Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

21906896 .. 21909634

Gene Structure 2739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGATCATGTTCATTTAAGTCCTTACTTGTCCTACATCAGTGGAGCATTAGCAGGTTGTGCGGCTACTGTCGGATCATACCCGTTTGATCTTCTAAGAACCTTGCTAGCTTCACAGGGGGAACCTAAGGTGTATCCAACTATGAGGTCTGCATTTGTCGATATAGTTAAAACTCGTGGATTTAGAGGATTGTATGCTGGATTGTCACCAACACTGGTTGAGATTGTTCCTTATGCAGGCTTGCAATTTGGTACCTATGACACATTTAAGCGCTGGACCATGATGTTGAACCAGTTTAGATCGTCTAGTGCAGACTTATACAGTACAGATAATAGTCTCACAAGCTTTCAGCTTTTCCTCTGTGGTCTTGCTGCTGGGACATGTGCCAATTTTGTCTGTCATCCATTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCACGGTGCCTACAGCAAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTCCCATCAACGGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

194

Amino Acids

21.18

Weight (kDa)

9.3

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 93	1.8e-23	Mitochondrial carrier protein
Mito_carr	PF00153	113 - 193	1.8e-16	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
Acc36I	ACCTGC	1 cut(s)	44
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	3 cut(s)	251, 450, 482
AccB7I	CCANNNNNTGG	1 cut(s)	461
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	12, 82
AfaI	GTAC	2 cut(s)	253, 325
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	236, 461, 538
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	289, 437
AluBI	AGCT	5 cut(s)	110, 345, 352, 548, 582
AluI	AGCT	5 cut(s)	110, 345, 352, 548, 582
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	12, 82
Ama87I	CYCGRG	1 cut(s)	468
Aor51HI	AGCGCT	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	371, 548
Asp700I	GAANNNNTTC	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	198
AsuNHI	GCTAGC	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	468
AvaII	GGWCC	1 cut(s)	276
AxyI	CCTNAGG	1 cut(s)	126
BanI	GGYRCC	3 cut(s)	251, 450, 482
BanII	GRGCYC	1 cut(s)	469
BauI	CACGAG	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	358, 535
BccI	CCATC	1 cut(s)	541
BciVI	GTATCC	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	107, 306
BfmI	CTRYAG	2 cut(s)	443, 487
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	3 cut(s)	63, 372, 549
BlsI	GCNGC	3 cut(s)	64, 373, 550
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	4 cut(s)	123, 253, 452, 484
BmtI	GCTAGC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 461, 538
Bse1I	ACTGG	2 cut(s)	219, 292
Bse21I	CCTNAGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	3 cut(s)	236, 461, 538
BseNI	ACTGG	2 cut(s)	219, 292
BseXI	GCAGC	2 cut(s)	358, 535
BseYI	CCCAGC	2 cut(s)	374, 504
BsgI	GTGCAG	2 cut(s)	330, 582
BshNI	GGYRCC	3 cut(s)	251, 450, 482
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	391, 515
BslI	CCNNNNNNNGG	3 cut(s)	236, 461, 538
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	391, 515
BsoBI	CYCGRG	1 cut(s)	468
Bsp1286I	GDGCHC	2 cut(s)	469, 480
Bsp143I	GATC	4 cut(s)	4, 74, 88, 299
BspACI	CCGC	1 cut(s)	62
BspLI	GGNNCC	4 cut(s)	123, 253, 452, 484
BspMI	ACCTGC	1 cut(s)	44
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	2 cut(s)	12, 82
BspT107I	GGYRCC	3 cut(s)	251, 450, 482
BsrI	ACTGG	2 cut(s)	219, 292
BssMI	GATC	4 cut(s)	4, 74, 88, 299
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst4CI	ACNGT	4 cut(s)	70, 323, 482, 541
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	4 cut(s)	108, 238, 242, 580
BstDEI	CTNAG	2 cut(s)	95, 126
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	4 cut(s)	7, 77, 91, 302
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	4 cut(s)	4, 74, 88, 299
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 554
BstNSI	RCATGY	1 cut(s)	384
BstSFI	CTRYAG	2 cut(s)	443, 487
BstV1I	GCAGC	2 cut(s)	358, 535
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	46, 212, 570
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	4 cut(s)	108, 238, 242, 580
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	252, 324
CviAII	CATG	3 cut(s)	8, 280, 381
CviQI	GTAC	2 cut(s)	252, 324
DdeI	CTNAG	2 cut(s)	95, 126
DpnI	GATC	4 cut(s)	6, 76, 90, 301
DpnII	GATC	4 cut(s)	4, 74, 88, 299
Eco24I	GRGCYC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	276
Eco47III	AGCGCT	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	468
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	469
FaeI	CATG	3 cut(s)	11, 283, 384
FaqI	GGGAC	2 cut(s)	391, 515
FatI	CATG	3 cut(s)	7, 279, 380
Fnu4HI	GCNGC	3 cut(s)	63, 372, 549
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	3 cut(s)	63, 372, 549
FspBI	CTAG	2 cut(s)	107, 306
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	63, 372, 549
GsaI	CCCAGC	2 cut(s)	378, 508
HaeII	RGCGCY	1 cut(s)	274
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	11, 283, 384
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	1 cut(s)	426
HphI	GGTGA	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	2 cut(s)	418, 430
HpyAV	CCTTC	2 cut(s)	431, 494
HpyCH4III	ACNGT	4 cut(s)	70, 323, 482, 541
HpyCH4V	TGCA	5 cut(s)	152, 236, 244, 311, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 554
HpyF3I	CTNAG	2 cut(s)	95, 126
Hsp92II	CATG	3 cut(s)	11, 283, 384
HspAI	GCGC	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	4, 74, 88, 299
LmnI	GCTCC	2 cut(s)	44, 556
Lsp1109I	GCAGC	2 cut(s)	358, 535
MaeI	CTAG	2 cut(s)	107, 306
MaeIII	GTNAC	2 cut(s)	204, 565
MalI	GATC	4 cut(s)	6, 76, 90, 301
MboI	GATC	4 cut(s)	4, 74, 88, 299
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	469, 480
MluCI	AATT	2 cut(s)	245, 388
MmeI	TCCRAC	2 cut(s)	52, 161
MnlI	CCTC	4 cut(s)	138, 179, 368, 441
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	3 cut(s)	17, 168, 267
MwoI	GCNNNNNNNGC	2 cut(s)	59, 554
NdeII	GATC	4 cut(s)	4, 74, 88, 299
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	11, 283, 384
NlaIV	GGNNCC	4 cut(s)	123, 253, 452, 484
NmuCI	GTSAC	2 cut(s)	204, 565
NspI	RCATGY	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	468
PciI	ACATGT	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	64, 373, 550
PscI	ACATGT	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	519
PspFI	CCCAGC	2 cut(s)	374, 504
PspN4I	GGNNCC	4 cut(s)	123, 253, 452, 484
PspPI	GGNCC	1 cut(s)	276
PspXI	VCTCGAGB	1 cut(s)	468
RsaI	GTAC	2 cut(s)	253, 325
RsaNI	GTAC	2 cut(s)	252, 324
SaqAI	TTAA	3 cut(s)	17, 168, 267
SatI	GCNGC	3 cut(s)	63, 372, 549
Sau3AI	GATC	4 cut(s)	4, 74, 88, 299
Sau96I	GGNCC	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	469, 480
SfcI	CTRYAG	2 cut(s)	443, 487
Sfr274I	CTCGAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	2 cut(s)	245, 388
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	107, 306
TaaI	ACNGT	4 cut(s)	70, 323, 482, 541
TaqI	TCGA	2 cut(s)	159, 469
TasI	AATT	2 cut(s)	245, 388
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	3 cut(s)	17, 168, 267
Tru9I	TTAA	3 cut(s)	17, 168, 267
TscAI	CASTG	3 cut(s)	46, 219, 570
TseFI	GTSAC	2 cut(s)	204, 565
TseI	GCWGC	2 cut(s)	371, 548
Tsp45I	GTSAC	2 cut(s)	204, 565
TspRI	CASTG	3 cut(s)	46, 219, 570
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	276
XagI	CCTNNNNNAGG	1 cut(s)	234
XceI	RCATGY	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	2 cut(s)	107, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.