Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007757

Physical Location & Seq

Genomic Coordinates Reverse (-)

62516383 .. 62517187

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG421200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATAGTTTTGGTTGGGATAGCTCACACATGATAACAAACACATCCACCTTATGGAGCAACCATCATCAACATGATCTTGATCAAGAAAGCTTATTGATGTCCAATAACTCGAGCTCCAGTGTTTTCAATATTCCAATCCAAGATCATCAACTCCAACAAGTCCAAGAATCTCACAAAATGATGAAGTCAAATACCCATAGTCCACCGAGTAATGCTGAAATGGCTCAGCAACATTGGGGTGGTAAAAATTTGGCCGCTGAGCAATTGTGTCAGGCCCCTTTTATGATCAATAGGACTTATTCAATGAACTCACTGATCAGCAGTGTTTTCATGGCTGATGATCATCATGTCGAGACTCGGCCAGCATCAACGGCAACATGTTCCATTGAGTCTCTGGATTGCTTGCTCTCTGCTACTAATAGCAACACTGCAGAAGACACTACATCTCTAAATAAAGATGATGCAATTAATTCTACGATTTTTCCGGATTGTCGAAGATCAAACTTATGGAACTTCGGAACAGGCAGTGCTACTACTGCAGTCTCATCCGGGGAGACTGAGACCGCTAACAACACCTCAAGACCAAATAGAGAAACTCAAAGTTTCAATAAGAGAAGCCGCAACAATGACCAAAGCTCATCTCTGAAAACCCACCAAAGGCAAAGAAGCTCAAATCCTCATCAGATCAGAAGTCCACTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

235

Amino Acids

26.2

Weight (kDa)

6.02

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21330
fragaria_vesca	FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760 FvH4_6g32760
malus_domestica	MD09G1198300.v1.1 MD17G1179100.v1.1
prunus_persica	Prupe.3G054400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141851
rosa_laevigata	RLG00000019939
rosa_multiflora	Rmu_co8433201.1_g000001 Rmu_sc0001554.1_g000001 Rmu_sc0002928.1_g000020
rosa_roxburghii	Rroxscaffold_2G00103760 Rroxscaffold_4G00331720
rosa_rugosa	Rorug02G0369000
rosa_samantha	Rh2AG421100 Rh2AG421200 Rh2BG431200 Rh2CG408300 Rh2CG408400 Rh2DG441300
rosa_wichuraiana	Rw2G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	3 cut(s)	258, 567, 622
AcoI	YGGCCR	2 cut(s)	255, 362
AcsI	RAATTY	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	54, 660
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	130, 306, 610
AluBI	AGCT	5 cut(s)	24, 93, 117, 639, 672
AluI	AGCT	5 cut(s)	24, 93, 117, 639, 672
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	5 cut(s)	350, 399, 550, 551, 557
Ama87I	CYCGRG	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	3 cut(s)	255, 276, 362
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	390
BclI	TGATCA	4 cut(s)	82, 288, 318, 343
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BfmI	CTRYAG	2 cut(s)	432, 540
BisI	GCNGC	2 cut(s)	258, 622
BlpI	GCTNAGC	2 cut(s)	228, 261
BlsI	GCNGC	2 cut(s)	259, 623
Bme1390I	CCNGG	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	2 cut(s)	377, 454
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	103
Bpu1102I	GCTNAGC	2 cut(s)	228, 261
BpuEI	CTTGAG	1 cut(s)	565
BpuMI	CCSGG	1 cut(s)	553
BsaBI	GATNNNNATC	2 cut(s)	81, 345
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 660
Bse1I	ACTGG	1 cut(s)	120
Bse8I	GATNNNNATC	2 cut(s)	81, 345
BseAI	TCCGGA	1 cut(s)	487
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	44, 548
BseJI	GATNNNNATC	2 cut(s)	81, 345
BseLI	CCNNNNNNNGG	2 cut(s)	54, 660
BseMII	CTCAG	3 cut(s)	242, 252, 552
BseNI	ACTGG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	257, 278, 364
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	488, 552
BslI	CCNNNNNNNGG	2 cut(s)	54, 660
BsmAI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BsnI	GGCC	3 cut(s)	257, 278, 364
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	487
Bsp143I	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
Bsp1720I	GCTNAGC	2 cut(s)	228, 261
BspACI	CCGC	3 cut(s)	258, 567, 622
BspANI	GGCC	3 cut(s)	257, 278, 364
BspCNI	CTCAG	3 cut(s)	241, 253, 553
BspEI	TCCGGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	2 cut(s)	436, 544
BspTNI	GGTCTC	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
BstC8I	GCNNGC	2 cut(s)	366, 407
BstDEI	CTNAG	3 cut(s)	228, 261, 561
BstF5I	GGATG	2 cut(s)	44, 548
BstKTI	GATC	8 cut(s)	79, 85, 148, 291, 321, 346, 503, 690
BstMAI	GTCTC	5 cut(s)	350, 399, 550, 551, 557
BstMBI	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 374, 539
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	2 cut(s)	432, 540
BstV2I	GAAGAC	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	257, 278, 364
BtsCI	GGATG	2 cut(s)	44, 548
BtsI	GCAGTG	4 cut(s)	331, 429, 535, 698
BtsIMutI	CAGTG	6 cut(s)	127, 314, 331, 429, 535, 698
Cac8I	GCNNGC	2 cut(s)	366, 407
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	5 cut(s)	31, 74, 334, 350, 381
DdeI	CTNAG	3 cut(s)	228, 261, 561
DpnI	GATC	8 cut(s)	78, 84, 147, 290, 320, 345, 502, 689
DpnII	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
EaeI	YGGCCR	2 cut(s)	255, 362
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	557
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	5 cut(s)	34, 77, 337, 353, 384
FaiI	YATR	9 cut(s)	32, 55, 75, 201, 287, 335, 351, 382, 511
FatI	CATG	5 cut(s)	30, 73, 333, 349, 380
FbaI	TGATCA	4 cut(s)	82, 288, 318, 343
Fnu4HI	GCNGC	2 cut(s)	258, 622
FokI	GGATG	2 cut(s)	31, 535
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	258, 622
GluI	GCNGC	2 cut(s)	258, 622
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	257, 278, 364
HapII	CCGG	2 cut(s)	488, 552
Hin1II	CATG	5 cut(s)	34, 77, 337, 353, 384
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	3 cut(s)	170, 358, 392
HpaII	CCGG	2 cut(s)	488, 552
Hpy166II	GTNNAC	2 cut(s)	206, 698
Hpy188I	TCNGA	4 cut(s)	521, 648, 687, 692
Hpy188III	TCNNGA	6 cut(s)	80, 86, 355, 398, 488, 582
Hpy8I	GTNNAC	2 cut(s)	206, 698
HpyCH4V	TGCA	3 cut(s)	434, 467, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 374, 539
HpyF3I	CTNAG	3 cut(s)	228, 261, 561
Hsp92II	CATG	5 cut(s)	34, 77, 337, 353, 384
Kpn2I	TCCGGA	1 cut(s)	487
Ksp22I	TGATCA	4 cut(s)	82, 288, 318, 343
Kzo9I	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
LmnI	GCTCC	2 cut(s)	57, 122
LpnPI	CCDG	7 cut(s)	133, 260, 378, 383, 501, 510, 565
LweI	GCATC	2 cut(s)	377, 454
MalI	GATC	8 cut(s)	78, 84, 147, 290, 320, 345, 502, 689
MboI	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
MboII	GAAGA	2 cut(s)	449, 510
MfeI	CAATTG	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	4 cut(s)	250, 266, 468, 472
MlyI	GAGTC	2 cut(s)	352, 401
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	589, 690
MroI	TCCGGA	1 cut(s)	487
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	72, 240
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	488, 552
MspR9I	CCNGG	1 cut(s)	553
MunI	CAATTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	224, 374, 539
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
NlaIII	CATG	5 cut(s)	34, 77, 337, 353, 384
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	340
NspI	RCATGY	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	259, 623
PleI	GAGTC	2 cut(s)	352, 400
PpsI	GAGTC	2 cut(s)	352, 400
PscI	ACATGT	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	112
PstI	CTGCAG	2 cut(s)	436, 544
RseI	CAYNNNNRTG	2 cut(s)	72, 240
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	258, 622
Sau3AI	GATC	8 cut(s)	76, 82, 145, 288, 318, 343, 500, 687
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	352, 401
ScrFI	CCNGG	1 cut(s)	553
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	7 cut(s)	26, 53, 95, 119, 581, 641, 674
SfaNI	GCATC	2 cut(s)	377, 454
SfcI	CTRYAG	2 cut(s)	432, 540
Sfr274I	CTCGAG	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	72, 240
SmlI	CTYRAG	2 cut(s)	112, 580
SmoI	CTYRAG	2 cut(s)	112, 580
Sse9I	AATT	4 cut(s)	250, 266, 468, 472
SsiI	CCGC	3 cut(s)	258, 567, 622
SspI	AATATT	1 cut(s)	133
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	551
TaqI	TCGA	3 cut(s)	113, 354, 496
TasI	AATT	4 cut(s)	250, 266, 468, 472
TauI	GCSGC	2 cut(s)	260, 624
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	6 cut(s)	127, 321, 331, 436, 535, 705
TspDTI	ATGAA	3 cut(s)	200, 322, 323
TspRI	CASTG	6 cut(s)	127, 321, 331, 436, 535, 705
Van91I	CCANNNNNTGG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.