MD16G1171300.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
14380192 .. 14384045
3854 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1171300.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGGCGGCGCTTTCTCTCTCCTCCATTGTCCCACCTGCCCTCTCCAGGTCGGTGATATATCTGCTTCAGCTTTGTTCGCGAGGGGGATTTCTTTTGGCAATGGAAGAGAAGGGGCAGCTCAAGCGAGCCGTCATTGATACAACGGCAGGTTTAATCGCCGGCGGAATATCGCGAACGGTTACTTCGCCGCTAGATGTTATTAAAATTAGATTCCAGGTTCAACTCGAGCCCACGACGTCATGGGCTTTGGTTCGAAGAAATTTGTCTGAACCATCAAAATATACTGGGATGTTTCAAGCAACAAGGGATATCTTCAGAGAGGAAGGCTTACGGGGTTTTTGGCGTGGAAATGTCCCAGCTTTACTTATGGTTATGCCGTATACTGCGATACAATTTACGGTGTTACACAAGTTGAAAACATTTGCTGCTGGTTCTTCCAAAACAGAGGATCACATTCATTTGAGCCCCTATTTGTCTTACGTCAGCGGAGCATTAGCGGGTTGTGCAGCTACTGTCGGCTCATATCCATTTGATCTTCTAAGAACCTTATTAGCTTCACAGGGCGAACCTAAGGTGTATCCAAATATGAGGTCTGCGTTGGTTGAAATAGTTAAAAATCGTGGCTTTCGAGGGTTGTATGCTGGACTGTCGCCAACACTTGTTGAGATTATACCCTATGCAGGCTTGCAATTTGGTACCTATGACACGTTTAAGCGCTGGACCATGGCGTGGAACCGGTACAGATCCTCTAATATAAACCCGCACGGTAGAGAAGATGGTCTCTCGAGCTTTCAGCTTTTCCTCTGTGGTATAGCAGCCGGGACATGTGCCAAACTTGTCTGTCATCCACTTGATGTGGTCAAGAAAAGATTCCAGGTTGAAGGACTACAGAGGCACCCAAGATATGGGAAACCAGTAGAGCACCGTGCTTATAGCAACATGTATGACGCCTTGCGAAGAATATTGCAGATGGAGGGCTGGGCTGGTCTCTATAAGGGAATAGTCCCATCAACCGTCAAAGCTGCACCTGCCGGTGCAGTGACATTTGTGGCATATGAATATACATCAGATTGGTTAGAGTCCAGATTGACTTGA

Protein Analysis

365

Amino Acids

40.37

Weight (kDa)

9.68

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 44 - 142 1.6e-23 Mitochondrial carrier protein
Mito_carr PF00153 154 - 241 1.1e-22 Mitochondrial carrier protein
Mito_carr PF00153 261 - 360 4.2e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 43, 1036
AatII GACGTC 1 cut(s) 239
Acc36I ACCTGC 3 cut(s) 43, 137, 1036
Acc65I GGTACC 1 cut(s) 695
AccB1I GGYRCC 2 cut(s) 695, 894
AccB7I CCANNNNNTGG 2 cut(s) 729, 905
AccI GTMKAC 1 cut(s) 380
AccII CGCG 2 cut(s) 79, 172
AciI CCGC 6 cut(s) 5, 162, 188, 486, 497, 761
AclWI GGATC 2 cut(s) 456, 738
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 50, 298
AcyI GRCGYC 2 cut(s) 236, 948
AfaI GTAC 2 cut(s) 697, 740
AfeI AGCGCT 1 cut(s) 716
AfiI CCNNNNNNNGG 4 cut(s) 45, 680, 729, 905
AflIII ACRYGT 3 cut(s) 705, 824, 939
AgeI ACCGGT 1 cut(s) 735
AgsI TTSAA 5 cut(s) 221, 296, 415, 605, 881
AjnI CCWGG 3 cut(s) 44, 213, 873
AluBI AGCT 8 cut(s) 70, 118, 359, 509, 554, 789, 796, 1022
AluI AGCT 8 cut(s) 70, 118, 359, 509, 554, 789, 796, 1022
Alw21I GWGCWC 1 cut(s) 924
Alw26I GTCTC 2 cut(s) 785, 992
AlwI GGATC 2 cut(s) 456, 738
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 2 cut(s) 224, 784
Aor51HI AGCGCT 1 cut(s) 716
ApeKI GCWGC 5 cut(s) 115, 425, 506, 815, 1022
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AsiGI ACCGGT 1 cut(s) 735
Asp700I GAANNNNTTC 1 cut(s) 869
Asp718I GGTACC 1 cut(s) 695
AspLEI GCGC 2 cut(s) 10, 717
AspS9I GGNCC 1 cut(s) 720
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 253
AvaI CYCGRG 2 cut(s) 224, 784
AvaII GGWCC 1 cut(s) 720
AxyI CCTNAGG 1 cut(s) 570
BanI GGYRCC 2 cut(s) 695, 894
BanII GRGCYC 2 cut(s) 231, 467
Bbv12I GWGCWC 1 cut(s) 924
BbvI GCAGC 5 cut(s) 127, 412, 518, 827, 1009
BccI CCATC 4 cut(s) 280, 770, 964, 1015
BceAI ACGGC 3 cut(s) 113, 159, 361
BciT130I CCWGG 3 cut(s) 46, 215, 875
BciVI GTATCC 1 cut(s) 588
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 785, 992
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 887
BfoI RGCGCY 2 cut(s) 11, 718
BfuAI ACCTGC 3 cut(s) 43, 137, 1036
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 7 cut(s) 6, 116, 188, 426, 507, 816, 1023
BlsI GCNGC 7 cut(s) 7, 117, 189, 427, 508, 817, 1024
Bme1390I CCNGG 4 cut(s) 46, 215, 820, 875
Bme18I GGWCC 1 cut(s) 720
BmeT110I CYCGRG 2 cut(s) 224, 784
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 3 cut(s) 697, 734, 896
BmrFI CCNGG 4 cut(s) 46, 215, 820, 875
BmrI ACTGGG 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 28
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 820
BsaHI GRCGYC 2 cut(s) 236, 948
BsaI GGTCTC 2 cut(s) 785, 992
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 735
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 680, 729, 905
Bse118I RCCGGY 3 cut(s) 158, 735, 1031
Bse1I ACTGG 2 cut(s) 289, 914
Bse21I CCTNAGG 1 cut(s) 570
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 3 cut(s) 46, 215, 875
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 2 cut(s) 294, 844
BseLI CCNNNNNNNGG 4 cut(s) 45, 680, 729, 905
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 289, 914
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 5 cut(s) 127, 412, 518, 827, 1009
BseYI CCCAGC 2 cut(s) 355, 978
BsgI GTGCAG 3 cut(s) 525, 1008, 1056
Bsh1236I CGCG 2 cut(s) 79, 172
BshNI GGYRCC 2 cut(s) 695, 894
BshTI ACCGGT 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 924
BsiHKCI CYCGRG 2 cut(s) 224, 784
BsiSI CCGG 4 cut(s) 159, 736, 819, 1032
BslFI GGGAC 4 cut(s) 14, 338, 835, 989
BslI CCNNNNNNNGG 4 cut(s) 45, 680, 729, 905
BsmAI GTCTC 2 cut(s) 785, 992
BsmFI GGGAC 4 cut(s) 14, 338, 835, 989
Bso31I GGTCTC 2 cut(s) 785, 992
BsoBI CYCGRG 2 cut(s) 224, 784
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 3 cut(s) 231, 467, 924
Bsp143I GATC 3 cut(s) 448, 532, 743
Bsp19I CCATGG 1 cut(s) 723
Bsp68I TCGCGA 2 cut(s) 79, 172
BspACI CCGC 6 cut(s) 5, 162, 188, 486, 497, 761
BspFNI CGCG 2 cut(s) 79, 172
BspLI GGNNCC 3 cut(s) 697, 734, 896
BspMI ACCTGC 3 cut(s) 43, 137, 1036
BspPI GGATC 2 cut(s) 456, 738
BspT104I TTCGAA 1 cut(s) 253
BspT107I GGYRCC 2 cut(s) 695, 894
BspTNI GGTCTC 2 cut(s) 785, 992
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 3 cut(s) 158, 735, 1031
BsrI ACTGG 2 cut(s) 289, 914
BssAI RCCGGY 3 cut(s) 158, 735, 1031
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 3 cut(s) 448, 532, 743
BssNAI GTATAC 1 cut(s) 381
BssNI GRCGYC 2 cut(s) 236, 948
BssT1I CCWWGG 1 cut(s) 723
Bst1107I GTATAC 1 cut(s) 381
Bst2UI CCWGG 3 cut(s) 46, 215, 875
Bst4CI ACNGT 7 cut(s) 178, 400, 514, 648, 767, 926, 1015
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 2 cut(s) 236, 948
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 4 cut(s) 126, 160, 682, 686
BstDEI CTNAG 2 cut(s) 539, 570
BstDSI CCRYGG 1 cut(s) 723
BstF5I GGATG 2 cut(s) 294, 844
BstFNI CGCG 2 cut(s) 79, 172
BstH2I RGCGCY 2 cut(s) 11, 718
BstHHI GCGC 2 cut(s) 10, 717
BstKTI GATC 3 cut(s) 451, 535, 746
BstMAI GTCTC 2 cut(s) 785, 992
BstMBI GATC 3 cut(s) 448, 532, 743
BstMWI GCNNNNNNNGC 4 cut(s) 76, 121, 503, 1028
BstNI CCWGG 3 cut(s) 46, 215, 875
BstNSI RCATGY 2 cut(s) 828, 943
BstSCI CCNGG 4 cut(s) 44, 213, 818, 873
BstSFI CTRYAG 1 cut(s) 887
BstUI CGCG 2 cut(s) 79, 172
BstV1I GCAGC 5 cut(s) 127, 412, 518, 827, 1009
BstX2I RGATCY 1 cut(s) 743
BstYI RGATCY 1 cut(s) 743
BstZ17I GTATAC 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 570
BsuI GTATCC 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 723
BtsCI GGATG 2 cut(s) 294, 844
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 1 cut(s) 1044
BtuMI TCGCGA 2 cut(s) 79, 172
BveI ACCTGC 3 cut(s) 43, 137, 1036
Cac8I GCNNGC 4 cut(s) 126, 160, 682, 686
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 2 cut(s) 10, 717
Cfr10I RCCGGY 3 cut(s) 158, 735, 1031
Cfr13I GGNCC 1 cut(s) 720
CseI GACGC 1 cut(s) 956
Csp6I GTAC 2 cut(s) 696, 739
CspAI ACCGGT 1 cut(s) 735
CviAII CATG 4 cut(s) 240, 724, 825, 940
CviQI GTAC 2 cut(s) 696, 739
DdeI CTNAG 2 cut(s) 539, 570
DpnI GATC 3 cut(s) 450, 534, 745
DpnII GATC 3 cut(s) 448, 532, 743
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 723
Eco24I GRGCYC 2 cut(s) 231, 467
Eco31I GGTCTC 2 cut(s) 785, 992
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 720
Eco47III AGCGCT 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 50, 298
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 2 cut(s) 224, 784
EcoRII CCWGG 3 cut(s) 44, 213, 873
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 723
EcoT38I GRGCYC 2 cut(s) 231, 467
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 4 cut(s) 243, 727, 828, 943
FaqI GGGAC 4 cut(s) 14, 338, 835, 989
FatI CATG 4 cut(s) 239, 723, 824, 939
FauI CCCGC 2 cut(s) 490, 768
FauNDI CATATG 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 7 cut(s) 6, 116, 188, 426, 507, 816, 1023
FokI GGATG 2 cut(s) 301, 831
FriOI GRGCYC 2 cut(s) 231, 467
Fsp4HI GCNGC 7 cut(s) 6, 116, 188, 426, 507, 816, 1023
FspBI CTAG 1 cut(s) 191
GlaI GCGC 2 cut(s) 9, 716
GluI GCNGC 7 cut(s) 6, 116, 188, 426, 507, 816, 1023
GsaI CCCAGC 2 cut(s) 359, 982
GsuI CTGGAG 1 cut(s) 28
HaeII RGCGCY 2 cut(s) 11, 718
HapII CCGG 4 cut(s) 159, 736, 819, 1032
HgaI GACGC 1 cut(s) 956
HhaI GCGC 2 cut(s) 10, 717
Hin1I GRCGYC 2 cut(s) 236, 948
Hin1II CATG 4 cut(s) 243, 727, 828, 943
Hin6I GCGC 2 cut(s) 8, 715
HinP1I GCGC 2 cut(s) 8, 715
HinfI GANTC 3 cut(s) 210, 870, 1079
HpaII CCGG 4 cut(s) 159, 736, 819, 1032
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 268, 317, 1069
Hpy188III TCNNGA 5 cut(s) 78, 171, 784, 862, 1083
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 103, 317, 875
HpyCH4III ACNGT 7 cut(s) 178, 400, 514, 648, 767, 926, 1015
HpyCH4IV ACGT 3 cut(s) 236, 480, 707
HpyCH4V TGCA 6 cut(s) 506, 680, 688, 967, 1025, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 121, 503, 1028
HpyF3I CTNAG 2 cut(s) 539, 570
HpySE526I ACGT 3 cut(s) 236, 480, 707
Hsp92I GRCGYC 2 cut(s) 236, 948
Hsp92II CATG 4 cut(s) 243, 727, 828, 943
HspAI GCGC 2 cut(s) 8, 715
KpnI GGTACC 1 cut(s) 699
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 448, 532, 743
LmnI GCTCC 1 cut(s) 488
Lsp1109I GCAGC 5 cut(s) 127, 412, 518, 827, 1009
MaeI CTAG 1 cut(s) 191
MaeII ACGT 3 cut(s) 236, 480, 707
MaeIII GTNAC 3 cut(s) 178, 402, 1039
MalI GATC 3 cut(s) 450, 534, 745
MboI GATC 3 cut(s) 448, 532, 743
MboII GAAGA 7 cut(s) 116, 267, 304, 426, 527, 785, 969
MflI RGATCY 1 cut(s) 743
MhlI GDGCHC 3 cut(s) 231, 467, 924
MluCI AATT 4 cut(s) 204, 259, 392, 689
MlyI GAGTC 1 cut(s) 1088
MreI CGCCGGCG 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 869
MseI TTAA 4 cut(s) 152, 201, 612, 711
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 4 cut(s) 159, 736, 819, 1032
MspR9I CCNGG 4 cut(s) 46, 215, 820, 875
MvaI CCWGG 3 cut(s) 46, 215, 875
MvnI CGCG 2 cut(s) 79, 172
MwoI GCNNNNNNNGC 4 cut(s) 76, 121, 503, 1028
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 820
NcoI CCATGG 1 cut(s) 723
NdeI CATATG 1 cut(s) 1054
NdeII GATC 3 cut(s) 448, 532, 743
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 4 cut(s) 243, 727, 828, 943
NlaIV GGNNCC 3 cut(s) 697, 734, 896
NmuCI GTSAC 1 cut(s) 1039
NruI TCGCGA 2 cut(s) 79, 172
NspI RCATGY 2 cut(s) 828, 943
NspV TTCGAA 1 cut(s) 253
PaeR7I CTCGAG 2 cut(s) 224, 784
PaqCI CACCTGC 2 cut(s) 43, 1036
PciI ACATGT 2 cut(s) 824, 939
PcsI WCGNNNNNNNCGW 1 cut(s) 625
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 869
PfeI GAWTC 2 cut(s) 210, 870
PflMI CCANNNNNTGG 2 cut(s) 729, 905
PinAI ACCGGT 1 cut(s) 735
PkrI GCNGC 7 cut(s) 7, 117, 189, 427, 508, 817, 1024
PleI GAGTC 1 cut(s) 1087
PpsI GAGTC 1 cut(s) 1087
PscI ACATGT 2 cut(s) 824, 939
Psp6I CCWGG 3 cut(s) 44, 213, 873
PspFI CCCAGC 2 cut(s) 355, 978
PspGI CCWGG 3 cut(s) 44, 213, 873
PspN4I GGNNCC 3 cut(s) 697, 734, 896
PspPI GGNCC 1 cut(s) 720
PspXI VCTCGAGB 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 743
RruI TCGCGA 2 cut(s) 79, 172
RsaI GTAC 2 cut(s) 697, 740
RsaNI GTAC 2 cut(s) 696, 739
SaqAI TTAA 4 cut(s) 152, 201, 612, 711
SatI GCNGC 7 cut(s) 6, 116, 188, 426, 507, 816, 1023
Sau3AI GATC 3 cut(s) 448, 532, 743
Sau96I GGNCC 1 cut(s) 720
SchI GAGTC 1 cut(s) 1088
ScrFI CCNGG 4 cut(s) 46, 215, 820, 875
SduI GDGCHC 3 cut(s) 231, 467, 924
SfcI CTRYAG 1 cut(s) 887
Sfr274I CTCGAG 2 cut(s) 224, 784
SfuI TTCGAA 1 cut(s) 253
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 1 cut(s) 720
SlaI CTCGAG 2 cut(s) 224, 784
SmlI CTYRAG 3 cut(s) 119, 224, 784
SmoI CTYRAG 3 cut(s) 119, 224, 784
Sse9I AATT 4 cut(s) 204, 259, 392, 689
SsiI CCGC 6 cut(s) 5, 162, 188, 486, 497, 761
SspI AATATT 1 cut(s) 963
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 4 cut(s) 44, 213, 818, 873
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 7 cut(s) 178, 400, 514, 648, 767, 926, 1015
TaiI ACGT 3 cut(s) 239, 483, 710
TaqI TCGA 4 cut(s) 225, 253, 628, 785
TasI AATT 4 cut(s) 204, 259, 392, 689
TauI GCSGC 2 cut(s) 8, 190
TfiI GAWTC 2 cut(s) 210, 870
Tru1I TTAA 4 cut(s) 152, 201, 612, 711
Tru9I TTAA 4 cut(s) 152, 201, 612, 711
TscAI CASTG 1 cut(s) 1044
TseFI GTSAC 1 cut(s) 1039
TseI GCWGC 5 cut(s) 115, 425, 506, 815, 1022
Tsp45I GTSAC 1 cut(s) 1039
TspDTI ATGAA 2 cut(s) 446, 1071
TspRI CASTG 1 cut(s) 1044
Van91I CCANNNNNTGG 2 cut(s) 729, 905
VpaK11BI GGWCC 1 cut(s) 720
XapI RAATTY 1 cut(s) 259
XceI RCATGY 2 cut(s) 828, 943
XhoI CTCGAG 2 cut(s) 224, 784
XmiI GTMKAC 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 869
XspI CTAG 1 cut(s) 191
ZraI GACGTC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.