Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Reverse (-)

58866432 .. 58867640

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019939

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTCCAATAACTCGAGCTCCAGTGTTTTCAATATTCCAATCCAAGATCATCAACTCCAACAAGTCCAAGACTCTCACATAATGATGAAGTCAAATGTCCAAAGTCCACCGAGTAATGCTGAAATGGCTCAGCAACATTGGGGTGGTAAAAATTTGGCCGCTGAGCAATTGTGTCCGGCCCCTTTTATGATCAATAGGACTTATTCAATGAACTCACTGATCAGCAGTGCTTTCATGGCTGATGATCATCATGTCGAGGTTCGGCCAGCATCAACGGCAACATGTTCCATTGAGTCTCTGGATTGCTTGCTCTCTGCTACTAATAGCAACACTGCAGAAGACACTACATCTCTAAATCAAGATGATGCAATTAATTCTACGATTTTTCCAGATTGTAAAAGATCAAACTTATGGAACTTCGGAACAGGCAGTGCTACTACTGCAGTCTCATCCGGGGAGATTGAGACAGCTAACAACACCACAAGACCAAATAGAGAAACTCAAAGTTTCAACAAGAGAAGCCGCAACAATGACCAAAGTGATCCCCTCAAGTTTTATGCAGAAAATTATAGTCAACACTTTGATCTTCTTCAAACAGATTCTTCAACTACTACTACAGAAGGTGGTGGGTTTAGGCTCATCTCTGAAAACCCACCAAAGGCAAAGAAGCTCAAATCCTCATCAGATCAGAAGTCCACTGCTCCAAGCACAACCAACATCAACTTTCAACAGCCAACTTCATCATCACTATCAGGTTCCTCCACTGATCAAGAACCTGATCCAGAGGTCATTGCACAGATGAAGGAGATGATTTACCGCGCCGCGGCTTTCAGGCCAGTCAATTTGGGCATAGAGATGGTGGAGCGGCCCAAGAGGAAGAATGTGAAGATCTCGTCTGATCCACAGACGGTGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGGTTTTGCAGAAGCTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCTATGCTCGATGAGGCTGCAAATTACCTCAAGTTCCTCAGGTCACAAGTCAAGGCTTTAGAGAATTTGGGCCAAAAGATCGATTCCATGAGTAATTGTCTTCCTCCTACAAGCTTTGCTTTCTCTTTCAATCCTTCCTTTCCCATGCAGACCCACCATGTCCCACTCCACCTTAACCCTAATCATAATATCCATCAAGCCCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

403

Amino Acids

44.44

Weight (kDa)

6.6

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	306 - 347	6.4e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	308 - 351	4.9e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	865
AccII	CGCG	2 cut(s)	819, 824
AciI	CCGC	6 cut(s)	159, 523, 817, 822, 824, 865
AclWI	GGATC	4 cut(s)	536, 773, 893, 944
AcoI	YGGCCR	2 cut(s)	156, 263
AcsI	RAATTY	2 cut(s)	151, 1063
AfiI	CCNNNNNNNGG	2 cut(s)	658, 823
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	7 cut(s)	31, 207, 511, 593, 606, 728, 1129
AjnI	CCWGG	1 cut(s)	973
AluBI	AGCT	5 cut(s)	18, 470, 670, 967, 1113
AluI	AGCT	5 cut(s)	18, 470, 670, 967, 1113
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	300, 451, 458
AlwI	GGATC	4 cut(s)	536, 773, 893, 944
AlwNI	CAGNNNCTG	1 cut(s)	967
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	6 cut(s)	156, 177, 263, 833, 866, 1069
ApeKI	GCWGC	2 cut(s)	914, 1016
ApoI	RAATTY	2 cut(s)	151, 1063
AseI	ATTAAT	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	3 cut(s)	178, 867, 1069
AsuC2I	CCSGG	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	13
AxyI	CCTNAGG	1 cut(s)	1037
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	345, 1091
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	901, 1003
BccI	CCATC	3 cut(s)	850, 982, 1200
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	998, 1032
BciT130I	CCWGG	1 cut(s)	975
BclI	TGATCA	4 cut(s)	189, 219, 244, 766
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	300, 451, 458
BfaI	CTAG	1 cut(s)	1207
BfmI	CTRYAG	3 cut(s)	333, 441, 615
BglII	AGATCT	1 cut(s)	888
BisI	GCNGC	7 cut(s)	159, 523, 822, 825, 866, 915, 1017
BlpI	GCTNAGC	2 cut(s)	129, 162
BlsI	GCNGC	7 cut(s)	160, 524, 823, 826, 867, 916, 1018
Bme1390I	CCNGG	2 cut(s)	454, 975
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	178, 867, 1069
BmiI	GGNNCC	3 cut(s)	180, 757, 972
BmrFI	CCNGG	2 cut(s)	454, 975
BmsI	GCATC	2 cut(s)	278, 355
BpiI	GAAGAC	2 cut(s)	345, 1091
BpmI	CTGGAG	1 cut(s)	4
Bpu1102I	GCTNAGC	2 cut(s)	129, 162
BpuEI	CTTGAG	2 cut(s)	533, 1013
BpuMI	CCSGG	1 cut(s)	454
Bsa29I	ATCGAT	1 cut(s)	1080
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	453, 822
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	658, 823
Bse1I	ACTGG	2 cut(s)	21, 836
Bse21I	CCTNAGG	1 cut(s)	1037
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	975
BseCI	ATCGAT	1 cut(s)	1080
BseDI	CCNNGG	2 cut(s)	453, 822
BseGI	GGATG	1 cut(s)	449
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	658, 823
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	143, 153, 1051
BseNI	ACTGG	2 cut(s)	21, 836
BseXI	GCAGC	2 cut(s)	901, 1003
Bsh1236I	CGCG	2 cut(s)	819, 824
BshFI	GGCC	6 cut(s)	158, 179, 265, 835, 868, 1071
BshVI	ATCGAT	1 cut(s)	1080
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	176, 453
BslFI	GGGAC	1 cut(s)	1145
BslI	CCNNNNNNNGG	2 cut(s)	658, 823
BsmAI	GTCTC	3 cut(s)	300, 451, 458
BsmFI	GGGAC	1 cut(s)	1145
BsnI	GGCC	6 cut(s)	158, 179, 265, 835, 868, 1071
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp1720I	GCTNAGC	2 cut(s)	129, 162
BspACI	CCGC	6 cut(s)	159, 523, 817, 822, 824, 865
BspANI	GGCC	6 cut(s)	158, 179, 265, 835, 868, 1071
BspCNI	CTCAG	3 cut(s)	142, 154, 1050
BspDI	ATCGAT	1 cut(s)	1080
BspFNI	CGCG	2 cut(s)	819, 824
BspLI	GGNNCC	3 cut(s)	180, 757, 972
BspMAI	CTGCAG	2 cut(s)	337, 445
BspPI	GGATC	4 cut(s)	536, 773, 893, 944
BsrBI	CCGCTC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	21, 836
BssECI	CCNNGG	2 cut(s)	453, 822
Bst2UI	CCWGG	1 cut(s)	975
Bst4CI	ACNGT	1 cut(s)	910
BstC8I	GCNNGC	2 cut(s)	267, 308
BstDEI	CTNAG	3 cut(s)	129, 162, 1037
BstDSI	CCRYGG	1 cut(s)	822
BstF5I	GGATG	1 cut(s)	449
BstFNI	CGCG	2 cut(s)	819, 824
BstHHI	GCGC	1 cut(s)	821
BstMAI	GTCTC	3 cut(s)	300, 451, 458
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 236, 275, 440
BstNI	CCWGG	1 cut(s)	975
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	452, 973
BstSFI	CTRYAG	3 cut(s)	333, 441, 615
BstUI	CGCG	2 cut(s)	819, 824
BstV1I	GCAGC	2 cut(s)	901, 1003
BstV2I	GAAGAC	2 cut(s)	345, 1091
BstX2I	RGATCY	1 cut(s)	888
BstYI	RGATCY	1 cut(s)	888
Bsu15I	ATCGAT	1 cut(s)	1080
Bsu36I	CCTNAGG	1 cut(s)	1037
BsuRI	GGCC	6 cut(s)	158, 179, 265, 835, 868, 1071
BsuTUI	ATCGAT	1 cut(s)	1080
BtgI	CCRYGG	1 cut(s)	822
BtsCI	GGATG	1 cut(s)	449
BtsI	GCAGTG	5 cut(s)	232, 330, 436, 696, 993
BtsIMutI	CAGTG	9 cut(s)	28, 215, 232, 330, 436, 696, 762, 946, 993
Cac8I	GCNNGC	2 cut(s)	267, 308
CaiI	CAGNNNCTG	1 cut(s)	967
CfoI	GCGC	1 cut(s)	821
Cfr13I	GGNCC	3 cut(s)	178, 867, 1069
Cfr42I	CCGCGG	1 cut(s)	825
ClaI	ATCGAT	1 cut(s)	1080
CviAII	CATG	6 cut(s)	235, 251, 282, 1087, 1144, 1157
DdeI	CTNAG	3 cut(s)	129, 162, 1037
EaeI	YGGCCR	2 cut(s)	156, 263
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	1037
Eco88I	CYCGRG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	973
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	6 cut(s)	238, 254, 285, 1090, 1147, 1160
FalI	AAGNNNNNCTT	2 cut(s)	1102, 1134
FaqI	GGGAC	1 cut(s)	1145
FatI	CATG	6 cut(s)	234, 250, 281, 1086, 1143, 1156
FbaI	TGATCA	4 cut(s)	189, 219, 244, 766
Fnu4HI	GCNGC	7 cut(s)	159, 523, 822, 825, 866, 915, 1017
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	7 cut(s)	159, 523, 822, 825, 866, 915, 1017
FspBI	CTAG	1 cut(s)	1207
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	7 cut(s)	159, 523, 822, 825, 866, 915, 1017
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	6 cut(s)	158, 179, 265, 835, 868, 1071
HapII	CCGG	2 cut(s)	176, 453
HhaI	GCGC	1 cut(s)	821
Hin1II	CATG	6 cut(s)	238, 254, 285, 1090, 1147, 1160
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HincII	GTYRAC	1 cut(s)	575
HindII	GTYRAC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	1111
HinfI	GANTC	4 cut(s)	71, 293, 599, 1082
HpaII	CCGG	2 cut(s)	176, 453
Hpy166II	GTNNAC	3 cut(s)	107, 575, 696
Hpy188I	TCNGA	5 cut(s)	422, 646, 685, 690, 898
Hpy188III	TCNNGA	5 cut(s)	299, 359, 389, 770, 782
Hpy8I	GTNNAC	3 cut(s)	107, 575, 696
HpyAV	CCTTC	3 cut(s)	614, 796, 1143
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4V	TGCA	9 cut(s)	335, 368, 443, 560, 794, 917, 961, 1019, 1147
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 236, 275, 440
HpyF3I	CTNAG	3 cut(s)	129, 162, 1037
Hsp92II	CATG	6 cut(s)	238, 254, 285, 1090, 1147, 1160
HspAI	GCGC	1 cut(s)	819
Ksp22I	TGATCA	4 cut(s)	189, 219, 244, 766
KspI	CCGCGG	1 cut(s)	825
LmnI	GCTCC	3 cut(s)	23, 706, 862
Lsp1109I	GCAGC	2 cut(s)	901, 1003
LweI	GCATC	2 cut(s)	278, 355
MaeI	CTAG	1 cut(s)	1207
MaeIII	GTNAC	1 cut(s)	1041
MbiI	CCGCTC	1 cut(s)	865
MboII	GAAGA	7 cut(s)	350, 578, 581, 594, 889, 898, 1091
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	888
MhlI	GDGCHC	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	65, 302
MmeI	TCCRAC	1 cut(s)	82
MseI	TTAA	2 cut(s)	372, 1173
MslI	CAYNNNNRTG	3 cut(s)	83, 141, 854
MspA1I	CMGCKG	2 cut(s)	161, 824
MspI	CCGG	2 cut(s)	176, 453
MspR9I	CCNGG	2 cut(s)	454, 975
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	975
MvnI	CGCG	2 cut(s)	819, 824
MwoI	GCNNNNNNNGC	4 cut(s)	125, 236, 275, 440
NciI	CCSGG	1 cut(s)	454
NlaIII	CATG	6 cut(s)	238, 254, 285, 1090, 1147, 1160
NlaIV	GGNNCC	3 cut(s)	180, 757, 972
NmuCI	GTSAC	1 cut(s)	1041
NspI	RCATGY	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	13
PciI	ACATGT	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	599, 1082
PkrI	GCNGC	7 cut(s)	160, 524, 823, 826, 867, 916, 1018
PleI	GAGTC	2 cut(s)	65, 301
PpsI	GAGTC	2 cut(s)	65, 301
PscI	ACATGT	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	973
PspGI	CCWGG	1 cut(s)	973
PspN4I	GGNNCC	3 cut(s)	180, 757, 972
PspPI	GGNCC	3 cut(s)	178, 867, 1069
PspXI	VCTCGAGB	1 cut(s)	13
PstI	CTGCAG	2 cut(s)	337, 445
PstNI	CAGNNNCTG	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	888
RseI	CAYNNNNRTG	3 cut(s)	83, 141, 854
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	825
SaqAI	TTAA	2 cut(s)	372, 1173
SatI	GCNGC	7 cut(s)	159, 523, 822, 825, 866, 915, 1017
Sau96I	GGNCC	3 cut(s)	178, 867, 1069
SchI	GAGTC	2 cut(s)	65, 302
ScrFI	CCNGG	2 cut(s)	454, 975
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	2 cut(s)	278, 355
SfcI	CTRYAG	3 cut(s)	333, 441, 615
Sfr274I	CTCGAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	825
SgrBI	CCGCGG	1 cut(s)	825
SlaI	CTCGAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	3 cut(s)	83, 141, 854
SmlI	CTYRAG	3 cut(s)	13, 548, 1028
SmoI	CTYRAG	3 cut(s)	13, 548, 1028
SsiI	CCGC	6 cut(s)	159, 523, 817, 822, 824, 865
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	1207
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	452, 973
TaaI	ACNGT	1 cut(s)	910
TaqI	TCGA	4 cut(s)	14, 255, 1008, 1080
TauI	GCSGC	5 cut(s)	161, 525, 824, 827, 868
TfiI	GAWTC	2 cut(s)	599, 1082
Tru1I	TTAA	2 cut(s)	372, 1173
Tru9I	TTAA	2 cut(s)	372, 1173
TscAI	CASTG	9 cut(s)	28, 222, 232, 337, 436, 703, 769, 946, 1000
TseFI	GTSAC	1 cut(s)	1041
TseI	GCWGC	2 cut(s)	914, 1016
Tsp45I	GTSAC	1 cut(s)	1041
TspDTI	ATGAA	5 cut(s)	101, 223, 224, 729, 815
TspRI	CASTG	9 cut(s)	28, 222, 232, 337, 436, 703, 769, 946, 1000
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	151, 1063
XceI	RCATGY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	13
XspI	CTAG	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.