Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Reverse (-)

61177611 .. 61180259

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG431200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGATAGTTTTGGTTGGGATAGCTCACACATGATAACAAACACATCCACCTTATGGAGCAACCATCATCATCATGATCTTGATCAAGAAAGCTTATTGATGTCCAATAACTCCAGCTCCAGTGTTTTCAATATTCCAATCCAAGATCATCAACTCCAACAAGTCCAAGAATCTCACAAAATGATGAAGTCAAATACCCAAAGTCCACCGAGTAATGCTGAAATGGCTCAGCAACATTGGGGTGGTAAAAATTTGGCCGCTGAGCAATTGTGTCAGGCCCCTTTTATGATCAATAGGACTTATTCAATGAACTCACTGATCAGCAGTGCTTTCATGGCTGATGATCATCATGTCGAGACTCGGCCAGCATCAACGGCAACATGTTCCATTGAGTCTCTGGATTGCTTGCTCTCTGCTACTAATAGCAACACTGCAGAAGACACTACATCTCTAAATAAAGATGATGCAATTAATTCTACGATTTTTCCAGATTGTCGAAGATCAAACTTATGGAACTTCGGAACAGGCAGTGCTACTACTGCAGTCTCATCCGGGGAGACTGAGACCGCTAACAACACCTCAAGACCAAATAGAGAAACTCAAAGTTTCAATAAGAGAAGCCGCAACAATGACCAAAGTGATCCGCTCAAGTTTTATGCAGAAAATTATGGTCAACACTTTGATCTTCTTCAAACAGATTCTTCAACTACTACTACAGAAGGTGGTGGGTTTAGGCTCATCTCTGAAAACCCACCAAAGGCAAAGAAGCTCAAATCCTCATCAGATCAGAAGTCCACTGCTCTAAGCACAACCAACATCAACTTTCAACAGCCAACTTCATCATCACTATCAGGTTCCTCCACTGATCAAGAACCTGATCCAGAGGTCATTGCACAGATGAAGGAGATGATTTACCGCGCCGCGGCTTTCAGGCCAGTCAATTTGGGCATAGAGATGGTGGAGCGGCCCAAGAGGAAGAATGTGAAGATCTCGTCTGATCCACAGACGGTGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGGTTTTGCAGAAGCTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCTATGCTCGATGAGGCTGCAAATTACCTCAAGTTCCTCAGGTCACAAGTCAAGGCTTTAGAGAATTTGGGCCAAAAGATCGATTCCATGAGTAATTGTCTTCCTCCTACAAGCTTTGCTTTCTCTTTCAATCCTTCCTTTCCCATGCAGACCCACCATGTCCCACTCCACCTTAACCCTAATCATAATATCCATCAACCCCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

435

Amino Acids

48.39

Weight (kDa)

6.35

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	339 - 380	7.1e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	341 - 384	5.5e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccBSI	CCGCTC	2 cut(s)	646, 964
AccII	CGCG	2 cut(s)	918, 923
AciI	CCGC	8 cut(s)	258, 567, 622, 644, 916, 921, 923, 964
AclWI	GGATC	4 cut(s)	635, 872, 992, 1043
AcoI	YGGCCR	2 cut(s)	255, 362
AcsI	RAATTY	2 cut(s)	250, 1162
AfiI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	7 cut(s)	130, 306, 610, 692, 705, 827, 1228
AjnI	CCWGG	1 cut(s)	1072
AluBI	AGCT	6 cut(s)	24, 93, 117, 769, 1066, 1212
AluI	AGCT	6 cut(s)	24, 93, 117, 769, 1066, 1212
Alw26I	GTCTC	5 cut(s)	350, 399, 550, 551, 557
AlwI	GGATC	4 cut(s)	635, 872, 992, 1043
AlwNI	CAGNNNCTG	1 cut(s)	1066
AoxI	GGCC	6 cut(s)	255, 276, 362, 932, 965, 1168
ApeKI	GCWGC	2 cut(s)	1013, 1115
ApoI	RAATTY	2 cut(s)	250, 1162
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	3 cut(s)	277, 966, 1168
AsuC2I	CCSGG	1 cut(s)	553
AxyI	CCTNAGG	1 cut(s)	1136
BbsI	GAAGAC	2 cut(s)	444, 1190
BbvI	GCAGC	2 cut(s)	1000, 1102
BccI	CCATC	4 cut(s)	72, 949, 1081, 1299
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	1 cut(s)	1074
BclI	TGATCA	5 cut(s)	82, 288, 318, 343, 865
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BfaI	CTAG	1 cut(s)	1306
BfmI	CTRYAG	3 cut(s)	432, 540, 714
BglII	AGATCT	1 cut(s)	987
BisI	GCNGC	7 cut(s)	258, 622, 921, 924, 965, 1014, 1116
BlpI	GCTNAGC	2 cut(s)	228, 261
BlsI	GCNGC	7 cut(s)	259, 623, 922, 925, 966, 1015, 1117
Bme1390I	CCNGG	2 cut(s)	553, 1074
BmgT120I	GGNCC	3 cut(s)	277, 966, 1168
BmiI	GGNNCC	3 cut(s)	279, 856, 1071
BmrFI	CCNGG	2 cut(s)	553, 1074
BmsI	GCATC	2 cut(s)	377, 454
BpiI	GAAGAC	2 cut(s)	444, 1190
BpmI	CTGGAG	2 cut(s)	97, 103
Bpu1102I	GCTNAGC	2 cut(s)	228, 261
BpuEI	CTTGAG	3 cut(s)	565, 632, 1112
BpuMI	CCSGG	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	1179
BsaBI	GATNNNNATC	2 cut(s)	81, 345
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	552, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 757, 922
Bse1I	ACTGG	2 cut(s)	120, 935
Bse21I	CCTNAGG	1 cut(s)	1136
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	2 cut(s)	81, 345
BseBI	CCWGG	1 cut(s)	1074
BseCI	ATCGAT	1 cut(s)	1179
BseDI	CCNNGG	2 cut(s)	552, 921
BseGI	GGATG	2 cut(s)	44, 548
BseJI	GATNNNNATC	2 cut(s)	81, 345
BseLI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	4 cut(s)	242, 252, 552, 1150
BseNI	ACTGG	2 cut(s)	120, 935
BseXI	GCAGC	2 cut(s)	1000, 1102
Bsh1236I	CGCG	2 cut(s)	918, 923
BshFI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
BshVI	ATCGAT	1 cut(s)	1179
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	1244
BslI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
BsmAI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BsmFI	GGGAC	1 cut(s)	1244
BsnI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
Bso31I	GGTCTC	1 cut(s)	557
Bsp1720I	GCTNAGC	2 cut(s)	228, 261
BspACI	CCGC	8 cut(s)	258, 567, 622, 644, 916, 921, 923, 964
BspANI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
BspCNI	CTCAG	4 cut(s)	241, 253, 553, 1149
BspDI	ATCGAT	1 cut(s)	1179
BspFNI	CGCG	2 cut(s)	918, 923
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	3 cut(s)	279, 856, 1071
BspMAI	CTGCAG	2 cut(s)	436, 544
BspPI	GGATC	4 cut(s)	635, 872, 992, 1043
BspTNI	GGTCTC	1 cut(s)	557
BsrBI	CCGCTC	2 cut(s)	646, 964
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	2 cut(s)	120, 935
BssECI	CCNNGG	2 cut(s)	552, 921
Bst2UI	CCWGG	1 cut(s)	1074
Bst4CI	ACNGT	1 cut(s)	1009
BstC8I	GCNNGC	2 cut(s)	366, 407
BstDEI	CTNAG	5 cut(s)	228, 261, 561, 803, 1136
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	2 cut(s)	44, 548
BstFNI	CGCG	2 cut(s)	918, 923
BstHHI	GCGC	1 cut(s)	920
BstMAI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 335, 374, 539
BstNI	CCWGG	1 cut(s)	1074
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	551, 1072
BstSFI	CTRYAG	3 cut(s)	432, 540, 714
BstUI	CGCG	2 cut(s)	918, 923
BstV1I	GCAGC	2 cut(s)	1000, 1102
BstV2I	GAAGAC	2 cut(s)	444, 1190
BstX2I	RGATCY	1 cut(s)	987
BstYI	RGATCY	1 cut(s)	987
Bsu15I	ATCGAT	1 cut(s)	1179
Bsu36I	CCTNAGG	1 cut(s)	1136
BsuRI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
BsuTUI	ATCGAT	1 cut(s)	1179
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	44, 548
BtsI	GCAGTG	5 cut(s)	331, 429, 535, 795, 1092
BtsIMutI	CAGTG	9 cut(s)	127, 314, 331, 429, 535, 795, 861, 1045, 1092
Cac8I	GCNNGC	2 cut(s)	366, 407
CaiI	CAGNNNCTG	1 cut(s)	1066
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	3 cut(s)	277, 966, 1168
Cfr42I	CCGCGG	1 cut(s)	924
ClaI	ATCGAT	1 cut(s)	1179
CviAII	CATG	8 cut(s)	31, 74, 334, 350, 381, 1186, 1243, 1256
DdeI	CTNAG	5 cut(s)	228, 261, 561, 803, 1136
EaeI	YGGCCR	2 cut(s)	255, 362
Eco31I	GGTCTC	1 cut(s)	557
Eco81I	CCTNAGG	1 cut(s)	1136
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	1072
FaeI	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
FalI	AAGNNNNNCTT	2 cut(s)	1201, 1233
FaqI	GGGAC	1 cut(s)	1244
FatI	CATG	8 cut(s)	30, 73, 333, 349, 380, 1185, 1242, 1255
FbaI	TGATCA	5 cut(s)	82, 288, 318, 343, 865
Fnu4HI	GCNGC	7 cut(s)	258, 622, 921, 924, 965, 1014, 1116
FokI	GGATG	2 cut(s)	31, 535
Fsp4HI	GCNGC	7 cut(s)	258, 622, 921, 924, 965, 1014, 1116
FspBI	CTAG	1 cut(s)	1306
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	7 cut(s)	258, 622, 921, 924, 965, 1014, 1116
GsuI	CTGGAG	2 cut(s)	97, 103
HaeIII	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HindIII	AAGCTT	2 cut(s)	91, 1210
HinfI	GANTC	5 cut(s)	170, 358, 392, 698, 1181
HpaII	CCGG	1 cut(s)	552
Hpy166II	GTNNAC	3 cut(s)	206, 674, 795
Hpy188I	TCNGA	5 cut(s)	521, 745, 784, 789, 997
Hpy188III	TCNNGA	9 cut(s)	74, 80, 86, 355, 398, 488, 582, 869, 881
Hpy8I	GTNNAC	3 cut(s)	206, 674, 795
HpyAV	CCTTC	3 cut(s)	713, 895, 1242
HpyCH4III	ACNGT	1 cut(s)	1009
HpyCH4V	TGCA	9 cut(s)	434, 467, 542, 659, 893, 1016, 1060, 1118, 1246
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 335, 374, 539
HpyF3I	CTNAG	5 cut(s)	228, 261, 561, 803, 1136
Hsp92II	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
HspAI	GCGC	1 cut(s)	918
Ksp22I	TGATCA	5 cut(s)	82, 288, 318, 343, 865
KspI	CCGCGG	1 cut(s)	924
LmnI	GCTCC	3 cut(s)	57, 122, 961
Lsp1109I	GCAGC	2 cut(s)	1000, 1102
LweI	GCATC	2 cut(s)	377, 454
MaeI	CTAG	1 cut(s)	1306
MaeIII	GTNAC	1 cut(s)	1140
MbiI	CCGCTC	2 cut(s)	646, 964
MboII	GAAGA	8 cut(s)	449, 510, 677, 680, 693, 988, 997, 1190
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	987
MlyI	GAGTC	2 cut(s)	352, 401
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	2 cut(s)	471, 1272
MslI	CAYNNNNRTG	3 cut(s)	72, 240, 953
MspA1I	CMGCKG	2 cut(s)	260, 923
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	553, 1074
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	1074
MvnI	CGCG	2 cut(s)	918, 923
MwoI	GCNNNNNNNGC	4 cut(s)	224, 335, 374, 539
NciI	CCSGG	1 cut(s)	553
NlaIII	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
NlaIV	GGNNCC	3 cut(s)	279, 856, 1071
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	1140
NspI	RCATGY	1 cut(s)	384
PagI	TCATGA	1 cut(s)	73
PciI	ACATGT	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	170, 698, 1181
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	7 cut(s)	259, 623, 922, 925, 966, 1015, 1117
PleI	GAGTC	2 cut(s)	352, 400
PpsI	GAGTC	2 cut(s)	352, 400
PscI	ACATGT	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	1072
PspGI	CCWGG	1 cut(s)	1072
PspN4I	GGNNCC	3 cut(s)	279, 856, 1071
PspPI	GGNCC	3 cut(s)	277, 966, 1168
PstI	CTGCAG	2 cut(s)	436, 544
PstNI	CAGNNNCTG	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	987
RseI	CAYNNNNRTG	3 cut(s)	72, 240, 953
SacII	CCGCGG	1 cut(s)	924
SaqAI	TTAA	2 cut(s)	471, 1272
SatI	GCNGC	7 cut(s)	258, 622, 921, 924, 965, 1014, 1116
Sau96I	GGNCC	3 cut(s)	277, 966, 1168
SchI	GAGTC	2 cut(s)	352, 401
ScrFI	CCNGG	2 cut(s)	553, 1074
SfaNI	GCATC	2 cut(s)	377, 454
SfcI	CTRYAG	3 cut(s)	432, 540, 714
Sfr303I	CCGCGG	1 cut(s)	924
SgrBI	CCGCGG	1 cut(s)	924
SmiMI	CAYNNNNRTG	3 cut(s)	72, 240, 953
SmlI	CTYRAG	3 cut(s)	580, 647, 1127
SmoI	CTYRAG	3 cut(s)	580, 647, 1127
SsiI	CCGC	8 cut(s)	258, 567, 622, 644, 916, 921, 923, 964
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	1306
StyD4I	CCNGG	2 cut(s)	551, 1072
TaaI	ACNGT	1 cut(s)	1009
TaqI	TCGA	4 cut(s)	354, 496, 1107, 1179
TauI	GCSGC	5 cut(s)	260, 624, 923, 926, 967
TfiI	GAWTC	3 cut(s)	170, 698, 1181
Tru1I	TTAA	2 cut(s)	471, 1272
Tru9I	TTAA	2 cut(s)	471, 1272
TscAI	CASTG	9 cut(s)	127, 321, 331, 436, 535, 802, 868, 1045, 1099
TseFI	GTSAC	1 cut(s)	1140
TseI	GCWGC	2 cut(s)	1013, 1115
Tsp45I	GTSAC	1 cut(s)	1140
TspDTI	ATGAA	5 cut(s)	200, 322, 323, 828, 914
TspRI	CASTG	9 cut(s)	127, 321, 331, 436, 535, 802, 868, 1045, 1099
Van91I	CCANNNNNTGG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	2 cut(s)	250, 1162
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XspI	CTAG	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.