
BsmAI	GTCTC	7 cut(s)	379, 407, 473, 522, 527, 847, 997
BsmBI	CGTCTC	2 cut(s)	407, 522
BsmFI	GGGAC	1 cut(s)	928
Bso31I	GGTCTC	1 cut(s)	997
BsoBI	CYCGRG	1 cut(s)	114
Bsp119I	TTCGAA	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	711, 979
Bsp143I	GATC	5 cut(s)	77, 187, 250, 402, 832
BspACI	CCGC	2 cut(s)	654, 755
BspCNI	CTCAG	5 cut(s)	353, 382, 403, 469, 709
BspLI	GGNNCC	2 cut(s)	834, 906
BspMAI	CTGCAG	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	4 cut(s)	85, 245, 827, 840
BspT104I	TTCGAA	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	997
BsrBI	CCGCTC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	1082
BsrFI	RCCGGY	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	769
BssMI	GATC	5 cut(s)	77, 187, 250, 402, 832
BssNI	GRCGYC	1 cut(s)	284
BssSI	CACGAG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	909
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	3 cut(s)	440, 509, 1042
BstACI	GRCGYC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	662
BstC8I	GCNNGC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	559, 1108
BstKTI	GATC	5 cut(s)	80, 190, 253, 405, 835
BstMAI	GTCTC	7 cut(s)	379, 407, 473, 522, 527, 847, 997
BstMBI	GATC	5 cut(s)	77, 187, 250, 402, 832
BstNI	CCWGG	1 cut(s)	909
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	907
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	5 cut(s)	183, 229, 745, 860, 937
BstX2I	RGATCY	2 cut(s)	250, 832
BstYI	RGATCY	2 cut(s)	250, 832
BsuI	GTATCC	1 cut(s)	919
BtsCI	GGATG	2 cut(s)	559, 1108
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	22
CspAI	ACCGGT	1 cut(s)	769
CviAII	CATG	3 cut(s)	64, 181, 224
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	5 cut(s)	79, 189, 252, 404, 834
DpnII	GATC	5 cut(s)	77, 187, 250, 402, 832
DriI	GACNNNNNGTC	1 cut(s)	540
Eam1104I	CTCTTC	3 cut(s)	440, 509, 1042
Eam1105I	GACNNNNNGTC	1 cut(s)	540
EarI	CTCTTC	3 cut(s)	440, 509, 1042
Eco24I	GRGCYC	1 cut(s)	711
Eco31I	GGTCTC	1 cut(s)	997
Eco32I	GATATC	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	907
EcoRV	GATATC	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	711
Esp3I	CGTCTC	2 cut(s)	407, 522
FaeI	CATG	3 cut(s)	67, 184, 227
FaiI	YATR	8 cut(s)	35, 39, 65, 182, 225, 599, 601, 748
FaqI	GGGAC	1 cut(s)	928
FatI	CATG	3 cut(s)	63, 180, 223
Fnu4HI	GCNGC	6 cut(s)	172, 218, 756, 759, 849, 951
FokI	GGATG	2 cut(s)	546, 1095
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	6 cut(s)	172, 218, 756, 759, 849, 951
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	6 cut(s)	172, 218, 756, 759, 849, 951
HapII	CCGG	1 cut(s)	770
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	67, 184, 227
HindIII	AAGCTT	3 cut(s)	593, 987, 1010
HinfI	GANTC	9 cut(s)	14, 163, 195, 208, 352, 372, 386, 572, 610
HpaII	CCGG	1 cut(s)	770
HphI	GGTGA	3 cut(s)	134, 215, 784
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	8 cut(s)	82, 162, 187, 343, 351, 391, 577, 697
Hpy188III	TCNNGA	4 cut(s)	116, 566, 820, 1112
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	4 cut(s)	286, 289, 310, 832
HpyAV	CCTTC	3 cut(s)	314, 730, 855
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4IV	ACGT	2 cut(s)	284, 816
HpyCH4V	TGCA	6 cut(s)	383, 728, 761, 848, 932, 1087
HpySE526I	ACGT	2 cut(s)	284, 816
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	67, 184, 227
Kzo9I	GATC	5 cut(s)	77, 187, 250, 402, 832
LmnI	GCTCC	3 cut(s)	67, 360, 1048
LpnPI	CCDG	4 cut(s)	522, 783, 894, 921
Lsp1109I	GCAGC	5 cut(s)	183, 229, 745, 860, 937
LweI	GCATC	3 cut(s)	79, 703, 941
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	284, 816
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	5 cut(s)	79, 189, 252, 404, 834
MbiI	CCGCTC	1 cut(s)	755
MboI	GATC	5 cut(s)	77, 187, 250, 402, 832
MflI	RGATCY	2 cut(s)	250, 832
MhlI	GDGCHC	2 cut(s)	711, 979
MluCI	AATT	2 cut(s)	775, 955
MlyI	GAGTC	4 cut(s)	204, 346, 381, 395
MmeI	TCCRAC	1 cut(s)	700
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	770
MspR9I	CCNGG	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	909
NdeII	GATC	5 cut(s)	77, 187, 250, 402, 832
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	67, 184, 227
NlaIV	GGNNCC	2 cut(s)	834, 906
NmuCI	GTSAC	1 cut(s)	542
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	662
PaeR7I	CTCGAG	1 cut(s)	114
PciI	ACATGT	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	2 cut(s)	422, 848
PfeI	GAWTC	5 cut(s)	14, 163, 208, 572, 610
PflFI	GACNNNGTC	1 cut(s)	701
PinAI	ACCGGT	1 cut(s)	769
PkrI	GCNGC	6 cut(s)	173, 219, 757, 760, 850, 952
PleI	GAGTC	4 cut(s)	203, 346, 380, 394
PpsI	GAGTC	4 cut(s)	203, 346, 380, 394
PscI	ACATGT	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	907
PspGI	CCWGG	1 cut(s)	907
PspN4I	GGNNCC	2 cut(s)	834, 906
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	250, 832
PsyI	GACNNNGTC	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	6 cut(s)	172, 218, 756, 759, 849, 951
Sau3AI	GATC	5 cut(s)	77, 187, 250, 402, 832
SchI	GAGTC	4 cut(s)	204, 346, 381, 395
ScrFI	CCNGG	1 cut(s)	909
SduI	GDGCHC	2 cut(s)	711, 979
SfaNI	GCATC	3 cut(s)	79, 703, 941
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	5 cut(s)	27, 114, 564, 962, 1000
SmoI	CTYRAG	5 cut(s)	27, 114, 564, 962, 1000
Sse9I	AATT	2 cut(s)	775, 955
SsiI	CCGC	2 cut(s)	654, 755
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	907
TaaI	ACNGT	1 cut(s)	844
TaiI	ACGT	2 cut(s)	287, 819
TaqI	TCGA	9 cut(s)	115, 245, 264, 287, 305, 617, 662, 705, 827
TasI	AATT	2 cut(s)	775, 955
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	5 cut(s)	14, 163, 208, 572, 610
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	5 cut(s)	171, 217, 758, 848, 950
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	169, 333, 548, 749, 960
TspGWI	ACGGA	2 cut(s)	323, 845
Tth111I	GACNNNGTC	1 cut(s)	701
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	1 cut(s)	775
XceI	RCATGY	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	114
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.