Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

22151534 .. 22154244

Gene Structure 2711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG221100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCTTGCTACTGAAACCATTATTTATCAGAAGGAAAATCTGATTTTTCTTTTAAATTGGTCTGCAGTCATGTTTTTGTACTTAGGCAAGTTGGGTTGTAAGCTAGATGATCATGTTCATTTAAGTCCTTACTTGTCCTACATCAGTGGAGCATTAGCAGGTTGTGCGGCTACTGTCGGATCATACCCGTTTGATCTTCTAAGAACCTTGCTAGCTTCACAGGGGGAACCTAAGGTGTATCCAACTATGAGGTCTGCATTTGTCGATATAGTTAAAACTCGTGGATTTAGAGGATTGTATGCTGGATTGTCACCAACACTGGTTGAGATTGTTCCTTATGCAGGCTTGCAATTTGGTACCTATGACACATTTAAGCGCTGGACCATGATGTTGAACCAGTTTAGATCGTCTAGTGCAGACTTATACAGTACAGATAATAGTCTCACAAGCTTTCAGCTTTTCCTCTGTGGTCTTGCTGCTGGGACATGTGCCAATTTTGTCTGTCATCCATTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCACGGTGCCTACAGCAAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTCCCATCAACGGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

229

Amino Acids

25.23

Weight (kDa)

9.15

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	41 - 128	2.7e-23	Mitochondrial carrier protein
Mito_carr	PF00153	148 - 228	2.6e-16	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	3 cut(s)	356, 555, 587
AccB7I	CCANNNNNTGG	1 cut(s)	566
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	187
AfaI	GTAC	3 cut(s)	80, 358, 430
AfeI	AGCGCT	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	341, 566, 643
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	394, 542
AluBI	AGCT	6 cut(s)	103, 215, 450, 457, 653, 687
AluI	AGCT	6 cut(s)	103, 215, 450, 457, 653, 687
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	573
Aor51HI	AGCGCT	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	476, 653
Asp700I	GAANNNNTTC	1 cut(s)	530
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	303
AsuNHI	GCTAGC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	381
AxyI	CCTNAGG	1 cut(s)	231
BanI	GGYRCC	3 cut(s)	356, 555, 587
BanII	GRGCYC	1 cut(s)	574
BauI	CACGAG	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	463, 640
BccI	CCATC	1 cut(s)	646
BciVI	GTATCC	1 cut(s)	249
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	104, 212, 411
BfmI	CTRYAG	3 cut(s)	63, 548, 592
BfoI	RGCGCY	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	3 cut(s)	168, 477, 654
BlsI	GCNGC	3 cut(s)	169, 478, 655
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	4 cut(s)	228, 358, 557, 589
BmtI	GCTAGC	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 566, 643
Bse1I	ACTGG	2 cut(s)	324, 397
Bse21I	CCTNAGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	3 cut(s)	341, 566, 643
BseNI	ACTGG	2 cut(s)	324, 397
BseXI	GCAGC	2 cut(s)	463, 640
BseYI	CCCAGC	2 cut(s)	479, 609
BsgI	GTGCAG	2 cut(s)	435, 687
BshNI	GGYRCC	3 cut(s)	356, 555, 587
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	573
BslFI	GGGAC	2 cut(s)	496, 620
BslI	CCNNNNNNNGG	3 cut(s)	341, 566, 643
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	496, 620
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	2 cut(s)	574, 585
Bsp143I	GATC	4 cut(s)	109, 179, 193, 404
BspACI	CCGC	1 cut(s)	167
BspLI	GGNNCC	4 cut(s)	228, 358, 557, 589
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	3 cut(s)	356, 555, 587
BsrI	ACTGG	2 cut(s)	324, 397
BssMI	GATC	4 cut(s)	109, 179, 193, 404
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	4 cut(s)	175, 428, 587, 646
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	5 cut(s)	6, 213, 343, 347, 685
BstDEI	CTNAG	3 cut(s)	82, 200, 231
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	505
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	4 cut(s)	112, 182, 196, 407
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	4 cut(s)	109, 179, 193, 404
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 659
BstNSI	RCATGY	1 cut(s)	489
BstSFI	CTRYAG	3 cut(s)	63, 548, 592
BstV1I	GCAGC	2 cut(s)	463, 640
Bsu36I	CCTNAGG	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	3 cut(s)	151, 317, 675
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	5 cut(s)	6, 213, 343, 347, 685
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	79, 357, 429
CviAII	CATG	4 cut(s)	70, 113, 385, 486
CviQI	GTAC	3 cut(s)	79, 357, 429
DdeI	CTNAG	3 cut(s)	82, 200, 231
DpnI	GATC	4 cut(s)	111, 181, 195, 406
DpnII	GATC	4 cut(s)	109, 179, 193, 404
DraI	TTTAAA	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	573
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	574
FaeI	CATG	4 cut(s)	73, 116, 388, 489
FaqI	GGGAC	2 cut(s)	496, 620
FatI	CATG	4 cut(s)	69, 112, 384, 485
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	168, 477, 654
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	3 cut(s)	168, 477, 654
FspBI	CTAG	3 cut(s)	104, 212, 411
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	168, 477, 654
GsaI	CCCAGC	2 cut(s)	483, 613
HaeII	RGCGCY	1 cut(s)	379
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	73, 116, 388, 489
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	1 cut(s)	531
HphI	GGTGA	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	30, 42, 179
Hpy188III	TCNNGA	2 cut(s)	523, 535
HpyAV	CCTTC	3 cut(s)	25, 536, 599
HpyCH4III	ACNGT	4 cut(s)	175, 428, 587, 646
HpyCH4V	TGCA	6 cut(s)	65, 257, 341, 349, 416, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 659
HpyF3I	CTNAG	3 cut(s)	82, 200, 231
Hsp92II	CATG	4 cut(s)	73, 116, 388, 489
HspAI	GCGC	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 179, 193, 404
LmnI	GCTCC	2 cut(s)	149, 661
Lsp1109I	GCAGC	2 cut(s)	463, 640
MaeI	CTAG	3 cut(s)	104, 212, 411
MaeIII	GTNAC	2 cut(s)	309, 670
MalI	GATC	4 cut(s)	111, 181, 195, 406
MboI	GATC	4 cut(s)	109, 179, 193, 404
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	574, 585
MluCI	AATT	3 cut(s)	55, 350, 493
MmeI	TCCRAC	2 cut(s)	157, 266
MnlI	CCTC	4 cut(s)	243, 284, 473, 546
MroXI	GAANNNNTTC	1 cut(s)	530
MseI	TTAA	4 cut(s)	53, 122, 273, 372
MwoI	GCNNNNNNNGC	2 cut(s)	164, 659
NdeII	GATC	4 cut(s)	109, 179, 193, 404
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	4 cut(s)	73, 116, 388, 489
NlaIV	GGNNCC	4 cut(s)	228, 358, 557, 589
NmuCI	GTSAC	2 cut(s)	309, 670
NspI	RCATGY	1 cut(s)	489
PaeR7I	CTCGAG	1 cut(s)	573
PciI	ACATGT	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	531
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	169, 478, 655
PscI	ACATGT	1 cut(s)	485
PsiI	TTATAA	1 cut(s)	624
PspFI	CCCAGC	2 cut(s)	479, 609
PspN4I	GGNNCC	4 cut(s)	228, 358, 557, 589
PspPI	GGNCC	1 cut(s)	381
PspXI	VCTCGAGB	1 cut(s)	573
PstI	CTGCAG	1 cut(s)	67
RsaI	GTAC	3 cut(s)	80, 358, 430
RsaNI	GTAC	3 cut(s)	79, 357, 429
SaqAI	TTAA	4 cut(s)	53, 122, 273, 372
SatI	GCNGC	3 cut(s)	168, 477, 654
Sau3AI	GATC	4 cut(s)	109, 179, 193, 404
Sau96I	GGNCC	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	574, 585
SfcI	CTRYAG	3 cut(s)	63, 548, 592
Sfr274I	CTCGAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	3 cut(s)	55, 350, 493
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	3 cut(s)	104, 212, 411
TaaI	ACNGT	4 cut(s)	175, 428, 587, 646
TaqI	TCGA	2 cut(s)	264, 574
TasI	AATT	3 cut(s)	55, 350, 493
TatI	WGTACW	2 cut(s)	78, 428
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	4 cut(s)	53, 122, 273, 372
Tru9I	TTAA	4 cut(s)	53, 122, 273, 372
TscAI	CASTG	3 cut(s)	151, 324, 675
TseFI	GTSAC	2 cut(s)	309, 670
TseI	GCWGC	2 cut(s)	476, 653
Tsp45I	GTSAC	2 cut(s)	309, 670
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	151, 324, 675
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	381
XagI	CCTNNNNNAGG	1 cut(s)	339
XceI	RCATGY	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	3 cut(s)	104, 212, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.