Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Reverse (-)

55489657 .. 55490067

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG408300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGGAGATGATTTACCACGCCGCGGCTTTCAGGCCAGTCAATTTGGGCATAGAGATGGTGGAGCGGCCCAAGAGGAAGAATGTGAAGATCTCGTCTGATCCACAGACGGTGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGGTTTTGCAGAAGCTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCTATGCTCGATGAGGCTGCAAATTACCTCAAGTTCCTCAGGTCACAAGTCAAGGCTTTAGAGAATTTGGGCCAAAAGATCGATTCCATGAGTAATTGTCTTCCTCCTACAAGCTTTGCTTTCTCTTTCAATCCTTCCTTTCCCATGCAGACCCATCATGTCCCACTCCACCTTAACCCTAATCATAATATCCATCAACCCCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

136

Amino Acids

15.49

Weight (kDa)

10.07

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	40 - 81	1.1e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	42 - 85	7.4e-11	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	24, 26, 67
AclWI	GGATC	2 cut(s)	95, 146
AcsI	RAATTY	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	2 cut(s)	169, 315
AluI	AGCT	2 cut(s)	169, 315
AlwI	GGATC	2 cut(s)	95, 146
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	3 cut(s)	35, 68, 271
ApeKI	GCWGC	2 cut(s)	116, 218
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	69, 271
AxyI	CCTNAGG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	103, 205
BccI	CCATC	4 cut(s)	52, 184, 363, 402
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	177
BfaI	CTAG	1 cut(s)	409
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	5 cut(s)	24, 27, 68, 117, 219
BlsI	GCNGC	5 cut(s)	25, 28, 69, 118, 220
Bme1390I	CCNGG	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	69, 271
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	38
Bse21I	CCTNAGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	103, 205
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	37, 70, 273
BshVI	ATCGAT	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	37, 70, 273
Bsp143I	GATC	4 cut(s)	90, 100, 138, 279
BspACI	CCGC	3 cut(s)	24, 26, 67
BspANI	GGCC	3 cut(s)	37, 70, 273
BspCNI	CTCAG	1 cut(s)	252
BspDI	ATCGAT	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	95, 146
BsrBI	CCGCTC	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	90, 100, 138, 279
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	4 cut(s)	93, 103, 141, 282
BstMBI	GATC	4 cut(s)	90, 100, 138, 279
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	103, 205
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	37, 70, 273
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	148, 195
CaiI	CAGNNNCTG	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	69, 271
Cfr42I	CCGCGG	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	282
CviAII	CATG	3 cut(s)	289, 346, 359
CviJI	RGCY	9 cut(s)	29, 37, 70, 116, 169, 218, 257, 273, 315
CviKI_1	RGCY	9 cut(s)	29, 37, 70, 116, 169, 218, 257, 273, 315
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	4 cut(s)	92, 102, 140, 281
DpnII	GATC	4 cut(s)	90, 100, 138, 279
Eco81I	CCTNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	175
FaeI	CATG	3 cut(s)	292, 349, 362
FaiI	YATR	6 cut(s)	53, 206, 290, 347, 360, 387
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	288, 345, 358
Fnu4HI	GCNGC	5 cut(s)	24, 27, 68, 117, 219
Fsp4HI	GCNGC	5 cut(s)	24, 27, 68, 117, 219
FspBI	CTAG	1 cut(s)	409
GluI	GCNGC	5 cut(s)	24, 27, 68, 117, 219
HaeIII	GGCC	3 cut(s)	37, 70, 273
Hin1II	CATG	3 cut(s)	292, 349, 362
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	119, 163, 221, 349
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	292, 349, 362
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	90, 100, 138, 279
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	19, 51, 155, 162, 189, 226
Lsp1109I	GCAGC	2 cut(s)	103, 205
MaeI	CTAG	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	4 cut(s)	92, 102, 140, 281
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	4 cut(s)	90, 100, 138, 279
MboII	GAAGA	3 cut(s)	91, 100, 293
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	5 cut(s)	43, 150, 223, 265, 295
MnlI	CCTC	7 cut(s)	69, 123, 129, 208, 239, 248, 315
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	26
NdeII	GATC	4 cut(s)	90, 100, 138, 279
NlaIII	CATG	3 cut(s)	292, 349, 362
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	5 cut(s)	25, 28, 69, 118, 220
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	69, 271
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	56
SacII	CCGCGG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	24, 27, 68, 117, 219
Sau3AI	GATC	4 cut(s)	90, 100, 138, 279
Sau96I	GGNCC	2 cut(s)	69, 271
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	5 cut(s)	171, 231, 245, 317, 375
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	5 cut(s)	43, 150, 223, 265, 295
SsiI	CCGC	3 cut(s)	24, 26, 67
SspMI	CTAG	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	210, 282
TasI	AATT	5 cut(s)	43, 150, 223, 265, 295
TauI	GCSGC	3 cut(s)	26, 29, 70
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	148, 202
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	2 cut(s)	116, 218
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	148, 202
XapI	RAATTY	1 cut(s)	265
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.