Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8433201.1

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 529

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8433201.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 529 bp

atcagatcagaagtccactgctctaagcacaaccaacatcaactttcaacagccaacttcatcatcactatcaggttcctccactgatcaagaacctgatccagaggtcattgcacagatgaaggagatgatttaccgcgccgcggctttcaggccagtcaatttgggcatagagatggtggagcggcccaagaggaagaatgtgaagatctcgtctgatccacagacggtggctgcaaggcaaaggagggagaggatcagtgagagaattagggttttgcagaagctggttcctggtggaagcaagatggacactgcttctatgctcgatgaggctgcaaactacctcaagttcctcaggtcacaagtcaaggctttagagaatttgggccaaaagatcgattccatgagtaattgtcttcctcctacaagctttgctttctctttcaatccttcctttcccatgcagacccaccatgtcccactccaccttaaccctaatcataatatccatcaacccccaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

175

Amino Acids

19.58

Weight (kDa)

9.56

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	185
AccII	CGCG	2 cut(s)	139, 144
AciI	CCGC	4 cut(s)	137, 142, 144, 185
AclWI	GGATC	3 cut(s)	93, 213, 264
AcsI	RAATTY	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	48, 449
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	287, 433
AluI	AGCT	2 cut(s)	287, 433
AlwI	GGATC	3 cut(s)	93, 213, 264
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	153, 186, 389
ApeKI	GCWGC	2 cut(s)	234, 336
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	187, 389
AxyI	CCTNAGG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	221, 323
BccI	CCATC	3 cut(s)	170, 302, 520
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	86
BfaI	CTAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	5 cut(s)	142, 145, 186, 235, 337
BlsI	GCNGC	5 cut(s)	143, 146, 187, 236, 338
Bme1390I	CCNGG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	187, 389
BmiI	GGNNCC	2 cut(s)	77, 292
BmrFI	CCNGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	221, 323
Bsh1236I	CGCG	2 cut(s)	139, 144
BshFI	GGCC	3 cut(s)	155, 188, 391
BshVI	ATCGAT	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	3 cut(s)	155, 188, 391
Bsp143I	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
BspACI	CCGC	4 cut(s)	137, 142, 144, 185
BspANI	GGCC	3 cut(s)	155, 188, 391
BspCNI	CTCAG	1 cut(s)	370
BspDI	ATCGAT	1 cut(s)	400
BspFNI	CGCG	2 cut(s)	139, 144
BspLI	GGNNCC	2 cut(s)	77, 292
BspPI	GGATC	3 cut(s)	93, 213, 264
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	24, 357
BstDSI	CCRYGG	1 cut(s)	142
BstFNI	CGCG	2 cut(s)	139, 144
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	7 cut(s)	8, 89, 101, 211, 221, 259, 400
BstMBI	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	2 cut(s)	139, 144
BstV1I	GCAGC	2 cut(s)	221, 323
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	155, 188, 391
BsuTUI	ATCGAT	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	142
BtsI	GCAGTG	2 cut(s)	16, 313
BtsIMutI	CAGTG	4 cut(s)	16, 82, 266, 313
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	187, 389
Cfr42I	CCGCGG	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	400
CviAII	CATG	3 cut(s)	407, 464, 477
DdeI	CTNAG	2 cut(s)	24, 357
DpnI	GATC	7 cut(s)	7, 88, 100, 210, 220, 258, 399
DpnII	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
Eco81I	CCTNAGG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	293
FaeI	CATG	3 cut(s)	410, 467, 480
FaiI	YATR	6 cut(s)	171, 324, 408, 465, 478, 505
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	3 cut(s)	406, 463, 476
FbaI	TGATCA	1 cut(s)	86
Fnu4HI	GCNGC	5 cut(s)	142, 145, 186, 235, 337
Fsp4HI	GCNGC	5 cut(s)	142, 145, 186, 235, 337
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	5 cut(s)	142, 145, 186, 235, 337
HaeIII	GGCC	3 cut(s)	155, 188, 391
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	410, 467, 480
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	1 cut(s)	402
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	5, 10, 218
Hpy188III	TCNNGA	2 cut(s)	90, 102
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	116, 463
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	5 cut(s)	114, 237, 281, 339, 467
HpyF3I	CTNAG	2 cut(s)	24, 357
Hsp92II	CATG	3 cut(s)	410, 467, 480
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	86
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	9 cut(s)	58, 109, 115, 137, 169, 273, 280, 307, 344
Lsp1109I	GCAGC	2 cut(s)	221, 323
MaeI	CTAG	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	7 cut(s)	7, 88, 100, 210, 220, 258, 399
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
MboII	GAAGA	3 cut(s)	209, 218, 411
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	4 cut(s)	161, 268, 383, 413
MnlI	CCTC	9 cut(s)	89, 98, 187, 241, 247, 326, 357, 366, 433
MseI	TTAA	1 cut(s)	493
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	2 cut(s)	139, 144
NdeII	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
NlaIII	CATG	3 cut(s)	410, 467, 480
NlaIV	GGNNCC	2 cut(s)	77, 292
NmuCI	GTSAC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	143, 146, 187, 236, 338
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	77, 292
PspPI	GGNCC	2 cut(s)	187, 389
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	174
SacII	CCGCGG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	493
SatI	GCNGC	5 cut(s)	142, 145, 186, 235, 337
Sau3AI	GATC	7 cut(s)	5, 86, 98, 208, 218, 256, 397
Sau96I	GGNCC	2 cut(s)	187, 389
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	8 cut(s)	77, 98, 109, 289, 349, 363, 435, 493
Sfr303I	CCGCGG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	4 cut(s)	161, 268, 383, 413
SsiI	CCGC	4 cut(s)	137, 142, 144, 185
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	2 cut(s)	328, 400
TasI	AATT	4 cut(s)	161, 268, 383, 413
TauI	GCSGC	3 cut(s)	144, 147, 188
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	493
Tru9I	TTAA	1 cut(s)	493
TscAI	CASTG	4 cut(s)	23, 89, 266, 320
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	234, 336
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	49, 135
TspRI	CASTG	4 cut(s)	23, 89, 266, 320
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.