Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Forward (+)

3824012 .. 3826252

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGACGGTTCGGATTGGGACGGGTCATACATCACAAACACATCAACCTTATTATGGAACAACCATCAAGTACATGATCTTGAAGAAAGCTTGTTGGTGTCGAGCTCAGGTCCCAGTGCTTTCATTCCAATCCAAGAGTTCCAAAAAGTCCAAACATCGCATGCGATCATGAACTCAAATACCGAAAGAGCGAGCAAGAGTGCTCAAATTGTTCATCAGCAAAATCCTTGTTTGCTGGACTCAGTGCATGCTATGCCAACTTTGAGAGCTGATCAATTGTGTCAAGCCCCTTTGATGATCAACAAGCCTAATTATAATTTGATGGGTTCACTGAGCACTGGTATTTTCATGGCTGCTGATCATTATGGAGATACTGGGAAACATGTACAAACACAAGTCATTCATGGCTTACAAGATCATGGCAAGGCTAAGCCAGCAACGACACGCTCCGTTGAGTCCTTGGATTGCTTGCTCTCAGGTACTAATAGCAACACTGACACATCTGTGGAAGATGATGATGGAATTTCTATGCTTTTCTCAGATTGCAGAAGAAACTTATGGAACTTTGGAGCAGGCAATAATAGTGCAATCTCATCCGGAGAGTCTGAGAACAACGAAACAGTAGTCTCTCAAAGCTCATCAGATTTATATGTCCAAAATCAGGGTAACAAAAATTCCACAAAGAGAAGCCATGATCAAAGTGAGCTAAATGGAGCCAATCATAGTCACTTTGGTCTTCTTCAAACAGATTCTTCTACTACGGAAGGTGGTTTTCGTCTCATCTCCGAAAACCCACCAAACCCAAAGAAGCCCAGATCAGATAAGCGTCCAAGCTCATCCAATATCAACTTTCAACAGCCAAGTTCATCTGTATCAGCTTCCTCTATTGAAGAGCCTGATCCAGAGGTCATTGCACAAATGAAAGAGATGATTTATCGTGCTGCGGCTTTTAGGCCTGTGAACTTGGGGATGGACATGGTTGAAAGGCCAAAGAGGAAGAATGTTAAGATCTCATCTGACCCACAGACCGTGGCTGCAAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTGGTTCCTGGTGGAGGCAAGATGGACACTGCATCTATGCTTGATGAGGCTGCAAATTATCTCAAGTTCTTGAGGTCACAGGTGAAGGCACTTGAAAATTTAGGCCAAAAAATTGAGTCCATGAGTAATTCTAATATTCCTCCTGCAAGCTTTGCTTTCTCTTTCAACCCCTCTTTTCCCATGCAAACCCATCATCATGTCCCACTCCACAACCCTAATCATATCCACCAACCCCACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

443

Amino Acids

48.73

Weight (kDa)

6.34

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AccIII	TCCGGA	1 cut(s)	596
AciI	CCGC	1 cut(s)	944
AclWI	GGATC	1 cut(s)	893
AcsI	RAATTY	3 cut(s)	522, 673, 1183
AfaI	GTAC	3 cut(s)	72, 387, 481
AfiI	CCNNNNNNNGG	3 cut(s)	54, 661, 1100
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	7 cut(s)	83, 743, 854, 890, 983, 1181, 1252
AjnI	CCWGG	1 cut(s)	1093
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	8 cut(s)	90, 105, 269, 636, 706, 834, 878, 1236
AluI	AGCT	8 cut(s)	90, 105, 269, 636, 706, 834, 878, 1236
Alw21I	GWGCWC	3 cut(s)	107, 205, 338
Alw26I	GTCTC	2 cut(s)	631, 782
AlwI	GGATC	1 cut(s)	893
Aor13HI	TCCGGA	1 cut(s)	596
AoxI	GGCC	3 cut(s)	953, 986, 1189
ApeKI	GCWGC	4 cut(s)	353, 941, 1034, 1136
ApoI	RAATTY	3 cut(s)	522, 673, 1183
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	1180
AvaII	GGWCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	3 cut(s)	107, 205, 338
BbvI	GCAGC	4 cut(s)	340, 928, 1021, 1123
BccI	CCATC	6 cut(s)	72, 316, 512, 964, 1102, 1284
BciT130I	CCWGG	1 cut(s)	1095
BclI	TGATCA	4 cut(s)	271, 297, 358, 694
BcoDI	GTCTC	2 cut(s)	631, 782
BglII	AGATCT	1 cut(s)	1008
BisI	GCNGC	5 cut(s)	354, 942, 945, 1035, 1137
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	5 cut(s)	355, 943, 946, 1036, 1138
Bme1390I	CCNGG	1 cut(s)	1095
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	3 cut(s)	112, 715, 1092
BmrFI	CCNGG	1 cut(s)	1095
BmrI	ACTGGG	2 cut(s)	108, 384
BmsI	GCATC	1 cut(s)	1127
BmuI	ACTGGG	2 cut(s)	108, 384
BpiI	GAAGAC	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	1133, 1177
BsaJI	CCNNGG	2 cut(s)	459, 1029
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 661, 1100
Bse1I	ACTGG	3 cut(s)	114, 343, 379
Bse3DI	GCAATG	1 cut(s)	909
BseAI	TCCGGA	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	1095
BseDI	CCNNGG	2 cut(s)	459, 1029
BseGI	GGATG	3 cut(s)	593, 836, 975
BseLI	CCNNNNNNNGG	3 cut(s)	54, 661, 1100
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	6 cut(s)	120, 255, 323, 489, 552, 597
BseNI	ACTGG	3 cut(s)	114, 343, 379
BseXI	GCAGC	4 cut(s)	340, 928, 1021, 1123
BshFI	GGCC	3 cut(s)	955, 988, 1191
BsiHKAI	GWGCWC	3 cut(s)	107, 205, 338
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	3 cut(s)	32, 96, 1271
BslI	CCNNNNNNNGG	3 cut(s)	54, 661, 1100
BsmAI	GTCTC	2 cut(s)	631, 782
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	3 cut(s)	32, 96, 1271
BsnI	GGCC	3 cut(s)	955, 988, 1191
Bsp1286I	GDGCHC	3 cut(s)	107, 205, 338
Bsp13I	TCCGGA	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	385
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	944
BspANI	GGCC	3 cut(s)	955, 988, 1191
BspCNI	CTCAG	6 cut(s)	119, 254, 324, 488, 551, 598
BspEI	TCCGGA	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	112, 715, 1092
BspPI	GGATC	1 cut(s)	893
BspQI	GCTCTTC	1 cut(s)	885
BsrDI	GCAATG	1 cut(s)	909
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	114, 343, 379
BssECI	CCNNGG	2 cut(s)	459, 1029
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	1095
Bst4CI	ACNGT	4 cut(s)	8, 622, 1030, 1325
Bst6I	CTCTTC	1 cut(s)	885
BstAPI	GCANNNNNTGC	2 cut(s)	253, 1238
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	7 cut(s)	162, 193, 249, 435, 470, 574, 1234
BstDEI	CTNAG	7 cut(s)	106, 241, 332, 429, 475, 538, 606
BstDSI	CCRYGG	1 cut(s)	1029
BstENI	CCTNNNNNAGG	1 cut(s)	1098
BstF5I	GGATG	3 cut(s)	593, 836, 975
BstMAI	GTCTC	2 cut(s)	631, 782
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 434, 1238
BstNI	CCWGG	1 cut(s)	1095
BstNSI	RCATGY	3 cut(s)	164, 251, 386
BstSCI	CCNGG	1 cut(s)	1093
BstV1I	GCAGC	4 cut(s)	340, 928, 1021, 1123
BstV2I	GAAGAC	1 cut(s)	728
BstX2I	RGATCY	1 cut(s)	1008
BstYI	RGATCY	1 cut(s)	1008
BsuRI	GGCC	3 cut(s)	955, 988, 1191
BtgI	CCRYGG	1 cut(s)	1029
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	593, 836, 975
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	7 cut(s)	121, 249, 329, 336, 492, 1066, 1113
Cac8I	GCNNGC	7 cut(s)	162, 193, 249, 435, 470, 574, 1234
CciI	TCATGA	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	3 cut(s)	71, 386, 480
CviQI	GTAC	3 cut(s)	71, 386, 480
DdeI	CTNAG	7 cut(s)	106, 241, 332, 429, 475, 538, 606
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	955
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	1098
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	1093
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	782
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FaqI	GGGAC	3 cut(s)	32, 96, 1271
FbaI	TGATCA	4 cut(s)	271, 297, 358, 694
Fnu4HI	GCNGC	5 cut(s)	354, 942, 945, 1035, 1137
FokI	GGATG	3 cut(s)	580, 823, 982
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	5 cut(s)	354, 942, 945, 1035, 1137
GluI	GCNGC	5 cut(s)	354, 942, 945, 1035, 1137
HaeIII	GGCC	3 cut(s)	955, 988, 1191
HapII	CCGG	1 cut(s)	597
HgaI	GACGC	1 cut(s)	815
HindIII	AAGCTT	2 cut(s)	88, 1234
HinfI	GANTC	6 cut(s)	239, 455, 602, 749, 1056, 1202
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	1180
Hpy166II	GTNNAC	2 cut(s)	329, 961
Hpy188I	TCNGA	7 cut(s)	13, 541, 607, 643, 787, 820, 1018
Hpy188III	TCNNGA	5 cut(s)	80, 169, 597, 902, 1156
Hpy8I	GTNNAC	2 cut(s)	329, 961
HpyAV	CCTTC	2 cut(s)	758, 1165
HpyCH4III	ACNGT	4 cut(s)	8, 622, 1030, 1325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 434, 1238
HpyF3I	CTNAG	7 cut(s)	106, 241, 332, 429, 475, 538, 606
Kpn2I	TCCGGA	1 cut(s)	596
Ksp22I	TGATCA	4 cut(s)	271, 297, 358, 694
LguI	GCTCTTC	1 cut(s)	885
LmnI	GCTCC	3 cut(s)	452, 569, 713
Lsp1109I	GCAGC	4 cut(s)	340, 928, 1021, 1123
LweI	GCATC	1 cut(s)	1127
MaeIII	GTNAC	3 cut(s)	665, 725, 1161
MboII	GAAGA	8 cut(s)	95, 521, 561, 728, 731, 744, 902, 1009
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	1 cut(s)	1008
MhlI	GDGCHC	3 cut(s)	107, 205, 338
MlyI	GAGTC	4 cut(s)	233, 464, 611, 1211
MnlI	CCTC	8 cut(s)	892, 898, 987, 1094, 1126, 1152, 1236, 1267
MroI	TCCGGA	1 cut(s)	596
MseI	TTAA	1 cut(s)	1005
MslI	CAYNNNNRTG	2 cut(s)	503, 1281
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	1095
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	1095
MwoI	GCNNNNNNNGC	3 cut(s)	253, 434, 1238
NlaIV	GGNNCC	3 cut(s)	112, 715, 1092
NmuCI	GTSAC	2 cut(s)	725, 1161
NspI	RCATGY	3 cut(s)	164, 251, 386
OliI	CACNNNNGTG	1 cut(s)	503
PaeI	GCATGC	2 cut(s)	164, 251
PagI	TCATGA	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	955
PciI	ACATGT	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	749, 1056
PkrI	GCNGC	5 cut(s)	355, 943, 946, 1036, 1138
PleI	GAGTC	4 cut(s)	233, 463, 610, 1210
PpsI	GAGTC	4 cut(s)	233, 463, 610, 1210
PpuMI	RGGWCCY	1 cut(s)	110
PscI	ACATGT	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	1093
PspGI	CCWGG	1 cut(s)	1093
PspN4I	GGNNCC	3 cut(s)	112, 715, 1092
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	1008
RsaI	GTAC	3 cut(s)	72, 387, 481
RsaNI	GTAC	3 cut(s)	71, 386, 480
RseI	CAYNNNNRTG	2 cut(s)	503, 1281
SacI	GAGCTC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	885
SaqAI	TTAA	1 cut(s)	1005
SatI	GCNGC	5 cut(s)	354, 942, 945, 1035, 1137
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	4 cut(s)	233, 464, 611, 1211
ScrFI	CCNGG	1 cut(s)	1095
SduI	GDGCHC	3 cut(s)	107, 205, 338
SfaNI	GCATC	1 cut(s)	1127
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	503, 1281
SmlI	CTYRAG	2 cut(s)	1148, 1156
SmoI	CTYRAG	2 cut(s)	1148, 1156
SphI	GCATGC	2 cut(s)	164, 251
SseBI	AGGCCT	1 cut(s)	955
SsiI	CCGC	1 cut(s)	944
SspI	AATATT	1 cut(s)	1222
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	1 cut(s)	1093
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	4 cut(s)	8, 622, 1030, 1325
TaqI	TCGA	1 cut(s)	101
TatI	WGTACW	2 cut(s)	70, 385
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	2 cut(s)	749, 1056
Tru1I	TTAA	1 cut(s)	1005
Tru9I	TTAA	1 cut(s)	1005
TscAI	CASTG	7 cut(s)	121, 249, 336, 343, 499, 1066, 1120
TseFI	GTSAC	2 cut(s)	725, 1161
TseI	GCWGC	4 cut(s)	353, 941, 1034, 1136
Tsp45I	GTSAC	2 cut(s)	725, 1161
TspDTI	ATGAA	7 cut(s)	112, 185, 203, 337, 392, 855, 935
TspGWI	ACGGA	2 cut(s)	439, 776
TspRI	CASTG	7 cut(s)	121, 249, 336, 343, 499, 1066, 1120
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	1098
XapI	RAATTY	3 cut(s)	522, 673, 1183
XceI	RCATGY	3 cut(s)	164, 251, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.