Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Reverse (-)

47091794 .. 47093090

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0369000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAGTTTTCAAGCCTGGGTTGGAAATATGTTCAACTAAGGAGCTTTCGAGATTCGATGGTGCAAGCACTAGTGAGCAAACAATGAACAAGAATAGGATAAAAACTGAAAGAGCATCGTATCAGGGCAACTTAGAGATTGAGTCAAGGACCAAGGGTGCTGAAACAGCTATGAAAAGATCGCTGATACTTGGTTGTTCAAGTAGCAAGGCGAAACTTTCTTGTAAGGGTAAAGCTGTACTGTGCTCCTCTAGTGAAATTGAAGAACTAAACGAGAGAATGAGGATTCTTGAAGAAGAAACTGAAAGTATGAAGCAAGAATTATTTGAGGGTGCAGAAGAAAGAAGGAAGTTGATAAATGAGATATATCAGCAGTTTCAGATTCTAACAAGAGAACTCAAGTTCAATGATGGAAGTAGAAGTGAGACTTCTTCACAGGACGAGAAAATAGGATCAGATTTATCGGATGATTTACAACAAGATCTAGCTCATACTTTGTCACTGCTGATGTTAACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

173

Amino Acids

19.6

Weight (kDa)

5.09

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	460
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	6 cut(s)	13, 36, 201, 263, 293, 406
AhlI	ACTAGT	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	4 cut(s)	46, 170, 236, 488
AluI	AGCT	4 cut(s)	46, 170, 236, 488
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	248
BccI	CCATC	2 cut(s)	53, 404
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	419
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	3 cut(s)	72, 252, 485
BglII	AGATCT	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	17, 153
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	17, 153
BseGI	GGATG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	179, 452, 481
BspPI	GGATC	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	17, 153
BssMI	GATC	3 cut(s)	179, 452, 481
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	39, 133
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	3 cut(s)	182, 455, 484
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	3 cut(s)	179, 452, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	239
CviJI	RGCY	5 cut(s)	16, 46, 170, 236, 488
CviKI_1	RGCY	5 cut(s)	16, 46, 170, 236, 488
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	39, 133
DpnI	GATC	3 cut(s)	181, 454, 483
DpnII	GATC	3 cut(s)	179, 452, 481
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	5 cut(s)	31, 173, 311, 367, 492
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FokI	GGATG	1 cut(s)	479
FspBI	CTAG	3 cut(s)	72, 252, 485
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	4 cut(s)	54, 143, 286, 382
HpaI	GTTAAC	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	3 cut(s)	381, 457, 466
Hpy188III	TCNNGA	2 cut(s)	51, 290
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	65, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	39, 133
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	179, 452, 481
LmnI	GCTCC	2 cut(s)	43, 251
LpnPI	CCDG	4 cut(s)	3, 30, 110, 422
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	3 cut(s)	72, 252, 485
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	3 cut(s)	181, 454, 483
MboI	GATC	3 cut(s)	179, 452, 481
MboII	GAAGA	5 cut(s)	275, 305, 308, 350, 423
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	2 cut(s)	258, 320
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	259, 276, 322
MseI	TTAA	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	3 cut(s)	179, 452, 481
NmuCI	GTSAC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	54, 286, 382
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	512
Sau3AI	GATC	3 cut(s)	179, 452, 481
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	4 cut(s)	48, 172, 238, 490
SfaNI	GCATC	1 cut(s)	125
SinI	GGWCC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	2 cut(s)	258, 320
SspMI	CTAG	3 cut(s)	72, 252, 485
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	50, 57
TasI	AATT	2 cut(s)	258, 320
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	3 cut(s)	54, 286, 382
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	498
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	3 cut(s)	101, 188, 326
TspRI	CASTG	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	150
XspI	CTAG	3 cut(s)	72, 252, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.