Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

16879926 .. 16883277

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGACAAGAGCTTAATCGCAGTCCCCTTGCCTCGTCCCGTTTCAGTTCCAGAAGACAGAGATTTGCCTCTCGAATTTCCCATACGGCGTGTCCTCTACTCTGAGATGCTTGCTGCTGAAACCATTGTTTATCAGAAGGACAATCTGATTTTTCTTTTAAATTGGTCTGCAGTCATGTTTTTGTACTTAGGCAAGTTGGGTTGTAAGCTAGATGATCATGTTCATTTAAATCCTTACTTGTCCTACATCAGTAGAGCATTAGCAGGTTGTGCGGCTACTGTCGGATCATACCCGTTTGATCTTCTAAGAACCTTGCTAGCTTCACAGGGGGAACCTAAGATGTTGAACCAGTTTAGATTGTCTAGTGCAGACTTATACAGTACAGATAATAGTCTCACAAGCTTTCAGCTTTTCCTCTGTGGTCTGGCTGCTGGGACATGTGCCAAACTTGTCTGTCATCCATTTGATGTAGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCACCGTGCCTACAGCAATATGGTTAATGCTTTGCGACGAATAGTGCAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTCCCATCAACGGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

223

Amino Acids

24.79

Weight (kDa)

9.21

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	132 - 222	3e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	507
AccB7I	CCANNNNNTGG	1 cut(s)	518
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	2 cut(s)	185, 382
AfiI	CCNNNNNNNGG	2 cut(s)	518, 625
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	346, 494
AluBI	AGCT	7 cut(s)	12, 208, 320, 402, 409, 635, 669
AluI	AGCT	7 cut(s)	12, 208, 320, 402, 409, 635, 669
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	525
ApeKI	GCWGC	3 cut(s)	113, 428, 635
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	482
AsuNHI	GCTAGC	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	100, 415, 622
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	3 cut(s)	209, 317, 363
BfmI	CTRYAG	3 cut(s)	168, 500, 544
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	114, 273, 429, 636
BlsI	GCNGC	4 cut(s)	115, 274, 430, 637
BmeT110I	CYCGRG	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	333, 509
BmsI	GCATC	1 cut(s)	96
BmtI	GCTAGC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 625
Bse1I	ACTGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	518, 625
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	100, 415, 622
BseYI	CCCAGC	2 cut(s)	431, 591
BsgI	GTGCAG	3 cut(s)	387, 599, 669
BshNI	GGYRCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	525
BslFI	GGGAC	4 cut(s)	8, 21, 448, 602
BslI	CCNNNNNNNGG	2 cut(s)	518, 625
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	4 cut(s)	8, 21, 448, 602
BsoBI	CYCGRG	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	526, 537
Bsp143I	GATC	3 cut(s)	214, 284, 298
BspACI	CCGC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	333, 509
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	254
BspOI	GCTAGC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	3 cut(s)	214, 284, 298
Bst4CI	ACNGT	4 cut(s)	280, 380, 539, 628
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	111, 318, 667
BstDEI	CTNAG	4 cut(s)	102, 187, 305, 336
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	3 cut(s)	217, 287, 301
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	214, 284, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 641
BstNSI	RCATGY	1 cut(s)	441
BstSFI	CTRYAG	3 cut(s)	168, 500, 544
BstV1I	GCAGC	3 cut(s)	100, 415, 622
BstV2I	GAAGAC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	111, 318, 667
Csp6I	GTAC	2 cut(s)	184, 381
CviAII	CATG	3 cut(s)	175, 218, 438
CviQI	GTAC	2 cut(s)	184, 381
DdeI	CTNAG	4 cut(s)	102, 187, 305, 336
DpnI	GATC	3 cut(s)	216, 286, 300
DpnII	GATC	3 cut(s)	214, 284, 298
DraI	TTTAAA	2 cut(s)	159, 228
Eco24I	GRGCYC	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	526
FaeI	CATG	3 cut(s)	178, 221, 441
FaiI	YATR	9 cut(s)	83, 176, 219, 289, 376, 439, 519, 554, 606
FaqI	GGGAC	4 cut(s)	8, 21, 448, 602
FatI	CATG	3 cut(s)	174, 217, 437
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	114, 273, 429, 636
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	4 cut(s)	114, 273, 429, 636
FspBI	CTAG	3 cut(s)	209, 317, 363
GluI	GCNGC	4 cut(s)	114, 273, 429, 636
GsaI	CCCAGC	2 cut(s)	435, 595
Hin1II	CATG	3 cut(s)	178, 221, 441
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	1 cut(s)	483
Hpy188I	TCNGA	4 cut(s)	103, 135, 147, 284
Hpy188III	TCNNGA	4 cut(s)	50, 71, 475, 487
Hpy99I	CGWCG	1 cut(s)	573
HpyAV	CCTTC	3 cut(s)	130, 488, 581
HpyCH4III	ACNGT	4 cut(s)	280, 380, 539, 628
HpyCH4V	TGCA	4 cut(s)	170, 368, 580, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 641
HpyF3I	CTNAG	4 cut(s)	102, 187, 305, 336
Hsp92II	CATG	3 cut(s)	178, 221, 441
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	214, 284, 298
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	3 cut(s)	100, 415, 622
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	3 cut(s)	209, 317, 363
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	3 cut(s)	216, 286, 300
MboI	GATC	3 cut(s)	214, 284, 298
MboII	GAAGA	2 cut(s)	65, 293
MhlI	GDGCHC	2 cut(s)	526, 537
MluCI	AATT	2 cut(s)	74, 160
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	5 cut(s)	42, 78, 104, 425, 498
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	4 cut(s)	14, 158, 227, 558
MwoI	GCNNNNNNNGC	2 cut(s)	269, 641
NdeII	GATC	3 cut(s)	214, 284, 298
NheI	GCTAGC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	178, 221, 441
NlaIV	GGNNCC	2 cut(s)	333, 509
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	525
PciI	ACATGT	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	4 cut(s)	115, 274, 430, 637
PscI	ACATGT	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	606
PspFI	CCCAGC	2 cut(s)	431, 591
PspN4I	GGNNCC	2 cut(s)	333, 509
PspXI	VCTCGAGB	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	185, 382
RsaNI	GTAC	2 cut(s)	184, 381
SaqAI	TTAA	4 cut(s)	14, 158, 227, 558
SatI	GCNGC	4 cut(s)	114, 273, 429, 636
Sau3AI	GATC	3 cut(s)	214, 284, 298
SduI	GDGCHC	2 cut(s)	526, 537
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	3 cut(s)	168, 500, 544
Sfr274I	CTCGAG	1 cut(s)	525
SlaI	CTCGAG	1 cut(s)	525
SmiI	ATTTAAAT	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	2 cut(s)	74, 160
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	3 cut(s)	209, 317, 363
SwaI	ATTTAAAT	1 cut(s)	228
TaaI	ACNGT	4 cut(s)	280, 380, 539, 628
TaqI	TCGA	2 cut(s)	72, 526
TasI	AATT	2 cut(s)	74, 160
TatI	WGTACW	2 cut(s)	183, 380
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	4 cut(s)	14, 158, 227, 558
Tru9I	TTAA	4 cut(s)	14, 158, 227, 558
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	3 cut(s)	113, 428, 635
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	657
Van91I	CCANNNNNTGG	1 cut(s)	518
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	441
XhoI	CTCGAG	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	3 cut(s)	209, 317, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.