Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

44140618 .. 44158327

Gene Structure 17710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG234500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTCCAATTGGAGCCTACATCTTCATGGGCTTTGGTTCGTCGGAATTTGACTGGGCCATCAAAATATACCGGGATGTTTCAAGCCACAAAGGATATTTTTAAAGAGGAAGGCTTACCGGGTTTTTGGCGAGGCAATGTTCCAGCTCTACTTATGGTTATGCCGTACACCGCAATACAGTTTACTGTACTACACAAGTTGAAGACTTTTGCCGCTGGTTCTTCCAAGACAGAGGATCATGCTCATTTAAGTCCTTACTTGTCCTACGTCAGTGGAGCATTAGCAGGTTGTGCGGCTACTGTTGGATCATACCCGTTTGATCTTCTTAGAACCTTGCTAGCTTCACAGGGTGAACCTAAGGTGTATCCAACTATGAGGTCTGCATTTGTCGATATAGTTAAAACTCGTGGATTTCGAGGATTGTATGCTGGATTGTCACCAACACTGGTTGAGATTGTTCCTTATGCAGGCTTGCAGTTTGGTACCTATGACACATTTAAGCGCTGGACCGTGATGTTGAACCAGTTTAGATCGTCTAGTCCGGACTTATACAGTACAGATAATAGTCCCACAAGCTTCCAGCTTTTCCTTTGTGGTCTGGCTGCCGGGACATGTGCCAAACTTGTCTGTCATCCACTTGATGTGGTAAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAATAGAGCACCGTGCCTACAGCAATATGGTTGATGCTTTGCGACGAATAGTGCAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATTGTCCCATCAACGGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCTTATGAATATACATCCGACTGGTTAGAGTCCAGAATAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

293

Amino Acids

32.48

Weight (kDa)

9.48

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	19 - 71	2.8e-12	Mitochondrial carrier protein
Mito_carr	PF00153	82 - 170	7.2e-23	Mitochondrial carrier protein
Mito_carr	PF00153	191 - 289	1.1e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
Acc36I	ACCTGC	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	2 cut(s)	482, 681
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	3 cut(s)	171, 213, 293
AclWI	GGATC	2 cut(s)	243, 313
AcsI	RAATTY	1 cut(s)	46
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	4 cut(s)	167, 189, 484, 556
AfeI	AGCGCT	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	467, 692, 799
AflIII	ACRYGT	1 cut(s)	611
AgsI	TTSAA	4 cut(s)	83, 202, 520, 668
AluBI	AGCT	5 cut(s)	146, 341, 576, 583, 809
AluI	AGCT	5 cut(s)	146, 341, 576, 583, 809
Alw21I	GWGCWC	1 cut(s)	711
AlwI	GGATC	2 cut(s)	243, 313
Aor13HI	TCCGGA	1 cut(s)	541
Aor51HI	AGCGCT	1 cut(s)	503
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	602, 809
ApoI	RAATTY	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	656
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	4, 56, 507
AsuC2I	CCSGG	3 cut(s)	73, 120, 607
AsuHPI	GGTGA	2 cut(s)	362, 429
AsuNHI	GCTAGC	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	4, 507
AxyI	CCTNAGG	1 cut(s)	357
BanI	GGYRCC	2 cut(s)	482, 681
BanII	GRGCYC	1 cut(s)	700
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	589, 796
BccI	CCATC	2 cut(s)	67, 802
BceAI	ACGGC	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	375
BcnI	CCSGG	3 cut(s)	73, 120, 607
BfaI	CTAG	2 cut(s)	338, 537
BfmI	CTRYAG	2 cut(s)	674, 718
BfoI	RGCGCY	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	4 cut(s)	213, 294, 603, 810
BlsI	GCNGC	4 cut(s)	214, 295, 604, 811
Bme1390I	CCNGG	3 cut(s)	73, 120, 607
Bme18I	GGWCC	2 cut(s)	4, 507
BmgT120I	GGNCC	3 cut(s)	4, 56, 507
BmiI	GGNNCC	3 cut(s)	15, 484, 683
BmrFI	CCNGG	3 cut(s)	73, 120, 607
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	724
BmtI	GCTAGC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	209
BpuMI	CCSGG	3 cut(s)	73, 120, 607
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 692, 799
Bse1I	ACTGG	4 cut(s)	58, 450, 523, 863
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	541
BseGI	GGATG	3 cut(s)	81, 631, 851
BseLI	CCNNNNNNNGG	3 cut(s)	467, 692, 799
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	4 cut(s)	58, 450, 523, 863
BseXI	GCAGC	2 cut(s)	589, 796
BseYI	CCCAGC	1 cut(s)	765
BsgI	GTGCAG	2 cut(s)	773, 843
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	2 cut(s)	482, 681
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	4 cut(s)	72, 119, 542, 606
BslFI	GGGAC	3 cut(s)	552, 622, 776
BslI	CCNNNNNNNGG	3 cut(s)	467, 692, 799
BsmFI	GGGAC	3 cut(s)	552, 622, 776
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	700, 711
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	4 cut(s)	235, 305, 319, 530
BspACI	CCGC	3 cut(s)	171, 213, 293
BspANI	GGCC	1 cut(s)	58
BspEI	TCCGGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	15, 484, 683
BspMI	ACCTGC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	243, 313
BspT107I	GGYRCC	2 cut(s)	482, 681
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	4 cut(s)	58, 450, 523, 863
BssMI	GATC	4 cut(s)	235, 305, 319, 530
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	7 cut(s)	180, 187, 301, 511, 554, 713, 802
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	339, 469, 473
BstDEI	CTNAG	2 cut(s)	326, 357
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	3 cut(s)	81, 631, 851
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	4 cut(s)	238, 308, 322, 533
BstMBI	GATC	4 cut(s)	235, 305, 319, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 815
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	3 cut(s)	71, 118, 605
BstSFI	CTRYAG	2 cut(s)	674, 718
BstV1I	GCAGC	2 cut(s)	589, 796
BstV2I	GAAGAC	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	81, 631, 851
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	3 cut(s)	277, 443, 831
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	3 cut(s)	339, 469, 473
CfoI	GCGC	1 cut(s)	504
Cfr13I	GGNCC	3 cut(s)	4, 56, 507
Csp6I	GTAC	4 cut(s)	166, 188, 483, 555
CviAII	CATG	3 cut(s)	27, 239, 612
CviQI	GTAC	4 cut(s)	166, 188, 483, 555
DdeI	CTNAG	2 cut(s)	326, 357
DpnI	GATC	4 cut(s)	237, 307, 321, 532
DpnII	GATC	4 cut(s)	235, 305, 319, 530
DraI	TTTAAA	1 cut(s)	103
DraIII	CACNNNGTG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	700
Eco47I	GGWCC	2 cut(s)	4, 507
Eco47III	AGCGCT	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	700
FaeI	CATG	3 cut(s)	30, 242, 615
FaqI	GGGAC	3 cut(s)	552, 622, 776
FatI	CATG	3 cut(s)	26, 238, 611
Fnu4HI	GCNGC	4 cut(s)	213, 294, 603, 810
FokI	GGATG	3 cut(s)	88, 618, 838
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	4 cut(s)	213, 294, 603, 810
FspBI	CTAG	2 cut(s)	338, 537
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	4 cut(s)	213, 294, 603, 810
GsaI	CCCAGC	1 cut(s)	769
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	4 cut(s)	72, 119, 542, 606
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	3 cut(s)	30, 242, 615
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	2 cut(s)	657, 866
HpaII	CCGG	4 cut(s)	72, 119, 542, 606
HphI	GGTGA	2 cut(s)	362, 429
Hpy166II	GTNNAC	3 cut(s)	168, 183, 353
Hpy188I	TCNGA	2 cut(s)	45, 856
Hpy188III	TCNNGA	3 cut(s)	542, 661, 870
Hpy8I	GTNNAC	3 cut(s)	168, 183, 353
Hpy99I	CGWCG	2 cut(s)	45, 747
HpyAV	CCTTC	3 cut(s)	104, 662, 755
HpyCH4III	ACNGT	7 cut(s)	180, 187, 301, 511, 554, 713, 802
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	5 cut(s)	383, 467, 475, 754, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 815
HpyF3I	CTNAG	2 cut(s)	326, 357
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	30, 242, 615
HspAI	GCGC	1 cut(s)	502
Kpn2I	TCCGGA	1 cut(s)	541
KpnI	GGTACC	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	235, 305, 319, 530
LmnI	GCTCC	3 cut(s)	13, 275, 817
Lsp1109I	GCAGC	2 cut(s)	589, 796
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	2 cut(s)	338, 537
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	435, 826
MalI	GATC	4 cut(s)	237, 307, 321, 532
MboI	GATC	4 cut(s)	235, 305, 319, 530
MboII	GAAGA	4 cut(s)	15, 213, 214, 314
MfeI	CAATTG	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	700, 711
MluCI	AATT	3 cut(s)	8, 46, 786
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	4 cut(s)	23, 283, 392, 879
MnlI	CCTC	6 cut(s)	100, 125, 226, 369, 410, 672
MroI	TCCGGA	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	4 cut(s)	102, 248, 399, 498
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	4 cut(s)	72, 119, 542, 606
MspR9I	CCNGG	3 cut(s)	73, 120, 607
MunI	CAATTG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	290, 815
NciI	CCSGG	3 cut(s)	73, 120, 607
NdeII	GATC	4 cut(s)	235, 305, 319, 530
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	30, 242, 615
NlaIV	GGNNCC	3 cut(s)	15, 484, 683
NmuCI	GTSAC	2 cut(s)	435, 826
NspI	RCATGY	1 cut(s)	615
PciI	ACATGT	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	657
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	4 cut(s)	214, 295, 604, 811
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
PscI	ACATGT	1 cut(s)	611
PsiI	TTATAA	1 cut(s)	780
PspFI	CCCAGC	1 cut(s)	765
PspN4I	GGNNCC	3 cut(s)	15, 484, 683
PspPI	GGNCC	3 cut(s)	4, 56, 507
RsaI	GTAC	4 cut(s)	167, 189, 484, 556
RsaNI	GTAC	4 cut(s)	166, 188, 483, 555
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	4 cut(s)	102, 248, 399, 498
SatI	GCNGC	4 cut(s)	213, 294, 603, 810
Sau3AI	GATC	4 cut(s)	235, 305, 319, 530
Sau96I	GGNCC	3 cut(s)	4, 56, 507
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	3 cut(s)	73, 120, 607
SduI	GDGCHC	2 cut(s)	700, 711
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	2 cut(s)	674, 718
SinI	GGWCC	2 cut(s)	4, 507
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	3 cut(s)	8, 46, 786
SsiI	CCGC	3 cut(s)	171, 213, 293
SspMI	CTAG	2 cut(s)	338, 537
StyD4I	CCNGG	3 cut(s)	71, 118, 605
TaaI	ACNGT	7 cut(s)	180, 187, 301, 511, 554, 713, 802
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	390, 415, 700
TasI	AATT	3 cut(s)	8, 46, 786
TatI	WGTACW	2 cut(s)	187, 554
TauI	GCSGC	2 cut(s)	215, 296
TfiI	GAWTC	1 cut(s)	657
Tru1I	TTAA	4 cut(s)	102, 248, 399, 498
Tru9I	TTAA	4 cut(s)	102, 248, 399, 498
TscAI	CASTG	3 cut(s)	277, 450, 831
TseFI	GTSAC	2 cut(s)	435, 826
TseI	GCWGC	2 cut(s)	602, 809
Tsp45I	GTSAC	2 cut(s)	435, 826
TspDTI	ATGAA	2 cut(s)	15, 858
TspRI	CASTG	3 cut(s)	277, 450, 831
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	4, 507
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	2 cut(s)	338, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.