Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

55396668 .. 55400862

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGGTCTGCATTTGTCGATATAGTTAAAACTCGTGGATTTCGAGGATTGTATGCTGGATTATCACCAACACTGGTTGAGATTGTTCCTTATGCAGGCTTGGAATTTGGTACCTATGACACATTTAAGCGCTGGACCATGATGTTGAACCAATTTAGATTGTCTAGTGCAGACTTATACAGTACAGATAATAGTCTCACAAGCTTTCAGCTTTTCCTCTGTGGTCTGGCTGCTGGGACATGTGCCAAACTTGTCTGTCATCCATTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCACCATGCCTACAGCAATATGGTTGATGCTTTGCGACGAATAGTGCAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTCCCATCAACTGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

157

Amino Acids

17.44

Weight (kDa)

9.63

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	2 - 46	7.3e-12	Mitochondrial carrier protein
Mito_carr	PF00153	66 - 156	5.1e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	2 cut(s)	110, 309
AccB7I	CCANNNNNTGG	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	112, 184
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	95, 320
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	148, 296
AluBI	AGCT	4 cut(s)	204, 211, 437, 471
AluI	AGCT	4 cut(s)	204, 211, 437, 471
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	230, 437
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	2 cut(s)	110, 309
BanII	GRGCYC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	217, 424
BccI	CCATC	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	302, 346
BfoI	RGCGCY	1 cut(s)	133
BisI	GCNGC	2 cut(s)	231, 438
BlsI	GCNGC	2 cut(s)	232, 439
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	112, 311
BmsI	GCATC	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 320
Bse1I	ACTGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	95, 320
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	217, 424
BseYI	CCCAGC	2 cut(s)	233, 393
BsgI	GTGCAG	3 cut(s)	189, 401, 471
BshNI	GGYRCC	2 cut(s)	110, 309
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	250, 404
BslI	CCNNNNNNNGG	2 cut(s)	95, 320
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	250, 404
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	328, 339
BspLI	GGNNCC	2 cut(s)	112, 311
BspT107I	GGYRCC	2 cut(s)	110, 309
BsrI	ACTGG	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	182, 430
BstC8I	GCNNGC	2 cut(s)	97, 469
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	243
BstSFI	CTRYAG	2 cut(s)	302, 346
BstV1I	GCAGC	2 cut(s)	217, 424
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	71, 459
Cac8I	GCNNGC	2 cut(s)	97, 469
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	111, 183
CviAII	CATG	3 cut(s)	139, 240, 341
CviJI	RGCY	9 cut(s)	99, 204, 211, 230, 326, 393, 398, 437, 471
CviKI_1	RGCY	9 cut(s)	99, 204, 211, 230, 326, 393, 398, 437, 471
CviQI	GTAC	2 cut(s)	111, 183
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	328
FaeI	CATG	3 cut(s)	142, 243, 344
FaqI	GGGAC	2 cut(s)	250, 404
FatI	CATG	3 cut(s)	138, 239, 340
Fnu4HI	GCNGC	2 cut(s)	231, 438
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	2 cut(s)	231, 438
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	231, 438
GsaI	CCCAGC	2 cut(s)	237, 397
HaeII	RGCGCY	1 cut(s)	133
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	142, 243, 344
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	277, 289
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	290, 383
HpyCH4III	ACNGT	2 cut(s)	182, 430
HpyCH4V	TGCA	5 cut(s)	11, 95, 170, 382, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	142, 243, 344
HspAI	GCGC	1 cut(s)	130
KpnI	GGTACC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	2 cut(s)	217, 424
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	328, 339
MluCI	AATT	2 cut(s)	104, 152
MnlI	CCTC	3 cut(s)	38, 227, 300
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	27, 126
MwoI	GCNNNNNNNGC	1 cut(s)	443
NlaIII	CATG	3 cut(s)	142, 243, 344
NlaIV	GGNNCC	2 cut(s)	112, 311
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	327
PciI	ACATGT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	232, 439
PscI	ACATGT	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	408
PspFI	CCCAGC	2 cut(s)	233, 393
PspN4I	GGNNCC	2 cut(s)	112, 311
PspPI	GGNCC	1 cut(s)	135
PspXI	VCTCGAGB	1 cut(s)	327
RsaI	GTAC	2 cut(s)	112, 184
RsaNI	GTAC	2 cut(s)	111, 183
SaqAI	TTAA	2 cut(s)	27, 126
SatI	GCNGC	2 cut(s)	231, 438
Sau96I	GGNCC	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	328, 339
SetI	ASST	6 cut(s)	8, 116, 206, 213, 439, 473
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	2 cut(s)	302, 346
Sfr274I	CTCGAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	104, 152
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	182, 430
TaqI	TCGA	3 cut(s)	18, 43, 328
TasI	AATT	2 cut(s)	104, 152
TatI	WGTACW	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	27, 126
Tru9I	TTAA	2 cut(s)	27, 126
TscAI	CASTG	2 cut(s)	78, 459
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	2 cut(s)	230, 437
Tsp45I	GTSAC	1 cut(s)	454
TspRI	CASTG	2 cut(s)	78, 459
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.