Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Forward (+)

7531353 .. 7534600

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGTGGTACAGAGTTAGATGAGCCTGGAAAGTTAAAACGTGCTGTCATTGATGCTTCTGCTGGTGGTGTTGCTGGTGCGATTTCACGTATGGTTACCTCTCCCCTTGATGTTATCAAGATTAGATTTCAGGTTCAGTTGGAGCCTACAGCTACATGGGCTCTGAAAGATTCTCAGCTGAAACCGAAGTACAATGGTTTGTTTCGAACAACGAAGGATATCTTTAGAGAGGAAGGTTTATCGGGTTTCTGGCGTGGAAATGTTCCAGCTTTACTTATGGTTGTGCCTTATACATCCATACAATTTGCAGTCTTACATAAGGTGAAGTCTTTTGCCGCTGGTTCATCAAAGGCCGAAAATCATGCTCAACTGAGCCCTTATCTTTCTTACATCAGTGGGGCACTAGCAGGGTGTGCAGCAACAGTTGGATCGTATCCGTTTGACCTATTGCGGACTGTATTGGCGTCCCAGGGTGAGCCAAAGGTGTATCCAAATATGAGGTCAGCATTTCTGAGTATAGTGCAAACTCGTGGAATCAAAGGGTTGTATGCAGGATTGTCCCCTACTCTGATCGAGATCATTCCTTATGCTGGTCTGCAGTTTGGCACCTATGACACATTTAAACGCTGGAGTATGGTATATAATAAGCGATACCGATCTTCTTCATCAAGCTCAACGAATCCAAGTGATAGTCTTTCTAGCTTTCAGCTTTTCCTTTGCGGTTTAGCTTCGGGCACTGTTTCTAAACTAGTCTGTCATCCGCTTGATGTTGTCAAGAAAAGATTCCAGGTCGAAGGTCTGCAACGTCACCCAAAATATGGAGCCCGAGTAGAGCTGAATGCTTACAAGAACATGTTTGACGGTTTAGGGCAGATATTAAGATCTGAAGGTTGGCACGGGCTTTATAAAGGCATTGTTCCATCAACCATTAAAGCTGCACCTGCTGGTGCTGTAACATTTGTGGCCTATGAACTTGCATCCGATTGGTTTGAGGCAAATTTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

335

Amino Acids

36.56

Weight (kDa)

9.56

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	16 - 112	8.2e-23	Mitochondrial carrier protein
Mito_carr	PF00153	123 - 211	3e-22	Mitochondrial carrier protein
Mito_carr	PF00153	232 - 331	1.3e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	906
AarI	CACCTGC	1 cut(s)	949
Acc36I	ACCTGC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	818
AciI	CCGC	4 cut(s)	336, 451, 720, 761
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	997
AcuI	CTGAAG	1 cut(s)	906
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	10, 191
AfiI	CCNNNNNNNGG	2 cut(s)	590, 818
AflIII	ACRYGT	1 cut(s)	852
AhlI	ACTAGT	1 cut(s)	748
AjnI	CCWGG	3 cut(s)	25, 468, 786
AluBI	AGCT	9 cut(s)	152, 178, 269, 672, 702, 709, 728, 835, 935
AluI	AGCT	9 cut(s)	152, 178, 269, 672, 702, 709, 728, 835, 935
AlwI	GGATC	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	825
AoxI	GGCC	2 cut(s)	351, 963
ApeKI	GCWGC	2 cut(s)	416, 935
ApoI	RAATTY	1 cut(s)	997
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
Asp700I	GAANNNNTTC	1 cut(s)	782
AsuHPI	GGTGA	3 cut(s)	334, 485, 800
AsuII	TTCGAA	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	825
BaeGI	GKGCMC	2 cut(s)	403, 737
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	3 cut(s)	163, 377, 826
BauI	CACGAG	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	428, 922
BccI	CCATC	1 cut(s)	928
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	3 cut(s)	27, 470, 788
BciVI	GTATCC	2 cut(s)	444, 498
BcuI	ACTAGT	1 cut(s)	748
BfaI	CTAG	3 cut(s)	404, 699, 749
BfmI	CTRYAG	2 cut(s)	147, 596
BfuAI	ACCTGC	1 cut(s)	949
BfuI	GTATCC	2 cut(s)	444, 498
BglII	AGATCT	1 cut(s)	881
BisI	GCNGC	3 cut(s)	336, 417, 936
BlsI	GCNGC	3 cut(s)	337, 418, 937
Bme1390I	CCNGG	3 cut(s)	27, 470, 788
BmeT110I	CYCGRG	1 cut(s)	825
BmiI	GGNNCC	3 cut(s)	144, 607, 823
BmrFI	CCNGG	3 cut(s)	27, 470, 788
BmsI	GCATC	2 cut(s)	43, 986
BpmI	CTGGAG	1 cut(s)	649
Bpu14I	TTCGAA	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	2 cut(s)	575, 655
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	468, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 818
Bse8I	GATNNNNATC	2 cut(s)	575, 655
BseBI	CCWGG	3 cut(s)	27, 470, 788
BseDI	CCNNGG	2 cut(s)	468, 469
BseGI	GGATG	3 cut(s)	293, 757, 977
BseJI	GATNNNNATC	2 cut(s)	575, 655
BseLI	CCNNNNNNNGG	2 cut(s)	590, 818
BseMII	CTCAG	3 cut(s)	188, 362, 503
BseSI	GKGCMC	2 cut(s)	403, 737
BseXI	GCAGC	2 cut(s)	428, 922
BsgI	GTGCAG	2 cut(s)	435, 921
BshFI	GGCC	2 cut(s)	353, 965
BshNI	GGYRCC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	825
BslFI	GGGAC	2 cut(s)	451, 544
BslI	CCNNNNNNNGG	2 cut(s)	590, 818
BsmFI	GGGAC	2 cut(s)	451, 544
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	2 cut(s)	353, 965
BsoBI	CYCGRG	1 cut(s)	825
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	5 cut(s)	163, 377, 403, 737, 826
Bsp143I	GATC	5 cut(s)	428, 570, 576, 656, 881
BspACI	CCGC	4 cut(s)	336, 451, 720, 761
BspANI	GGCC	2 cut(s)	353, 965
BspCNI	CTCAG	3 cut(s)	187, 363, 504
BspLI	GGNNCC	3 cut(s)	144, 607, 823
BspMAI	CTGCAG	1 cut(s)	600
BspMI	ACCTGC	1 cut(s)	949
BspPI	GGATC	1 cut(s)	436
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	468, 469
BssMI	GATC	5 cut(s)	428, 570, 576, 656, 881
BssNI	GRCGYC	1 cut(s)	464
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	27, 470, 788
Bst4CI	ACNGT	4 cut(s)	424, 457, 739, 863
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	174, 371, 512
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	293, 757, 977
BstKTI	GATC	5 cut(s)	431, 573, 579, 659, 884
BstMBI	GATC	5 cut(s)	428, 570, 576, 656, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 413, 941
BstNI	CCWGG	3 cut(s)	27, 470, 788
BstNSI	RCATGY	1 cut(s)	856
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	3 cut(s)	25, 468, 786
BstSFI	CTRYAG	2 cut(s)	147, 596
BstSLI	GKGCMC	2 cut(s)	403, 737
BstV1I	GCAGC	2 cut(s)	428, 922
BstX2I	RGATCY	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	881
BsuI	GTATCC	2 cut(s)	444, 498
BsuRI	GGCC	2 cut(s)	353, 965
BtsCI	GGATG	3 cut(s)	293, 757, 977
BtsIMutI	CAGTG	2 cut(s)	400, 735
BveI	ACCTGC	1 cut(s)	949
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	9, 190
CviAII	CATG	3 cut(s)	156, 362, 853
CviQI	GTAC	2 cut(s)	9, 190
DdeI	CTNAG	3 cut(s)	174, 371, 512
DpnI	GATC	5 cut(s)	430, 572, 578, 658, 883
DpnII	GATC	5 cut(s)	428, 570, 576, 656, 881
DraI	TTTAAA	1 cut(s)	622
Eco24I	GRGCYC	3 cut(s)	163, 377, 826
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	906
Eco88I	CYCGRG	1 cut(s)	825
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
EcoRII	CCWGG	3 cut(s)	25, 468, 786
EcoRV	GATATC	1 cut(s)	220
EcoT38I	GRGCYC	3 cut(s)	163, 377, 826
FaeI	CATG	3 cut(s)	159, 365, 856
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	2 cut(s)	451, 544
FatI	CATG	3 cut(s)	155, 361, 852
Fnu4HI	GCNGC	3 cut(s)	336, 417, 936
FokI	GGATG	3 cut(s)	280, 744, 964
FriOI	GRGCYC	3 cut(s)	163, 377, 826
Fsp4HI	GCNGC	3 cut(s)	336, 417, 936
FspBI	CTAG	3 cut(s)	404, 699, 749
GluI	GCNGC	3 cut(s)	336, 417, 936
GsuI	CTGGAG	1 cut(s)	649
HaeIII	GGCC	2 cut(s)	353, 965
HgaI	GACGC	1 cut(s)	453
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	3 cut(s)	159, 365, 856
HinfI	GANTC	4 cut(s)	170, 534, 679, 783
HphI	GGTGA	3 cut(s)	334, 485, 800
Hpy188I	TCNGA	5 cut(s)	165, 513, 570, 886, 982
Hpy188III	TCNNGA	3 cut(s)	118, 574, 775
HpyAV	CCTTC	4 cut(s)	208, 227, 788, 881
HpyCH4III	ACNGT	4 cut(s)	424, 457, 739, 863
HpyCH4IV	ACGT	3 cut(s)	40, 88, 805
HpyCH4V	TGCA	8 cut(s)	308, 416, 523, 551, 598, 802, 938, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 413, 941
HpyF3I	CTNAG	3 cut(s)	174, 371, 512
HpySE526I	ACGT	3 cut(s)	40, 88, 805
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	3 cut(s)	159, 365, 856
Kzo9I	GATC	5 cut(s)	428, 570, 576, 656, 881
LmnI	GCTCC	2 cut(s)	142, 821
Lsp1109I	GCAGC	2 cut(s)	428, 922
LweI	GCATC	2 cut(s)	43, 986
MaeI	CTAG	3 cut(s)	404, 699, 749
MaeII	ACGT	3 cut(s)	40, 88, 805
MaeIII	GTNAC	3 cut(s)	94, 806, 952
MalI	GATC	5 cut(s)	430, 572, 578, 658, 883
MboI	GATC	5 cut(s)	428, 570, 576, 656, 881
MboII	GAAGA	2 cut(s)	651, 654
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	5 cut(s)	163, 377, 403, 737, 826
MluCI	AATT	2 cut(s)	302, 997
MmeI	TCCRAC	2 cut(s)	120, 406
MnlI	CCTC	4 cut(s)	109, 223, 492, 985
MroXI	GAANNNNTTC	1 cut(s)	782
MseI	TTAA	4 cut(s)	35, 621, 878, 930
MspA1I	CMGCKG	2 cut(s)	178, 338
MspR9I	CCNGG	3 cut(s)	27, 470, 788
Mva1269I	GAATGC	1 cut(s)	844
MvaI	CCWGG	3 cut(s)	27, 470, 788
MwoI	GCNNNNNNNGC	3 cut(s)	158, 413, 941
NdeII	GATC	5 cut(s)	428, 570, 576, 656, 881
NlaIII	CATG	3 cut(s)	159, 365, 856
NlaIV	GGNNCC	3 cut(s)	144, 607, 823
NmuCI	GTSAC	1 cut(s)	806
NspI	RCATGY	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	949
PasI	CCCWGGG	1 cut(s)	469
PciI	ACATGT	1 cut(s)	852
PctI	GAATGC	1 cut(s)	844
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	4 cut(s)	170, 534, 679, 783
PflMI	CCANNNNNTGG	1 cut(s)	818
PkrI	GCNGC	3 cut(s)	337, 418, 937
Ppu21I	YACGTR	1 cut(s)	89
PscI	ACATGT	1 cut(s)	852
PsiI	TTATAA	1 cut(s)	906
Psp6I	CCWGG	3 cut(s)	25, 468, 786
PspEI	GGTNACC	1 cut(s)	94
PspGI	CCWGG	3 cut(s)	25, 468, 786
PspN4I	GGNNCC	3 cut(s)	144, 607, 823
PstI	CTGCAG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	10, 191
RsaNI	GTAC	2 cut(s)	9, 190
SaqAI	TTAA	4 cut(s)	35, 621, 878, 930
SatI	GCNGC	3 cut(s)	336, 417, 936
Sau3AI	GATC	5 cut(s)	428, 570, 576, 656, 881
ScrFI	CCNGG	3 cut(s)	27, 470, 788
SduI	GDGCHC	5 cut(s)	163, 377, 403, 737, 826
SfaNI	GCATC	2 cut(s)	43, 986
SfcI	CTRYAG	2 cut(s)	147, 596
SfuI	TTCGAA	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	748
Sse9I	AATT	2 cut(s)	302, 997
SsiI	CCGC	4 cut(s)	336, 451, 720, 761
SspMI	CTAG	3 cut(s)	404, 699, 749
StyD4I	CCNGG	3 cut(s)	25, 468, 786
TaaI	ACNGT	4 cut(s)	424, 457, 739, 863
TaiI	ACGT	3 cut(s)	43, 91, 808
TaqI	TCGA	3 cut(s)	205, 573, 792
TasI	AATT	2 cut(s)	302, 997
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	4 cut(s)	170, 534, 679, 783
Tru1I	TTAA	4 cut(s)	35, 621, 878, 930
Tru9I	TTAA	4 cut(s)	35, 621, 878, 930
TscAI	CASTG	2 cut(s)	400, 742
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	2 cut(s)	416, 935
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	3 cut(s)	333, 654, 984
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	2 cut(s)	400, 742
Van91I	CCANNNNNTGG	1 cut(s)	818
XapI	RAATTY	1 cut(s)	997
XceI	RCATGY	1 cut(s)	856
XmnI	GAANNNNTTC	1 cut(s)	782
XspI	CTAG	3 cut(s)	404, 699, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.