Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Forward (+)

18077876 .. 18080818

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1198300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGACGGTTTGGATTGGGACGGCTCACACATCACAAATACATCAACCTTATTATGGAGCAATCATCAAGTACATGATCTTGAAGAAAGCTTGTTGTTGTCCAACTCAAGTTCCAGTGCCTTCATTCCAATCCAAGAGCTTCCGAAGGTCCAAACATCGCATGTGATTATGAATTCAAATGCTGAAAGACCAAGCAATATTGGCACTCATCAAATTGCTCATCAGAAAAATCGTTGTGGTTTGGATTCAGTGCATGATATGCCAACTTTGAGAGCTGATGAATTGTGTCAATCCCCTTTGAATATCAGCAGGCCTTATAATTTGATGAGTTCACTGAGCACTAGTACTTTCATGGCTGCTGATCATTATGGCATTATTGGGAAACATGTACAACCACAAGCCAATTTTCATGGCTTACAAGATCAACATGTCAAGGCTAAGCCAGCAACGACTTGCTCTATTGAGTCCTTGGATTGCTTGCTCTCAGGCACTAATAGCAACACCGACACATCTGTAGAAGACGACGATGGTATTTCTATGCTTTTTTCGGATTGCAGAAGAAACTTGTGGAACTTTGGAGCAGGCAATAATAGTGCAATCTCTTCTGGAGATTCTGAGAACAACGAAACTGTAGTCTCTCAAAGCTCATCAGATTTATATGTCCAAATCCAAGGTAAGCCAAATTCCACAAAGAGAAGCCATGATCAAAGTGAGCCCAAATTGCACGAAACAAATTATAGTCACTTCGGTCTTCTTCAAACAGATTATTCTTCTACTAGTGAAGGCGGTTTTAGGCTCATATCTGAAACCCCACCAAAGCCGAAGAAACTCAGATCCGATAACAAGCGTCCAAGCTCATCCAACATCAGCTTTCGACAGCCATCTTCATCTGTGCCAACTTTGTCTATTGAAGAACCTGATCCCGAGGCCATTGCACAGATGAAAGAGATGATTTATCGCGCTGCGGCTTTCAGACCTGTGAACTTGGGGCTGGAGATGGTGGAGAGGCCAAAGAGGAAGAATGTGAAAATATCATCTGATCCACAGACTGCGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTGGTTCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTCTTGAGGTCACAGGTCAAGGCACTTGAAAATTTAGGCCAAAAAATTGAGTCCATGAGTAATTTTAATATTCCTCCTACAAGCTTTGCTTTCTCTTTCAACCCATCTTTTCCCATGCAAACCCATAATCATAACCCACTCCAAAACCCTTATCATATCGACCAACCCCACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

450

Amino Acids

49.93

Weight (kDa)

6.31

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	351 - 394	4.7e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	355 - 398	2.3e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccII	CGCG	1 cut(s)	960
AciI	CCGC	3 cut(s)	786, 965, 1052
AclWI	GGATC	4 cut(s)	828, 914, 1034, 1085
AcsI	RAATTY	3 cut(s)	172, 682, 1204
AfaI	GTAC	3 cut(s)	72, 346, 390
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflIII	ACRYGT	2 cut(s)	385, 427
AgsI	TTSAA	7 cut(s)	83, 177, 301, 758, 911, 1202, 1273
AhlI	ACTAGT	2 cut(s)	341, 776
AjnI	CCWGG	1 cut(s)	1114
AluBI	AGCT	7 cut(s)	90, 139, 275, 645, 855, 870, 1257
AluI	AGCT	7 cut(s)	90, 139, 275, 645, 855, 870, 1257
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	4 cut(s)	828, 914, 1034, 1085
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	4 cut(s)	311, 927, 1007, 1210
ApeKI	GCWGC	4 cut(s)	356, 962, 1055, 1157
ApoI	RAATTY	3 cut(s)	172, 682, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	618, 650
AspLEI	GCGC	1 cut(s)	962
AspS9I	GGNCC	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	717
BbsI	GAAGAC	2 cut(s)	525, 743
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	4 cut(s)	343, 949, 1042, 1144
BccI	CCATC	5 cut(s)	521, 889, 991, 1123, 1285
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BciT130I	CCWGG	1 cut(s)	1116
BclI	TGATCA	2 cut(s)	361, 703
BcoDI	GTCTC	1 cut(s)	640
BcuI	ACTAGT	2 cut(s)	341, 776
BfaI	CTAG	2 cut(s)	342, 777
BfmI	CTRYAG	2 cut(s)	513, 630
BisI	GCNGC	6 cut(s)	357, 963, 966, 1053, 1056, 1158
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	6 cut(s)	358, 964, 967, 1054, 1057, 1159
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	1116
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	1113
BmrFI	CCNGG	1 cut(s)	1116
BmsI	GCATC	1 cut(s)	1148
BpiI	GAAGAC	2 cut(s)	525, 743
BpmI	CTGGAG	2 cut(s)	627, 1013
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	3 cut(s)	91, 1154, 1198
BsaJI	CCNNGG	3 cut(s)	468, 670, 924
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	1116
BseDI	CCNNGG	3 cut(s)	468, 670, 924
BseGI	GGATG	1 cut(s)	857
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	4 cut(s)	326, 498, 606, 844
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	343, 949, 1042, 1144
Bsh1236I	CGCG	1 cut(s)	960
BshFI	GGCC	4 cut(s)	313, 929, 1009, 1212
BsiHKAI	GWGCWC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	923
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	4 cut(s)	313, 929, 1009, 1212
BsoBI	CYCGRG	1 cut(s)	923
Bsp1286I	GDGCHC	2 cut(s)	341, 717
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	3 cut(s)	786, 965, 1052
BspANI	GGCC	4 cut(s)	313, 929, 1009, 1212
BspCNI	CTCAG	4 cut(s)	327, 497, 607, 843
BspFNI	CGCG	1 cut(s)	960
BspLI	GGNNCC	1 cut(s)	1113
BspPI	GGATC	4 cut(s)	828, 914, 1034, 1085
BsrDI	GCAATG	1 cut(s)	930
BsrGI	TGTACA	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	468, 670, 924
BssMI	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
BssT1I	CCWWGG	2 cut(s)	468, 670
Bst2UI	CCWGG	1 cut(s)	1116
Bst4CI	ACNGT	3 cut(s)	8, 631, 1346
Bst6I	CTCTTC	1 cut(s)	607
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	388
BstC8I	GCNNGC	4 cut(s)	311, 444, 479, 583
BstDEI	CTNAG	5 cut(s)	335, 438, 484, 615, 830
BstF5I	GGATG	1 cut(s)	857
BstFNI	CGCG	1 cut(s)	960
BstHHI	GCGC	1 cut(s)	962
BstKTI	GATC	8 cut(s)	79, 364, 424, 706, 836, 922, 1042, 1080
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
BstMWI	GCNNNNNNNGC	5 cut(s)	201, 259, 443, 495, 721
BstNI	CCWGG	1 cut(s)	1116
BstNSI	RCATGY	3 cut(s)	164, 389, 431
BstSCI	CCNGG	1 cut(s)	1114
BstSFI	CTRYAG	2 cut(s)	513, 630
BstUI	CGCG	1 cut(s)	960
BstV1I	GCAGC	4 cut(s)	343, 949, 1042, 1144
BstV2I	GAAGAC	2 cut(s)	525, 743
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	313, 929, 1009, 1212
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	857
BtsI	GCAGTG	1 cut(s)	1134
BtsIMutI	CAGTG	5 cut(s)	121, 255, 332, 1087, 1134
Cac8I	GCNNGC	4 cut(s)	311, 444, 479, 583
CfoI	GCGC	1 cut(s)	962
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	836
Csp6I	GTAC	3 cut(s)	71, 345, 389
CviQI	GTAC	3 cut(s)	71, 345, 389
DdeI	CTNAG	5 cut(s)	335, 438, 484, 615, 830
DpnI	GATC	8 cut(s)	78, 363, 423, 705, 835, 921, 1041, 1079
DpnII	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
Eco130I	CCWWGG	2 cut(s)	468, 670
Eco147I	AGGCCT	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	923
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	1114
EcoT14I	CCWWGG	2 cut(s)	468, 670
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	2 cut(s)	468, 670
FalI	AAGNNNNNCTT	2 cut(s)	1246, 1278
FaqI	GGGAC	1 cut(s)	32
FbaI	TGATCA	2 cut(s)	361, 703
Fnu4HI	GCNGC	6 cut(s)	357, 963, 966, 1053, 1056, 1158
FokI	GGATG	1 cut(s)	844
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	6 cut(s)	357, 963, 966, 1053, 1056, 1158
FspBI	CTAG	2 cut(s)	342, 777
GlaI	GCGC	1 cut(s)	961
GluI	GCNGC	6 cut(s)	357, 963, 966, 1053, 1056, 1158
GsuI	CTGGAG	2 cut(s)	627, 1013
HaeIII	GGCC	4 cut(s)	313, 929, 1009, 1212
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	962
Hin6I	GCGC	1 cut(s)	960
HinP1I	GCGC	1 cut(s)	960
HindIII	AAGCTT	2 cut(s)	88, 1255
HinfI	GANTC	4 cut(s)	245, 464, 611, 1223
Hpy166II	GTNNAC	2 cut(s)	332, 982
Hpy188III	TCNNGA	4 cut(s)	80, 606, 923, 1177
Hpy8I	GTNNAC	2 cut(s)	332, 982
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	3 cut(s)	130, 139, 776
HpyCH4III	ACNGT	3 cut(s)	8, 631, 1346
HpyF10VI	GCNNNNNNNGC	5 cut(s)	201, 259, 443, 495, 721
HpyF3I	CTNAG	5 cut(s)	335, 438, 484, 615, 830
HspAI	GCGC	1 cut(s)	960
Ksp22I	TGATCA	2 cut(s)	361, 703
Kzo9I	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
LmnI	GCTCC	2 cut(s)	57, 578
Lsp1109I	GCAGC	4 cut(s)	343, 949, 1042, 1144
LweI	GCATC	1 cut(s)	1148
MaeI	CTAG	2 cut(s)	342, 777
MaeIII	GTNAC	2 cut(s)	740, 1182
MalI	GATC	8 cut(s)	78, 363, 423, 705, 835, 921, 1041, 1079
MboI	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	2 cut(s)	341, 717
MlyI	GAGTC	2 cut(s)	473, 1232
MmeI	TCCRAC	2 cut(s)	126, 885
MnlI	CCTC	8 cut(s)	919, 999, 1008, 1062, 1068, 1147, 1173, 1257
MseI	TTAA	1 cut(s)	1239
MspR9I	CCNGG	1 cut(s)	1116
MvaI	CCWGG	1 cut(s)	1116
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	5 cut(s)	201, 259, 443, 495, 721
NdeII	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
NlaIV	GGNNCC	1 cut(s)	1113
NmuCI	GTSAC	2 cut(s)	740, 1182
NspI	RCATGY	3 cut(s)	164, 389, 431
PceI	AGGCCT	1 cut(s)	313
PciI	ACATGT	2 cut(s)	385, 427
PfeI	GAWTC	2 cut(s)	245, 611
PkrI	GCNGC	6 cut(s)	358, 964, 967, 1054, 1057, 1159
PleI	GAGTC	2 cut(s)	472, 1231
PpsI	GAGTC	2 cut(s)	472, 1231
PscI	ACATGT	2 cut(s)	385, 427
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	1114
PspGI	CCWGG	1 cut(s)	1114
PspN4I	GGNNCC	1 cut(s)	1113
PspPI	GGNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	833
RsaI	GTAC	3 cut(s)	72, 346, 390
RsaNI	GTAC	3 cut(s)	71, 345, 389
SaqAI	TTAA	1 cut(s)	1239
SatI	GCNGC	6 cut(s)	357, 963, 966, 1053, 1056, 1158
Sau3AI	GATC	8 cut(s)	76, 361, 421, 703, 833, 919, 1039, 1077
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	2 cut(s)	473, 1232
ScrFI	CCNGG	1 cut(s)	1116
SduI	GDGCHC	2 cut(s)	341, 717
SfaNI	GCATC	1 cut(s)	1148
SfcI	CTRYAG	2 cut(s)	513, 630
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	3 cut(s)	106, 1169, 1177
SmoI	CTYRAG	3 cut(s)	106, 1169, 1177
SpeI	ACTAGT	2 cut(s)	341, 776
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	786, 965, 1052
SspI	AATATT	2 cut(s)	199, 1243
SspMI	CTAG	2 cut(s)	342, 777
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	1114
StyI	CCWWGG	2 cut(s)	468, 670
TaaI	ACNGT	3 cut(s)	8, 631, 1346
TaqI	TCGA	2 cut(s)	874, 1332
TaqII	GACCGA	1 cut(s)	737
TatI	WGTACW	3 cut(s)	70, 344, 388
TauI	GCSGC	2 cut(s)	968, 1055
TfiI	GAWTC	2 cut(s)	245, 611
Tru1I	TTAA	1 cut(s)	1239
Tru9I	TTAA	1 cut(s)	1239
TscAI	CASTG	5 cut(s)	121, 255, 339, 1087, 1141
TseFI	GTSAC	2 cut(s)	740, 1182
TseI	GCWGC	4 cut(s)	356, 962, 1055, 1157
Tsp45I	GTSAC	2 cut(s)	740, 1182
TspDTI	ATGAA	7 cut(s)	112, 185, 294, 340, 398, 876, 956
TspRI	CASTG	5 cut(s)	121, 255, 339, 1087, 1141
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	3 cut(s)	172, 682, 1204
XceI	RCATGY	3 cut(s)	164, 389, 431
XspI	CTAG	2 cut(s)	342, 777
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.