Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002928.1

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Reverse (-)

144769 .. 145458

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002928.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggatagttttggttgggatagctcacacatgataacaaacacatccaccttatggagcaaccatcatcaacatgatcttgatcaagaaagcttattgatgtccaataactcgagctccagtgttttcaatattccaatccaagatcatcaactccaacaagtccaagaatctcacaaaatgatgaagtcaaatacccaaagtccaccgagtaatgctgaaatggctcagcaacattggggtggtaaaaatttggccgctgagcaattgtgtcaggctccttttatgatcaacgagactcggccagcatcaacggcaacatgttccattgagtctctggattgcttgctctctgctactaatagcaacactgcagaagacactacatctctaaataaagatgatgcaattaattctacgatttttccagattgtcgaagatcaaacttatggaacttcggaataggcagtgctactactgcagtctcatccggggagactgagaccgctaacaacacctcaagaccaaatagagaaactcaaagtttcaataagagaagccgcaacaatgaccaaagtgatccgctcaagttttatgcagaaaattatggtcaacactttgatcttcttcaaacagattcttcaactagtggagcggcccaagaggaagaatgtgaagatctcgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

229

Amino Acids

25.39

Weight (kDa)

4.62

Isoelectric Point (pI)

69.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccBSI	CCGCTC	2 cut(s)	586, 656
AciI	CCGC	5 cut(s)	258, 507, 562, 584, 656
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	2 cut(s)	255, 302
AcsI	RAATTY	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	130, 550, 632, 645
AhlI	ACTAGT	1 cut(s)	647
AluBI	AGCT	3 cut(s)	24, 93, 117
AluI	AGCT	3 cut(s)	24, 93, 117
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	5 cut(s)	290, 339, 490, 491, 497
AlwI	GGATC	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	255, 302, 657
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	658
AsuC2I	CCSGG	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	330
BclI	TGATCA	2 cut(s)	82, 288
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	5 cut(s)	290, 339, 490, 491, 497
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	2 cut(s)	372, 480
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	3 cut(s)	258, 562, 657
BlpI	GCTNAGC	2 cut(s)	228, 261
BlsI	GCNGC	3 cut(s)	259, 563, 658
Bme1390I	CCNGG	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	317, 394
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	103
Bpu1102I	GCTNAGC	2 cut(s)	228, 261
BpuEI	CTTGAG	2 cut(s)	505, 572
BpuMI	CCSGG	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	492
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	44, 488
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	242, 252, 492
BseNI	ACTGG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	257, 304, 659
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	492
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	5 cut(s)	290, 339, 490, 491, 497
BsnI	GGCC	3 cut(s)	257, 304, 659
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
Bsp1720I	GCTNAGC	2 cut(s)	228, 261
BspACI	CCGC	5 cut(s)	258, 507, 562, 584, 656
BspANI	GGCC	3 cut(s)	257, 304, 659
BspCNI	CTCAG	3 cut(s)	241, 253, 493
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	2 cut(s)	376, 484
BspPI	GGATC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	2 cut(s)	586, 656
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
BstC8I	GCNNGC	2 cut(s)	306, 347
BstDEI	CTNAG	3 cut(s)	228, 261, 501
BstF5I	GGATG	2 cut(s)	44, 488
BstKTI	GATC	8 cut(s)	79, 85, 148, 291, 443, 583, 625, 682
BstMAI	GTCTC	5 cut(s)	290, 339, 490, 491, 497
BstMBI	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 314, 479
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	491
BstSFI	CTRYAG	2 cut(s)	372, 480
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	257, 304, 659
BtsCI	GGATG	2 cut(s)	44, 488
BtsI	GCAGTG	2 cut(s)	369, 475
BtsIMutI	CAGTG	3 cut(s)	127, 369, 475
Cac8I	GCNNGC	2 cut(s)	306, 347
Cfr13I	GGNCC	1 cut(s)	658
CviAII	CATG	3 cut(s)	31, 74, 321
CviJI	RGCY	9 cut(s)	24, 93, 117, 227, 257, 278, 304, 561, 659
CviKI_1	RGCY	9 cut(s)	24, 93, 117, 227, 257, 278, 304, 561, 659
DdeI	CTNAG	3 cut(s)	228, 261, 501
DpnI	GATC	8 cut(s)	78, 84, 147, 290, 442, 582, 624, 681
DpnII	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
EaeI	YGGCCR	2 cut(s)	255, 302
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	3 cut(s)	34, 77, 324
FaiI	YATR	8 cut(s)	32, 55, 75, 287, 322, 451, 597, 609
FatI	CATG	3 cut(s)	30, 73, 320
FbaI	TGATCA	2 cut(s)	82, 288
Fnu4HI	GCNGC	3 cut(s)	258, 562, 657
FokI	GGATG	2 cut(s)	31, 475
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	258, 562, 657
FspBI	CTAG	1 cut(s)	648
GluI	GCNGC	3 cut(s)	258, 562, 657
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	257, 304, 659
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	3 cut(s)	34, 77, 324
HincII	GTYRAC	1 cut(s)	614
HindII	GTYRAC	1 cut(s)	614
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	4 cut(s)	170, 298, 332, 638
HpaII	CCGG	1 cut(s)	492
Hpy166II	GTNNAC	2 cut(s)	206, 614
Hpy188I	TCNGA	2 cut(s)	461, 689
Hpy188III	TCNNGA	5 cut(s)	80, 86, 338, 428, 522
Hpy8I	GTNNAC	2 cut(s)	206, 614
HpyCH4V	TGCA	4 cut(s)	374, 407, 482, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 314, 479
HpyF3I	CTNAG	3 cut(s)	228, 261, 501
Hsp92II	CATG	3 cut(s)	34, 77, 324
Ksp22I	TGATCA	2 cut(s)	82, 288
Kzo9I	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
LmnI	GCTCC	4 cut(s)	57, 122, 283, 653
LpnPI	CCDG	6 cut(s)	133, 260, 318, 323, 441, 505
LweI	GCATC	2 cut(s)	317, 394
MaeI	CTAG	1 cut(s)	648
MalI	GATC	8 cut(s)	78, 84, 147, 290, 442, 582, 624, 681
MbiI	CCGCTC	2 cut(s)	586, 656
MboI	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
MboII	GAAGA	7 cut(s)	389, 450, 617, 620, 633, 680, 689
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	5 cut(s)	250, 266, 408, 412, 604
MlyI	GAGTC	2 cut(s)	292, 341
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	529, 658
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	72, 240
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	493
MunI	CAATTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	224, 314, 479
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
NlaIII	CATG	3 cut(s)	34, 77, 324
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	280
NspI	RCATGY	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	170, 638
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	259, 563, 658
PleI	GAGTC	2 cut(s)	292, 340
PpsI	GAGTC	2 cut(s)	292, 340
PscI	ACATGT	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	658
PspXI	VCTCGAGB	1 cut(s)	112
PstI	CTGCAG	2 cut(s)	376, 484
PsuI	RGATCY	1 cut(s)	679
RseI	CAYNNNNRTG	2 cut(s)	72, 240
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	258, 562, 657
Sau3AI	GATC	8 cut(s)	76, 82, 145, 288, 440, 580, 622, 679
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	2 cut(s)	292, 341
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	5 cut(s)	26, 53, 95, 119, 521
SfaNI	GCATC	2 cut(s)	317, 394
SfcI	CTRYAG	2 cut(s)	372, 480
Sfr274I	CTCGAG	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	72, 240
SmlI	CTYRAG	3 cut(s)	112, 520, 587
SmoI	CTYRAG	3 cut(s)	112, 520, 587
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	5 cut(s)	250, 266, 408, 412, 604
SsiI	CCGC	5 cut(s)	258, 507, 562, 584, 656
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	648
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	491
TaqI	TCGA	2 cut(s)	113, 436
TasI	AATT	5 cut(s)	250, 266, 408, 412, 604
TauI	GCSGC	3 cut(s)	260, 564, 659
TfiI	GAWTC	2 cut(s)	170, 638
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	127, 376, 475
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	127, 376, 475
Van91I	CCANNNNNTGG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.