Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Forward (+)

26747912 .. 26752472

Gene Structure 4561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGATAGTTTTGGTTGGGATAGCTCACACATTATAACAAACACATCCACCTTATGGAGCAACCATCATCAACATGATCTTGATCAAGAAAGCATATTGATGTCCAATAACTCGAGCTCCAGTGTTTTCAATATTCCAATCCAAGATCATCAACTCCAACAAGTCCAACAATCTCACATAATGATGAAGTCAAATGCCCAAAGTCCGCCGAGTAATGCTGAAATGGCTCAGCAACATTGGGGTGGTAAAAATTTGGCCGCTGAGCAATTGTGTCAGGCCCCTTTTATGATCAATAGGACTTATTCAATGAACTCACTGATCAGCAGTGCTTTCATGGCTGATGATCATCATGTCGAGACTCGGCCAACATCAACGGCAACATGTTCCATTGAGTCTCTGGATTGCTTGCTCTCTGCTACTAATAGCAACACTGCAGAAGACACTACATCTCTAAATCAAGATGATGCAATTAATTCTACGATTTTTCCAGATTGTCGAAGATCAAACTTATGGAACTTCGGAATAGGCAGTGCTACTACTGCAGTCTCATCCGGGGAGACTGAGACCGCTAACAACACCTCAAGACCAAATAGAGAAACTCAAAGTTTCAACAAGAGAAGCCGCAACAATGACCAAAGTGATCCCCTCAAGTTTTATGCAGAAAATTATAGTCAACACTTTGATCTTCTTCAAACAGATTCTTCAACTACTACTGCAGAAGGTGGTGGGTTTAGGCTCATCTCTGAAAACCCACCAAAGGCAAAGAAGCTCAAATCCTCATCAGATCAGAAGTCCACTGCTCCAAGCACAACCAACATCAACTTTCAACAGCCAACTTCATCATCACTATCAGGTTCCTCCACTGATCAAGAACCTGATCCAGAGGTCATTGCACAGATGAAGGAGATGATTTACCGCGCCGCGGCTTTCAGGCCAGTCAATTTGGGCATAGAGATGGTGGAGCGGCCCAAGAGGAAGAATGTGAAGATCTCGTCTGATCCACAGACGGTGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGGTTTTTGCAGAAGCTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCTATGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

370

Amino Acids

41.26

Weight (kDa)

5.89

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccBSI	CCGCTC	1 cut(s)	964
AccII	CGCG	2 cut(s)	918, 923
AciI	CCGC	8 cut(s)	206, 258, 567, 622, 916, 921, 923, 964
AclWI	GGATC	4 cut(s)	635, 872, 992, 1043
AcoI	YGGCCR	2 cut(s)	255, 362
AcsI	RAATTY	1 cut(s)	250
AfiI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	6 cut(s)	130, 306, 610, 692, 705, 827
AjnI	CCWGG	1 cut(s)	1073
AluBI	AGCT	4 cut(s)	24, 117, 769, 1067
AluI	AGCT	4 cut(s)	24, 117, 769, 1067
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	5 cut(s)	350, 399, 550, 551, 557
AlwI	GGATC	4 cut(s)	635, 872, 992, 1043
AlwNI	CAGNNNCTG	1 cut(s)	1067
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	5 cut(s)	255, 276, 362, 932, 965
ApeKI	GCWGC	1 cut(s)	1013
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	2 cut(s)	277, 966
AsuC2I	CCSGG	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	1000
BccI	CCATC	3 cut(s)	72, 949, 1082
BceAI	ACGGC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	1075
BclI	TGATCA	5 cut(s)	82, 288, 318, 343, 865
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BfmI	CTRYAG	3 cut(s)	432, 540, 714
BglII	AGATCT	1 cut(s)	987
BisI	GCNGC	6 cut(s)	258, 622, 921, 924, 965, 1014
BlpI	GCTNAGC	2 cut(s)	228, 261
BlsI	GCNGC	6 cut(s)	259, 623, 922, 925, 966, 1015
Bme1390I	CCNGG	2 cut(s)	553, 1075
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	277, 966
BmiI	GGNNCC	3 cut(s)	279, 856, 1072
BmrFI	CCNGG	2 cut(s)	553, 1075
BmsI	GCATC	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	103
Bpu1102I	GCTNAGC	2 cut(s)	228, 261
BpuEI	CTTGAG	2 cut(s)	565, 632
BpuMI	CCSGG	1 cut(s)	553
BsaBI	GATNNNNATC	2 cut(s)	81, 345
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	552, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 757, 922
Bse1I	ACTGG	2 cut(s)	120, 935
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	2 cut(s)	81, 345
BseBI	CCWGG	1 cut(s)	1075
BseDI	CCNNGG	2 cut(s)	552, 921
BseGI	GGATG	2 cut(s)	44, 548
BseJI	GATNNNNATC	2 cut(s)	81, 345
BseLI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	3 cut(s)	242, 252, 552
BseNI	ACTGG	2 cut(s)	120, 935
BseXI	GCAGC	1 cut(s)	1000
Bsh1236I	CGCG	2 cut(s)	918, 923
BshFI	GGCC	5 cut(s)	257, 278, 364, 934, 967
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	552
BslI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
BsmAI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BsnI	GGCC	5 cut(s)	257, 278, 364, 934, 967
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp1720I	GCTNAGC	2 cut(s)	228, 261
BspACI	CCGC	8 cut(s)	206, 258, 567, 622, 916, 921, 923, 964
BspANI	GGCC	5 cut(s)	257, 278, 364, 934, 967
BspCNI	CTCAG	3 cut(s)	241, 253, 553
BspFNI	CGCG	2 cut(s)	918, 923
BspLI	GGNNCC	3 cut(s)	279, 856, 1072
BspMAI	CTGCAG	3 cut(s)	436, 544, 718
BspPI	GGATC	4 cut(s)	635, 872, 992, 1043
BspTNI	GGTCTC	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	964
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	2 cut(s)	120, 935
BssECI	CCNNGG	2 cut(s)	552, 921
Bst2UI	CCWGG	1 cut(s)	1075
Bst4CI	ACNGT	1 cut(s)	1009
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	3 cut(s)	228, 261, 561
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	2 cut(s)	44, 548
BstFNI	CGCG	2 cut(s)	918, 923
BstHHI	GCGC	1 cut(s)	920
BstMAI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 335, 539
BstNI	CCWGG	1 cut(s)	1075
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	551, 1073
BstSFI	CTRYAG	3 cut(s)	432, 540, 714
BstUI	CGCG	2 cut(s)	918, 923
BstV1I	GCAGC	1 cut(s)	1000
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	987
BstYI	RGATCY	1 cut(s)	987
BsuRI	GGCC	5 cut(s)	257, 278, 364, 934, 967
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	44, 548
BtsI	GCAGTG	5 cut(s)	331, 429, 535, 795, 1093
BtsIMutI	CAGTG	9 cut(s)	127, 314, 331, 429, 535, 795, 861, 1045, 1093
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	2 cut(s)	277, 966
Cfr42I	CCGCGG	1 cut(s)	924
CviAII	CATG	4 cut(s)	74, 334, 350, 381
DdeI	CTNAG	3 cut(s)	228, 261, 561
EaeI	YGGCCR	2 cut(s)	255, 362
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	557
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	1073
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	4 cut(s)	77, 337, 353, 384
FatI	CATG	4 cut(s)	73, 333, 349, 380
FbaI	TGATCA	5 cut(s)	82, 288, 318, 343, 865
Fnu4HI	GCNGC	6 cut(s)	258, 622, 921, 924, 965, 1014
FokI	GGATG	2 cut(s)	31, 535
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	6 cut(s)	258, 622, 921, 924, 965, 1014
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	6 cut(s)	258, 622, 921, 924, 965, 1014
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	5 cut(s)	257, 278, 364, 934, 967
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	4 cut(s)	77, 337, 353, 384
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HinfI	GANTC	3 cut(s)	358, 392, 698
HpaII	CCGG	1 cut(s)	552
Hpy166II	GTNNAC	2 cut(s)	674, 795
Hpy188I	TCNGA	5 cut(s)	521, 745, 784, 789, 997
Hpy188III	TCNNGA	9 cut(s)	80, 86, 355, 398, 458, 488, 582, 869, 881
Hpy8I	GTNNAC	2 cut(s)	674, 795
HpyAV	CCTTC	2 cut(s)	713, 895
HpyCH4III	ACNGT	1 cut(s)	1009
HpyCH4V	TGCA	8 cut(s)	434, 467, 542, 659, 716, 893, 1016, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 335, 539
HpyF3I	CTNAG	3 cut(s)	228, 261, 561
Hsp92II	CATG	4 cut(s)	77, 337, 353, 384
HspAI	GCGC	1 cut(s)	918
Ksp22I	TGATCA	5 cut(s)	82, 288, 318, 343, 865
KspI	CCGCGG	1 cut(s)	924
LmnI	GCTCC	4 cut(s)	57, 122, 805, 961
Lsp1109I	GCAGC	1 cut(s)	1000
LweI	GCATC	1 cut(s)	454
MbiI	CCGCTC	1 cut(s)	964
MboII	GAAGA	7 cut(s)	449, 510, 677, 680, 693, 988, 997
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	987
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	7 cut(s)	250, 266, 468, 472, 664, 940, 1047
MlyI	GAGTC	2 cut(s)	352, 401
MmeI	TCCRAC	2 cut(s)	181, 190
MnlI	CCTC	8 cut(s)	589, 656, 787, 868, 877, 966, 1020, 1026
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	5 cut(s)	72, 98, 182, 240, 953
MspA1I	CMGCKG	2 cut(s)	260, 923
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	553, 1075
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	1075
MvnI	CGCG	2 cut(s)	918, 923
MwoI	GCNNNNNNNGC	3 cut(s)	224, 335, 539
NciI	CCSGG	1 cut(s)	553
NlaIII	CATG	4 cut(s)	77, 337, 353, 384
NlaIV	GGNNCC	3 cut(s)	279, 856, 1072
NmeAIII	GCCGAG	2 cut(s)	234, 340
NspI	RCATGY	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	698
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	6 cut(s)	259, 623, 922, 925, 966, 1015
PleI	GAGTC	2 cut(s)	352, 400
PpsI	GAGTC	2 cut(s)	352, 400
PscI	ACATGT	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	1073
PspGI	CCWGG	1 cut(s)	1073
PspN4I	GGNNCC	3 cut(s)	279, 856, 1072
PspPI	GGNCC	2 cut(s)	277, 966
PspXI	VCTCGAGB	1 cut(s)	112
PstI	CTGCAG	3 cut(s)	436, 544, 718
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	987
RseI	CAYNNNNRTG	5 cut(s)	72, 98, 182, 240, 953
SacI	GAGCTC	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	924
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	6 cut(s)	258, 622, 921, 924, 965, 1014
Sau96I	GGNCC	2 cut(s)	277, 966
SchI	GAGTC	2 cut(s)	352, 401
ScrFI	CCNGG	2 cut(s)	553, 1075
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	3 cut(s)	432, 540, 714
Sfr274I	CTCGAG	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	924
SgrBI	CCGCGG	1 cut(s)	924
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	5 cut(s)	72, 98, 182, 240, 953
SmlI	CTYRAG	3 cut(s)	112, 580, 647
SmoI	CTYRAG	3 cut(s)	112, 580, 647
Sse9I	AATT	7 cut(s)	250, 266, 468, 472, 664, 940, 1047
SsiI	CCGC	8 cut(s)	206, 258, 567, 622, 916, 921, 923, 964
SspI	AATATT	1 cut(s)	133
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	551, 1073
TaaI	ACNGT	1 cut(s)	1009
TaqI	TCGA	4 cut(s)	113, 354, 496, 1108
TasI	AATT	7 cut(s)	250, 266, 468, 472, 664, 940, 1047
TauI	GCSGC	5 cut(s)	260, 624, 923, 926, 967
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	9 cut(s)	127, 321, 331, 436, 535, 802, 868, 1045, 1100
TseI	GCWGC	1 cut(s)	1013
TspDTI	ATGAA	5 cut(s)	200, 322, 323, 828, 914
TspRI	CASTG	9 cut(s)	127, 321, 331, 436, 535, 802, 868, 1045, 1100
Van91I	CCANNNNNTGG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.