Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Reverse (-)

25866051 .. 25871382

Gene Structure 5332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGATAGTTTTGCTTGGGATAGCTCACACATTATCACAAACACATCCACCTTATGGAGCAACCATCATCATCAACATGATCTTGATCAAGAAAGCTTATTGATGTCCAGTAACTCAAGCTCCACTGTTTTAAATATTCCAATCCAAGATCATCAACTCCAACAAGTCCAAGAATCTCACATACTGATGAATTCAAATAACCAGAGTCCAGCGAGTAATACTGAGATGGCTCAACAACATTGGGGTGGTAAAAGTTTGGCCGCTGAGCAATTGTGTCAAGTCCCTTTTATCATCAGTAGGCCTTTTTCAATGAACTCACTGATAAACAGTGCTTTCGTGGTTGATGATCATCATCAAAACAAGGCTCGGCCAGCAGCAACGGCAACGTGTTCCATTGAGTCTCTAGATTGCTTGTTCTCTGCTACCAATAGCAACACTGCTGAAGACACTACATGTCTAGATCAAGATGATGCGATTAATTCTACAATTGCTCCAAATTGTCGAAGATCAAACTTGTGGAACTTTGGAACAGGCAGTACTACTACTGCAGTCTCATCCGAGTCTGAGACCACTAACAATGCCTCAAGACCAAACAAAGAGACTCAAAGTTTCAGCAAGAGATGCCGCAACGATGACCAAAGTGATCAGCTCAAGTTTTATGCAGAAAATTATAGTCAACACTTTGATCTTCTTCAAACAGATTCTTCTACAACTACTACAGAAGGTGGTGGGTTTAGGCTCATATCTGAAAACCCACCCAAGGCAAAGAAGCTCAAATCATCATCAGATCAGAAGTCCACCACTCCAAGCACAACCAACATCAACTTTCAACAGCCAACTTCATCATCACTATCAGGTTCCGCCACTGATCAAGAACCTGATCCAGAGGTCATTGCACAGATGAAGGAGATGATTTACCGTGCCGCGGCTTTCCGGCCAGTCAACTTGGGCATAGAGATGGTGGAGCGGCCCAAGAGGAAGAATGTGAAGATCTCGTCTGATCCACAGACGGTGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGGTTTTGCAGAAGCTGGTTCCTGGTGGAAGCAAGATGGATACTGCTTCCATGCTGGATGAGGCTGCAAATTACCTCAAGTTTCTCAGGTCGCAAGTCAAGGCTTTAGAGAATCTGGGCCAAAAGATCGATTCCATGAGTAATTGTCTTCCTCCTGCAAGCTTTGCTTTCTCTTTCAATCCTTCCTTTCCCATGCAAACACACCATGTCCCACTACACCTTCACCCTAATCATAATATCCATCAACCCCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

437

Amino Acids

48.43

Weight (kDa)

6.18

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	340 - 381	7.1e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	342 - 385	5.5e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccBSI	CCGCTC	1 cut(s)	967
AccII	CGCG	1 cut(s)	926
AciI	CCGC	6 cut(s)	261, 625, 861, 924, 926, 967
AclWI	GGATC	3 cut(s)	875, 995, 1046
AcoI	YGGCCR	3 cut(s)	258, 368, 935
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	3 cut(s)	54, 760, 925
AflIII	ACRYGT	2 cut(s)	386, 452
AgsI	TTSAA	5 cut(s)	195, 309, 695, 830, 1231
AjnI	CCWGG	1 cut(s)	1075
AluBI	AGCT	7 cut(s)	24, 96, 120, 649, 772, 1069, 1215
AluI	AGCT	7 cut(s)	24, 96, 120, 649, 772, 1069, 1215
Alw26I	GTCTC	4 cut(s)	405, 556, 560, 593
AlwI	GGATC	3 cut(s)	875, 995, 1046
AlwNI	CAGNNNCTG	1 cut(s)	1069
AoxI	GGCC	6 cut(s)	258, 299, 368, 935, 968, 1171
ApeKI	GCWGC	3 cut(s)	374, 1016, 1118
ApoI	RAATTY	1 cut(s)	190
AseI	ATTAAT	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	969, 1171
AsuHPI	GGTGA	1 cut(s)	1268
BbsI	GAAGAC	2 cut(s)	450, 1193
BbvI	GCAGC	3 cut(s)	386, 1003, 1105
BccI	CCATC	5 cut(s)	72, 220, 952, 1084, 1302
BceAI	ACGGC	1 cut(s)	396
BciT130I	CCWGG	1 cut(s)	1077
BciVI	GTATCC	1 cut(s)	1087
BclI	TGATCA	4 cut(s)	85, 346, 643, 868
BcoDI	GTCTC	4 cut(s)	405, 556, 560, 593
BfaI	CTAG	3 cut(s)	404, 458, 1309
BfmI	CTRYAG	2 cut(s)	546, 717
BfuI	GTATCC	1 cut(s)	1087
BglII	AGATCT	1 cut(s)	990
BisI	GCNGC	8 cut(s)	261, 375, 625, 924, 927, 968, 1017, 1119
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	8 cut(s)	262, 376, 626, 925, 928, 969, 1018, 1120
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	1 cut(s)	1077
BmgT120I	GGNCC	2 cut(s)	969, 1171
BmiI	GGNNCC	2 cut(s)	859, 1074
BmrFI	CCNGG	1 cut(s)	1077
BmsI	GCATC	2 cut(s)	460, 611
BpiI	GAAGAC	2 cut(s)	450, 1193
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	4 cut(s)	100, 568, 635, 1115
Bsa29I	ATCGAT	1 cut(s)	1182
BsaBI	GATNNNNATC	3 cut(s)	84, 348, 351
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	759, 924
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 475, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 760, 925
Bse1I	ACTGG	2 cut(s)	108, 938
Bse3DI	GCAATG	1 cut(s)	891
Bse8I	GATNNNNATC	3 cut(s)	84, 348, 351
BseBI	CCWGG	1 cut(s)	1077
BseCI	ATCGAT	1 cut(s)	1182
BseDI	CCNNGG	2 cut(s)	759, 924
BseGI	GGATG	3 cut(s)	44, 554, 1117
BseJI	GATNNNNATC	3 cut(s)	84, 348, 351
BseLI	CCNNNNNNNGG	3 cut(s)	54, 760, 925
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	4 cut(s)	213, 255, 555, 1153
BseNI	ACTGG	2 cut(s)	108, 938
BseXI	GCAGC	3 cut(s)	386, 1003, 1105
Bsh1236I	CGCG	1 cut(s)	926
BshFI	GGCC	6 cut(s)	260, 301, 370, 937, 970, 1173
BshVI	ATCGAT	1 cut(s)	1182
BsiSI	CCGG	1 cut(s)	934
BslFI	GGGAC	2 cut(s)	266, 1247
BslI	CCNNNNNNNGG	3 cut(s)	54, 760, 925
BsmAI	GTCTC	4 cut(s)	405, 556, 560, 593
BsmFI	GGGAC	2 cut(s)	266, 1247
BsnI	GGCC	6 cut(s)	260, 301, 370, 937, 970, 1173
Bso31I	GGTCTC	1 cut(s)	560
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	6 cut(s)	261, 625, 861, 924, 926, 967
BspANI	GGCC	6 cut(s)	260, 301, 370, 937, 970, 1173
BspCNI	CTCAG	4 cut(s)	214, 256, 556, 1152
BspDI	ATCGAT	1 cut(s)	1182
BspFNI	CGCG	1 cut(s)	926
BspLI	GGNNCC	2 cut(s)	859, 1074
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	3 cut(s)	875, 995, 1046
BspTNI	GGTCTC	1 cut(s)	560
BsrBI	CCGCTC	1 cut(s)	967
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	2 cut(s)	108, 938
BssECI	CCNNGG	2 cut(s)	759, 924
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	4 cut(s)	127, 329, 920, 1012
BstAPI	GCANNNNNTGC	2 cut(s)	621, 1217
BstC8I	GCNNGC	2 cut(s)	372, 1213
BstDEI	CTNAG	4 cut(s)	222, 264, 564, 1139
BstDSI	CCRYGG	1 cut(s)	924
BstF5I	GGATG	3 cut(s)	44, 554, 1117
BstFNI	CGCG	1 cut(s)	926
BstMAI	GTCTC	4 cut(s)	405, 556, 560, 593
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 380, 621, 1217
BstNI	CCWGG	1 cut(s)	1077
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	1075
BstSFI	CTRYAG	2 cut(s)	546, 717
BstUI	CGCG	1 cut(s)	926
BstV1I	GCAGC	3 cut(s)	386, 1003, 1105
BstV2I	GAAGAC	2 cut(s)	450, 1193
BstX2I	RGATCY	1 cut(s)	990
BstYI	RGATCY	1 cut(s)	990
Bsu15I	ATCGAT	1 cut(s)	1182
BsuI	GTATCC	1 cut(s)	1087
BsuRI	GGCC	6 cut(s)	260, 301, 370, 937, 970, 1173
BsuTUI	ATCGAT	1 cut(s)	1182
BtgI	CCRYGG	1 cut(s)	924
BtsCI	GGATG	3 cut(s)	44, 554, 1117
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	6 cut(s)	123, 317, 334, 435, 864, 1048
Cac8I	GCNNGC	2 cut(s)	372, 1213
CaiI	CAGNNNCTG	1 cut(s)	1069
Cfr13I	GGNCC	2 cut(s)	969, 1171
Cfr42I	CCGCGG	1 cut(s)	927
ClaI	ATCGAT	1 cut(s)	1182
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	6 cut(s)	77, 453, 1105, 1189, 1246, 1259
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	4 cut(s)	222, 264, 564, 1139
DraI	TTTAAA	1 cut(s)	132
EaeI	YGGCCR	3 cut(s)	258, 368, 935
EciI	GGCGGA	1 cut(s)	850
Eco130I	CCWWGG	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	1075
EcoT14I	CCWWGG	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	6 cut(s)	80, 456, 1108, 1192, 1249, 1262
FalI	AAGNNNNNCTT	2 cut(s)	1204, 1236
FaqI	GGGAC	2 cut(s)	266, 1247
FatI	CATG	6 cut(s)	76, 452, 1104, 1188, 1245, 1258
FbaI	TGATCA	4 cut(s)	85, 346, 643, 868
Fnu4HI	GCNGC	8 cut(s)	261, 375, 625, 924, 927, 968, 1017, 1119
FokI	GGATG	3 cut(s)	31, 541, 1124
Fsp4HI	GCNGC	8 cut(s)	261, 375, 625, 924, 927, 968, 1017, 1119
FspBI	CTAG	3 cut(s)	404, 458, 1309
GluI	GCNGC	8 cut(s)	261, 375, 625, 924, 927, 968, 1017, 1119
HaeIII	GGCC	6 cut(s)	260, 301, 370, 937, 970, 1173
HapII	CCGG	1 cut(s)	934
Hin1II	CATG	6 cut(s)	80, 456, 1108, 1192, 1249, 1262
HincII	GTYRAC	2 cut(s)	677, 943
HindII	GTYRAC	2 cut(s)	677, 943
HindIII	AAGCTT	2 cut(s)	94, 1213
HinfI	GANTC	8 cut(s)	173, 205, 398, 560, 601, 701, 1165, 1184
HpaII	CCGG	1 cut(s)	934
HphI	GGTGA	1 cut(s)	1268
Hpy166II	GTNNAC	3 cut(s)	677, 798, 943
Hpy188I	TCNGA	6 cut(s)	559, 565, 748, 787, 792, 1000
Hpy188III	TCNNGA	8 cut(s)	83, 89, 404, 458, 464, 585, 872, 884
Hpy8I	GTNNAC	3 cut(s)	677, 798, 943
HpyAV	CCTTC	4 cut(s)	716, 898, 1245, 1283
HpyCH4III	ACNGT	4 cut(s)	127, 329, 920, 1012
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	8 cut(s)	548, 662, 896, 1019, 1063, 1121, 1211, 1249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 380, 621, 1217
HpyF3I	CTNAG	4 cut(s)	222, 264, 564, 1139
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	6 cut(s)	80, 456, 1108, 1192, 1249, 1262
Ksp22I	TGATCA	4 cut(s)	85, 346, 643, 868
KspI	CCGCGG	1 cut(s)	927
LmnI	GCTCC	4 cut(s)	57, 125, 496, 964
Lsp1109I	GCAGC	3 cut(s)	386, 1003, 1105
LweI	GCATC	2 cut(s)	460, 611
MaeI	CTAG	3 cut(s)	404, 458, 1309
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	110
MbiI	CCGCTC	1 cut(s)	967
MboII	GAAGA	8 cut(s)	455, 516, 680, 683, 696, 991, 1000, 1193
MfeI	CAATTG	2 cut(s)	269, 486
MflI	RGATCY	1 cut(s)	990
MluCI	AATT	9 cut(s)	190, 269, 478, 486, 496, 667, 1050, 1123, 1195
MlyI	GAGTC	4 cut(s)	214, 407, 569, 595
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	8 cut(s)	592, 880, 969, 1023, 1029, 1108, 1139, 1215
MseI	TTAA	2 cut(s)	131, 477
MslI	CAYNNNNRTG	4 cut(s)	75, 185, 243, 956
MspA1I	CMGCKG	2 cut(s)	263, 926
MspI	CCGG	1 cut(s)	934
MspR9I	CCNGG	1 cut(s)	1077
MunI	CAATTG	2 cut(s)	269, 486
MvaI	CCWGG	1 cut(s)	1077
MvnI	CGCG	1 cut(s)	926
MwoI	GCNNNNNNNGC	4 cut(s)	371, 380, 621, 1217
NlaIII	CATG	6 cut(s)	80, 456, 1108, 1192, 1249, 1262
NlaIV	GGNNCC	2 cut(s)	859, 1074
NmeAIII	GCCGAG	1 cut(s)	346
NspI	RCATGY	1 cut(s)	456
PceI	AGGCCT	1 cut(s)	301
PciI	ACATGT	1 cut(s)	452
PfeI	GAWTC	4 cut(s)	173, 701, 1165, 1184
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	8 cut(s)	262, 376, 626, 925, 928, 969, 1018, 1120
PleI	GAGTC	4 cut(s)	213, 406, 568, 595
PpsI	GAGTC	4 cut(s)	213, 406, 568, 595
PscI	ACATGT	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	1075
PspN4I	GGNNCC	2 cut(s)	859, 1074
PspPI	GGNCC	2 cut(s)	969, 1171
PsrI	GAACNNNNNNTAC	2 cut(s)	520, 552
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	1069
PsuI	RGATCY	1 cut(s)	990
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	4 cut(s)	75, 185, 243, 956
SacII	CCGCGG	1 cut(s)	927
SaqAI	TTAA	2 cut(s)	131, 477
SatI	GCNGC	8 cut(s)	261, 375, 625, 924, 927, 968, 1017, 1119
Sau96I	GGNCC	2 cut(s)	969, 1171
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	4 cut(s)	214, 407, 569, 595
ScrFI	CCNGG	1 cut(s)	1077
SfaNI	GCATC	2 cut(s)	460, 611
SfcI	CTRYAG	2 cut(s)	546, 717
Sfr303I	CCGCGG	1 cut(s)	927
SgrBI	CCGCGG	1 cut(s)	927
SmiMI	CAYNNNNRTG	4 cut(s)	75, 185, 243, 956
SmlI	CTYRAG	4 cut(s)	115, 583, 650, 1130
SmoI	CTYRAG	4 cut(s)	115, 583, 650, 1130
Sse9I	AATT	9 cut(s)	190, 269, 478, 486, 496, 667, 1050, 1123, 1195
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	6 cut(s)	261, 625, 861, 924, 926, 967
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	3 cut(s)	404, 458, 1309
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	1075
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	4 cut(s)	127, 329, 920, 1012
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	502, 1182
TasI	AATT	9 cut(s)	190, 269, 478, 486, 496, 667, 1050, 1123, 1195
TatI	WGTACW	1 cut(s)	536
TauI	GCSGC	5 cut(s)	263, 627, 926, 929, 970
TfiI	GAWTC	4 cut(s)	173, 701, 1165, 1184
Tru1I	TTAA	2 cut(s)	131, 477
Tru9I	TTAA	2 cut(s)	131, 477
TscAI	CASTG	6 cut(s)	130, 324, 334, 442, 871, 1048
TseI	GCWGC	3 cut(s)	374, 1016, 1118
TspDTI	ATGAA	4 cut(s)	203, 326, 831, 917
TspRI	CASTG	6 cut(s)	130, 324, 334, 442, 871, 1048
Van91I	CCANNNNNTGG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	2 cut(s)	403, 457
XceI	RCATGY	1 cut(s)	456
XspI	CTAG	3 cut(s)	404, 458, 1309
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.