Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Forward (+)

20542679 .. 20544025

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1179100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGACGGTTTGGATTGGGACGACGGCTCACACATCACAAACACATCAACCTTATTATGGAGCAATCAAGTACATAACCTTGAAGAATTGTTGGTGTCTAACTCAAGTTTCAGTGCCTTGATTCCAATCCAAGGGCTTCCGAAGGTGCAAACATCGCATGCGATTATGAATTCAAATACCAAAAAACCGAGCAGTATTGGCTCTCATCAAATTGCTAATCAGAAAAATCCGTGTGGTTTGGAATCAGTGCATGTTATGCCAACTTTGAGAGCTGGTGAATCGTGTCAAACCCCTTTGAAGGTCAACAGGACTTATAATTTGATGAGTTCACTGAGCACTGGTACTTTCATGGCTGCTGATCTTTATGGCAATCTTGAGAAATATGTACAACTGCAAGCCAATGTTCAAGGCTTACAAGATCATCATGTCAAGGCTAAGCCAGCAACGATGCACTCCGTTGATTCCTTGGATTGCTTGCTCTCAGCCACTAATAGCAACACCGACACATCTGTAGAAGATGACGATGGAATTTCTATGCTTTTTTCGGACTGTAGAAGTAACTTATGGAACTTTGGAGCAGGAAATAATAGCGCAATCTCGTCCGGAGGGTCTGAGAACACTGAAACAGTAGTCTCTCAAAGTTCATCAGATTTATATGTCCAAAGCCAAGGTAAGCTAAATTCCACAAAGAGAAGCCATGATCAAAGTGAGCCCAAATTGCACGGAGCAAATTATAGTCACTTAGGTCTTCTTCAAACAGATTATTCTTCTACTAGTGAGGGGGGTTTCAGGCTCATCTCCGACAACCCACCAAAAACGAAGAAACCTAGATCAGATAATAAGCGTCCAAGCTCATCCAACATCAGCTTTCAACAACCAACTTCATCCGTGTCAACTTCCTCTATTGAAGAACCCGATCCAGAGGTCATTGCGCAGATGAAAGAGATGATTTATCGCGCTGCGGCTTTCAGGCCTGTGAACTTGGGGCTGGAGCTGGTGGAGAGGCCAAAGAGGAAGAATGTGAAAATATCATCTGATCCACAAACTGTGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGATTTTGCAAAGGATGGTTCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTCTTGAGGGCACAGGTCAAGGCACTTGAAAACTTAGGCCAAAAAATTGAGTCCATGAGTAATTCTAATATTCCTACTACAAGCTTTGCTTTCTCTTTCAACCCCTCTTTTCCCATGCAAACCCATAATCATGTTCCACTCCAAAACCCTAATCATATCCACCAACCCCACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

449

Amino Acids

49.21

Weight (kDa)

6.98

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	352 - 393	5.7e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	354 - 396	1.7e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
Acc16I	TGCGCA	1 cut(s)	933
AccII	CGCG	1 cut(s)	957
AccIII	TCCGGA	1 cut(s)	602
AciI	CCGC	1 cut(s)	962
AclWI	GGATC	3 cut(s)	911, 1031, 1082
AcsI	RAATTY	3 cut(s)	169, 528, 679
AfaI	GTAC	3 cut(s)	72, 343, 387
AfiI	CCNNNNNNNGG	3 cut(s)	57, 131, 298
AgsI	TTSAA	9 cut(s)	83, 174, 298, 407, 755, 872, 908, 1199, 1270
AhlI	ACTAGT	1 cut(s)	773
AjnI	CCWGG	1 cut(s)	1111
AluBI	AGCT	6 cut(s)	272, 676, 852, 867, 994, 1254
AluI	AGCT	6 cut(s)	272, 676, 852, 867, 994, 1254
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	3 cut(s)	911, 1031, 1082
Aor13HI	TCCGGA	1 cut(s)	602
AoxI	GGCC	3 cut(s)	971, 1004, 1207
ApeKI	GCWGC	4 cut(s)	353, 959, 1052, 1154
ApoI	RAATTY	3 cut(s)	169, 528, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspLEI	GCGC	3 cut(s)	593, 934, 959
AsuHPI	GGTGA	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	1183
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	340, 946, 1039, 1141
BccI	CCATC	3 cut(s)	518, 1099, 1120
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	1113
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	637
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	2 cut(s)	774, 828
BfmI	CTRYAG	2 cut(s)	510, 550
BisI	GCNGC	5 cut(s)	354, 960, 963, 1053, 1155
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	5 cut(s)	355, 961, 964, 1054, 1156
Bme1390I	CCNGG	1 cut(s)	1113
BmiI	GGNNCC	1 cut(s)	1110
BmrFI	CCNGG	1 cut(s)	1113
BmsI	GCATC	2 cut(s)	438, 1145
BpiI	GAAGAC	1 cut(s)	740
BpmI	CTGGAG	1 cut(s)	1010
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	4 cut(s)	88, 395, 1151, 1195
BsaBI	GATNNNNATC	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	130, 465, 667, 1339
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 131, 298
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	1113
BseDI	CCNNGG	4 cut(s)	130, 465, 667, 1339
BseGI	GGATG	3 cut(s)	854, 884, 1110
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	57, 131, 298
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	3 cut(s)	323, 495, 603
BseNI	ACTGG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	1183
BseXI	GCAGC	4 cut(s)	340, 946, 1039, 1141
Bsh1236I	CGCG	1 cut(s)	957
BshFI	GGCC	3 cut(s)	973, 1006, 1209
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	57, 131, 298
BsmAI	GTCTC	1 cut(s)	637
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	973, 1006, 1209
Bsp1286I	GDGCHC	3 cut(s)	338, 714, 1183
Bsp13I	TCCGGA	1 cut(s)	602
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	1 cut(s)	962
BspANI	GGCC	3 cut(s)	973, 1006, 1209
BspCNI	CTCAG	3 cut(s)	324, 494, 604
BspEI	TCCGGA	1 cut(s)	602
BspFNI	CGCG	1 cut(s)	957
BspLI	GGNNCC	1 cut(s)	1110
BspPI	GGATC	3 cut(s)	911, 1031, 1082
BsrDI	GCAATG	1 cut(s)	927
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	4 cut(s)	130, 465, 667, 1339
BssMI	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
BssT1I	CCWWGG	3 cut(s)	130, 465, 667
Bst2UI	CCWGG	1 cut(s)	1113
Bst4CI	ACNGT	5 cut(s)	8, 551, 628, 1048, 1343
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	159, 396, 441, 476
BstDEI	CTNAG	6 cut(s)	332, 435, 481, 612, 742, 1204
BstDSI	CCRYGG	1 cut(s)	1339
BstF5I	GGATG	3 cut(s)	854, 884, 1110
BstFNI	CGCG	1 cut(s)	957
BstHHI	GCGC	3 cut(s)	593, 934, 959
BstKTI	GATC	7 cut(s)	361, 421, 703, 833, 919, 1039, 1077
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
BstMWI	GCNNNNNNNGC	5 cut(s)	154, 198, 256, 440, 718
BstNI	CCWGG	1 cut(s)	1113
BstNSI	RCATGY	2 cut(s)	161, 254
BstSCI	CCNGG	1 cut(s)	1111
BstSFI	CTRYAG	2 cut(s)	510, 550
BstSLI	GKGCMC	1 cut(s)	1183
BstUI	CGCG	1 cut(s)	957
BstV1I	GCAGC	4 cut(s)	340, 946, 1039, 1141
BstV2I	GAAGAC	1 cut(s)	740
BsuRI	GGCC	3 cut(s)	973, 1006, 1209
BtgI	CCRYGG	1 cut(s)	1339
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	854, 884, 1110
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	7 cut(s)	118, 252, 329, 336, 618, 1084, 1131
Cac8I	GCNNGC	4 cut(s)	159, 396, 441, 476
CfoI	GCGC	3 cut(s)	593, 934, 959
CseI	GACGC	1 cut(s)	833
Csp6I	GTAC	3 cut(s)	71, 342, 386
CviAII	CATG	8 cut(s)	158, 251, 349, 425, 698, 1225, 1285, 1301
CviQI	GTAC	3 cut(s)	71, 342, 386
DdeI	CTNAG	6 cut(s)	332, 435, 481, 612, 742, 1204
DpnI	GATC	7 cut(s)	360, 420, 702, 832, 918, 1038, 1076
DpnII	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
Eco130I	CCWWGG	3 cut(s)	130, 465, 667
Eco147I	AGGCCT	1 cut(s)	973
Eco24I	GRGCYC	1 cut(s)	714
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	1111
EcoT14I	CCWWGG	3 cut(s)	130, 465, 667
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	3 cut(s)	130, 465, 667
FaeI	CATG	8 cut(s)	161, 254, 352, 428, 701, 1228, 1288, 1304
FalI	AAGNNNNNCTT	2 cut(s)	1243, 1275
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	8 cut(s)	157, 250, 348, 424, 697, 1224, 1284, 1300
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	5 cut(s)	354, 960, 963, 1053, 1155
FokI	GGATG	3 cut(s)	841, 871, 1117
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	5 cut(s)	354, 960, 963, 1053, 1155
FspBI	CTAG	2 cut(s)	774, 828
FspI	TGCGCA	1 cut(s)	933
GlaI	GCGC	3 cut(s)	592, 933, 958
GluI	GCNGC	5 cut(s)	354, 960, 963, 1053, 1155
GsuI	CTGGAG	1 cut(s)	1010
HaeIII	GGCC	3 cut(s)	973, 1006, 1209
HapII	CCGG	1 cut(s)	603
HgaI	GACGC	1 cut(s)	833
HhaI	GCGC	3 cut(s)	593, 934, 959
Hin1II	CATG	8 cut(s)	161, 254, 352, 428, 701, 1228, 1288, 1304
Hin6I	GCGC	3 cut(s)	591, 932, 957
HinP1I	GCGC	3 cut(s)	591, 932, 957
HincII	GTYRAC	2 cut(s)	304, 894
HindII	GTYRAC	2 cut(s)	304, 894
HindIII	AAGCTT	1 cut(s)	1252
HinfI	GANTC	5 cut(s)	121, 242, 278, 461, 1220
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	4 cut(s)	304, 329, 894, 979
Hpy188I	TCNGA	8 cut(s)	141, 222, 547, 613, 649, 802, 835, 1036
Hpy188III	TCNNGA	4 cut(s)	374, 603, 920, 1174
Hpy8I	GTNNAC	4 cut(s)	304, 329, 894, 979
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	136, 292
HpyCH4III	ACNGT	5 cut(s)	8, 551, 628, 1048, 1343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	154, 198, 256, 440, 718
HpyF3I	CTNAG	6 cut(s)	332, 435, 481, 612, 742, 1204
Hsp92II	CATG	8 cut(s)	161, 254, 352, 428, 701, 1228, 1288, 1304
HspAI	GCGC	3 cut(s)	591, 932, 957
Kpn2I	TCCGGA	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
LmnI	GCTCC	4 cut(s)	60, 575, 725, 991
Lsp1109I	GCAGC	4 cut(s)	340, 946, 1039, 1141
LweI	GCATC	2 cut(s)	438, 1145
MaeI	CTAG	2 cut(s)	774, 828
MaeIII	GTNAC	2 cut(s)	557, 737
MalI	GATC	7 cut(s)	360, 420, 702, 832, 918, 1038, 1076
MboI	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
MboII	GAAGA	8 cut(s)	95, 527, 740, 743, 759, 832, 920, 1027
MhlI	GDGCHC	3 cut(s)	338, 714, 1183
MlyI	GAGTC	1 cut(s)	1229
MmeI	TCCRAC	2 cut(s)	825, 882
MroI	TCCGGA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	1299
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	1 cut(s)	1113
MvaI	CCWGG	1 cut(s)	1113
MvnI	CGCG	1 cut(s)	957
MwoI	GCNNNNNNNGC	5 cut(s)	154, 198, 256, 440, 718
NdeII	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
NlaIII	CATG	8 cut(s)	161, 254, 352, 428, 701, 1228, 1288, 1304
NlaIV	GGNNCC	1 cut(s)	1110
NmuCI	GTSAC	1 cut(s)	737
NsbI	TGCGCA	1 cut(s)	933
NspI	RCATGY	2 cut(s)	161, 254
PaeI	GCATGC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	973
PfeI	GAWTC	4 cut(s)	121, 242, 278, 461
PkrI	GCNGC	5 cut(s)	355, 961, 964, 1054, 1156
PleI	GAGTC	1 cut(s)	1228
PpsI	GAGTC	1 cut(s)	1228
PsiI	TTATAA	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	1111
PspGI	CCWGG	1 cut(s)	1111
PspN4I	GGNNCC	1 cut(s)	1110
RsaI	GTAC	3 cut(s)	72, 343, 387
RsaNI	GTAC	3 cut(s)	71, 342, 386
RseI	CAYNNNNRTG	1 cut(s)	1299
SatI	GCNGC	5 cut(s)	354, 960, 963, 1053, 1155
Sau3AI	GATC	7 cut(s)	358, 418, 700, 830, 916, 1036, 1074
SchI	GAGTC	1 cut(s)	1229
ScrFI	CCNGG	1 cut(s)	1113
SduI	GDGCHC	3 cut(s)	338, 714, 1183
SfaNI	GCATC	2 cut(s)	438, 1145
SfcI	CTRYAG	2 cut(s)	510, 550
SmiMI	CAYNNNNRTG	1 cut(s)	1299
SmlI	CTYRAG	4 cut(s)	103, 374, 1166, 1174
SmoI	CTYRAG	4 cut(s)	103, 374, 1166, 1174
SpeI	ACTAGT	1 cut(s)	773
SphI	GCATGC	1 cut(s)	161
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	1 cut(s)	962
SspI	AATATT	1 cut(s)	1240
SspMI	CTAG	2 cut(s)	774, 828
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	1 cut(s)	1111
StyI	CCWWGG	3 cut(s)	130, 465, 667
TaaI	ACNGT	5 cut(s)	8, 551, 628, 1048, 1343
TatI	WGTACW	2 cut(s)	70, 385
TauI	GCSGC	1 cut(s)	965
TfiI	GAWTC	4 cut(s)	121, 242, 278, 461
TscAI	CASTG	7 cut(s)	118, 252, 336, 343, 625, 1084, 1138
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	4 cut(s)	353, 959, 1052, 1154
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	5 cut(s)	182, 337, 633, 873, 953
TspGWI	ACGGA	4 cut(s)	219, 445, 738, 877
TspRI	CASTG	7 cut(s)	118, 252, 336, 343, 625, 1084, 1138
XapI	RAATTY	3 cut(s)	169, 528, 679
XceI	RCATGY	2 cut(s)	161, 254
XspI	CTAG	2 cut(s)	774, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.