Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

19856830 .. 19859847

Gene Structure 3018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGATTCCTACGACGGCGACGGTTGATGATGAGCCGGGACAGATTAAACGTGCTCTGATTGATGCTTCTGCCGGAGCTATCTCTGGTGGTGTTTCTCGTTCTGTAACTTCTCCTCTTGATGTCATTAAGATTAGATTTCAGGTTCAGCTAGAACCGACGACTTCATGGGGTTTGGTTCGGGGAAACTTGTCAGGAGCTTCTAAGTATACTGGAATGGTACAGGCGACTAAAGATATATTTAGAGAAGAAGGTTTTCGGGGGTTTTGGCGGGGTAATGTGCCAGCTTTGCTCATGGTCATGCCGTATACTTCAATTCAGTTTACAGTACTACATAAGCTGAAATCTTTTGCATCTGGTTCTACTAAAACAGAGGATCATATACATTTGAGCCCTTATCTATCCTTCGTCAGTGGAGCGTTAGCAGGATGTGCTGCTACTCTAGGATCTTATCCTTTTGATCTTTTAAGGACAATATTGGCCTCACAAGGGGAGCCTAAGGTGTATCCAACAATGAGGTCTGCTTTTGTCGATATTATTCAGTCTCGAGGTATAAGAGGATTGTATAATGGATTAACACCAACTCTTGTTGAGATTGTGCCTTACGCTGGCCTGCAATTTGGCACATATGATATGTTTAAGCGTTGGATGATGGACTGGAATCGATACAAATTATCCTCCAAAATCCCGATCAATGTGGACACCAACCTTTCTAGCTTCCAGCTTTTCATTTGTGGGCTTGGGGCGGGCACTAGCGCCAAGCTCGTCTGCCATCCCCTTGATGTGGTCAAAAAACGATTCCAGATTGAAGGTTTACAGAGACATCCAAGATATGGAGCCCGAGTGGAGCGACGTGCATACAGAAACATGTTAGACGGTCTTAGACAGATTATGATATCAGAAGGGTGGCATGGTCTGTACAAAGGCATTGTGCCATCGACTGTGAAAGCTGCTCCTGCTGGTGCTGTAACCTTTGTGGCCTATGAGTTTACCTCCGATTGGTTGGAGTCAATTTCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

339

Amino Acids

37.49

Weight (kDa)

9.55

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	1 - 46	2.6e-11	Mitochondrial carrier protein
Mito_carr	PF00153	58 - 147	1.7e-23	Mitochondrial carrier protein
Mito_carr	PF00153	165 - 264	2.9e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccI	GTMKAC	2 cut(s)	206, 305
AciI	CCGC	2 cut(s)	268, 743
AclWI	GGATC	2 cut(s)	381, 451
AfaI	GTAC	3 cut(s)	219, 327, 917
AfiI	CCNNNNNNNGG	5 cut(s)	486, 605, 781, 830, 996
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	2 cut(s)	312, 806
AjiI	CACGTC	1 cut(s)	851
AluBI	AGCT	9 cut(s)	77, 148, 197, 284, 337, 714, 721, 760, 947
AluI	AGCT	9 cut(s)	77, 148, 197, 284, 337, 714, 721, 760, 947
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	2 cut(s)	546, 811
AlwI	GGATC	2 cut(s)	381, 451
Ama87I	CYCGRG	2 cut(s)	543, 837
AoxI	GGCC	3 cut(s)	477, 607, 975
ApeKI	GCWGC	2 cut(s)	431, 947
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	755
AsuC2I	CCSGG	1 cut(s)	36
AvaI	CYCGRG	2 cut(s)	543, 837
AxyI	CCTNAGG	1 cut(s)	495
BaeGI	GKGCMC	1 cut(s)	749
BanII	GRGCYC	2 cut(s)	392, 838
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	418, 934
BccI	CCATC	3 cut(s)	643, 777, 940
BceAI	ACGGC	2 cut(s)	30, 286
BciVI	GTATCC	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	546, 811
BfaI	CTAG	4 cut(s)	149, 440, 711, 750
BfoI	RGCGCY	1 cut(s)	756
BfuI	GTATCC	1 cut(s)	513
BisI	GCNGC	2 cut(s)	432, 948
BlsI	GCNGC	2 cut(s)	433, 949
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	36
BmeT110I	CYCGRG	2 cut(s)	543, 837
BmgBI	CACGTC	1 cut(s)	851
BmiI	GGNNCC	2 cut(s)	492, 835
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	52, 359
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpuMI	CCSGG	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	5 cut(s)	486, 605, 781, 830, 996
Bse1I	ACTGG	2 cut(s)	214, 659
Bse21I	CCTNAGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	661
BseGI	GGATG	4 cut(s)	431, 651, 769, 820
BseLI	CCNNNNNNNGG	5 cut(s)	486, 605, 781, 830, 996
BseNI	ACTGG	2 cut(s)	214, 659
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	2 cut(s)	418, 934
BshFI	GGCC	3 cut(s)	479, 609, 977
BshVI	ATCGAT	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	55
BsiHKCI	CYCGRG	2 cut(s)	543, 837
BsiSI	CCGG	2 cut(s)	35, 72
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	5 cut(s)	486, 605, 781, 830, 996
BsmAI	GTCTC	2 cut(s)	546, 811
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	479, 609, 977
BsoBI	CYCGRG	2 cut(s)	543, 837
Bsp1286I	GDGCHC	4 cut(s)	55, 392, 749, 838
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	4 cut(s)	373, 443, 457, 687
BspACI	CCGC	2 cut(s)	268, 743
BspANI	GGCC	3 cut(s)	479, 609, 977
BspDI	ATCGAT	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	492, 835
BspPI	GGATC	2 cut(s)	381, 451
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	2 cut(s)	214, 659
BssMI	GATC	4 cut(s)	373, 443, 457, 687
BssNAI	GTATAC	2 cut(s)	207, 306
Bst1107I	GTATAC	2 cut(s)	207, 306
Bst4CI	ACNGT	4 cut(s)	22, 325, 875, 940
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	915
BstC8I	GCNNGC	4 cut(s)	282, 607, 611, 745
BstDEI	CTNAG	3 cut(s)	201, 495, 878
BstF5I	GGATG	4 cut(s)	431, 651, 769, 820
BstH2I	RGCGCY	1 cut(s)	756
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	4 cut(s)	376, 446, 460, 690
BstMAI	GTCTC	2 cut(s)	546, 811
BstMBI	GATC	4 cut(s)	373, 443, 457, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 428, 953
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	749
BstV1I	GCAGC	2 cut(s)	418, 934
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BstZ17I	GTATAC	2 cut(s)	207, 306
Bsu15I	ATCGAT	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	3 cut(s)	479, 609, 977
BsuTUI	ATCGAT	1 cut(s)	661
BtrI	CACGTC	1 cut(s)	851
BtsCI	GGATG	4 cut(s)	431, 651, 769, 820
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	4 cut(s)	282, 607, 611, 745
CfoI	GCGC	1 cut(s)	755
ClaI	ATCGAT	1 cut(s)	661
Csp6I	GTAC	3 cut(s)	218, 326, 916
CviAII	CATG	5 cut(s)	165, 292, 298, 865, 908
CviQI	GTAC	3 cut(s)	218, 326, 916
DdeI	CTNAG	3 cut(s)	201, 495, 878
DpnI	GATC	4 cut(s)	375, 445, 459, 689
DpnII	GATC	4 cut(s)	373, 443, 457, 687
Eco24I	GRGCYC	2 cut(s)	392, 838
Eco32I	GATATC	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	2 cut(s)	543, 837
EcoRV	GATATC	1 cut(s)	894
EcoT38I	GRGCYC	2 cut(s)	392, 838
FaeI	CATG	5 cut(s)	168, 295, 301, 868, 911
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	5 cut(s)	164, 291, 297, 864, 907
FauI	CCCGC	2 cut(s)	261, 736
FauNDI	CATATG	1 cut(s)	625
FblI	GTMKAC	2 cut(s)	206, 305
Fnu4HI	GCNGC	2 cut(s)	432, 948
FokI	GGATG	4 cut(s)	438, 658, 756, 807
FriOI	GRGCYC	2 cut(s)	392, 838
Fsp4HI	GCNGC	2 cut(s)	432, 948
FspBI	CTAG	4 cut(s)	149, 440, 711, 750
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	2 cut(s)	432, 948
HaeII	RGCGCY	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	479, 609, 977
HapII	CCGG	2 cut(s)	35, 72
HhaI	GCGC	1 cut(s)	755
Hin1II	CATG	5 cut(s)	168, 295, 301, 868, 911
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HinfI	GANTC	4 cut(s)	4, 658, 795, 1004
HpaII	CCGG	2 cut(s)	35, 72
Hpy166II	GTNNAC	6 cut(s)	207, 306, 321, 697, 812, 987
Hpy188I	TCNGA	3 cut(s)	57, 898, 994
Hpy188III	TCNNGA	5 cut(s)	116, 192, 543, 685, 799
Hpy8I	GTNNAC	6 cut(s)	207, 306, 321, 697, 812, 987
Hpy99I	CGWCG	4 cut(s)	16, 22, 160, 852
HpyAV	CCTTC	4 cut(s)	242, 412, 800, 893
HpyCH4III	ACNGT	4 cut(s)	22, 325, 875, 940
HpyCH4IV	ACGT	2 cut(s)	49, 850
HpyCH4V	TGCA	3 cut(s)	350, 613, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 428, 953
HpyF3I	CTNAG	3 cut(s)	201, 495, 878
HpySE526I	ACGT	2 cut(s)	49, 850
Hsp92II	CATG	5 cut(s)	168, 295, 301, 868, 911
HspAI	GCGC	1 cut(s)	753
Kzo9I	GATC	4 cut(s)	373, 443, 457, 687
LmnI	GCTCC	7 cut(s)	74, 194, 413, 490, 833, 844, 955
Lsp1109I	GCAGC	2 cut(s)	418, 934
LweI	GCATC	2 cut(s)	52, 359
MaeI	CTAG	4 cut(s)	149, 440, 711, 750
MaeII	ACGT	2 cut(s)	49, 850
MaeIII	GTNAC	2 cut(s)	103, 964
MalI	GATC	4 cut(s)	375, 445, 459, 689
MboI	GATC	4 cut(s)	373, 443, 457, 687
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	4 cut(s)	55, 392, 749, 838
MluCI	AATT	4 cut(s)	312, 614, 668, 1008
MlyI	GAGTC	1 cut(s)	1013
MmeI	TCCRAC	3 cut(s)	530, 623, 981
MnlI	CCTC	8 cut(s)	123, 364, 490, 507, 539, 548, 685, 1000
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	5 cut(s)	45, 126, 464, 572, 636
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	2 cut(s)	35, 72
MspR9I	CCNGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	286, 428, 953
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	4 cut(s)	373, 443, 457, 687
NlaIII	CATG	5 cut(s)	168, 295, 301, 868, 911
NlaIV	GGNNCC	2 cut(s)	492, 835
NspI	RCATGY	1 cut(s)	868
PaeR7I	CTCGAG	1 cut(s)	543
PciI	ACATGT	1 cut(s)	864
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	4, 658, 795
PflMI	CCANNNNNTGG	1 cut(s)	830
PkrI	GCNGC	2 cut(s)	433, 949
PleI	GAGTC	1 cut(s)	1012
PpsI	GAGTC	1 cut(s)	1012
PscI	ACATGT	1 cut(s)	864
PspN4I	GGNNCC	2 cut(s)	492, 835
PsuI	RGATCY	1 cut(s)	443
RsaI	GTAC	3 cut(s)	219, 327, 917
RsaNI	GTAC	3 cut(s)	218, 326, 916
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	5 cut(s)	45, 126, 464, 572, 636
SatI	GCNGC	2 cut(s)	432, 948
Sau3AI	GATC	4 cut(s)	373, 443, 457, 687
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	1 cut(s)	1013
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	4 cut(s)	55, 392, 749, 838
SfaNI	GCATC	2 cut(s)	52, 359
Sfr274I	CTCGAG	1 cut(s)	543
SlaI	CTCGAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	4 cut(s)	312, 614, 668, 1008
SsiI	CCGC	2 cut(s)	268, 743
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	4 cut(s)	149, 440, 711, 750
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	4 cut(s)	22, 325, 875, 940
TaiI	ACGT	2 cut(s)	52, 853
TaqI	TCGA	4 cut(s)	528, 544, 661, 935
TasI	AATT	4 cut(s)	312, 614, 668, 1008
TatI	WGTACW	2 cut(s)	325, 915
TfiI	GAWTC	3 cut(s)	4, 658, 795
Tru1I	TTAA	5 cut(s)	45, 126, 464, 572, 636
Tru9I	TTAA	5 cut(s)	45, 126, 464, 572, 636
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	2 cut(s)	431, 947
TspDTI	ATGAA	2 cut(s)	153, 715
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	830
XceI	RCATGY	1 cut(s)	868
XhoI	CTCGAG	1 cut(s)	543
XmiI	GTMKAC	2 cut(s)	206, 305
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	4 cut(s)	149, 440, 711, 750
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.