Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008440.1

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

80950 .. 84360

Gene Structure 3411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008440.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggaagagcccgggcagctcaagcgggccgtcattgatgccacggccggtttaatcgccggtgggatttcccggactgttacttcgccgcttgacgttatcaagattcgattccaggttcaattggagcctacatcttcatgggctttggttcgtcggaatttgactgggccatcaaaatataccgggatgtttcaagccacaaaggatatttttaaagaggaaggcttaccgggtttttggcgaggcaatgttccagctctacttatggttatgccatataccgcaatacagtttactgtactacacaagttgaagacatttgccgctggttcttccaagacagaggatcatgctcatttaagtccttacttgtcctacatcagtggagcattagcaggttgtgcagctactgttggatcatacccgtttgatcttcttagaaccttgctagcttcacagggggaacctaaggtgtatccaactatgaggtctgcatttgtcgatatagttaaaactcatggatttcgaggattgtatgctggattgtcaccaacactggttgagattgttccttatgcaggcttgcagtttggtacctatgacacatttaagcgctggactgtgatgttgaaccagtttagatcgtctagtccagacttatacagtacagataatagtcccacaagcttccagcttttcctttgtggtctggctgccgggacatgtgccaaacttgtctgtcatccacttgatgtggtcaagaaaagattccagattgaaggactacagaggcacccaagatatggggctcgaatagagcaccgtgcctacagcaatatggttgatgctttgcgacggatagtgcagaaagaaggctgggctggtctttataagggaattgtcccatcaacggtcaaagctgctcctgctggtgcagtgacatttgtggcttatgaatatacatccgactggttagagtccagaataacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

331

Amino Acids

36.47

Weight (kDa)

9.45

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	596, 795
AccB7I	CCANNNNNTGG	1 cut(s)	806
AciI	CCGC	4 cut(s)	25, 89, 285, 327
AclWI	GGATC	2 cut(s)	357, 427
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	3 cut(s)	303, 598, 670
AfeI	AGCGCT	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	581, 806, 913
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	122, 197, 316, 634, 782
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	7 cut(s)	19, 260, 410, 455, 690, 697, 923
AluI	AGCT	7 cut(s)	19, 260, 410, 455, 690, 697, 923
Alw21I	GWGCWC	1 cut(s)	825
AlwI	GGATC	2 cut(s)	357, 427
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	11
Aor51HI	AGCGCT	1 cut(s)	617
AoxI	GGCC	3 cut(s)	27, 45, 170
ApeKI	GCWGC	4 cut(s)	16, 407, 716, 923
ApoI	RAATTY	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
Asp700I	GAANNNNTTC	1 cut(s)	770
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	2 cut(s)	27, 170
AsuC2I	CCSGG	6 cut(s)	12, 13, 73, 187, 234, 721
AsuHPI	GGTGA	1 cut(s)	543
AsuNHI	GCTAGC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	471
BanI	GGYRCC	2 cut(s)	596, 795
BanII	GRGCYC	2 cut(s)	12, 814
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	4 cut(s)	28, 419, 703, 910
BccI	CCATC	2 cut(s)	181, 916
BceAI	ACGGC	2 cut(s)	14, 60
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	489
BcnI	CCSGG	6 cut(s)	12, 13, 73, 187, 234, 721
BfaI	CTAG	2 cut(s)	452, 651
BfmI	CTRYAG	2 cut(s)	788, 832
BfoI	RGCGCY	1 cut(s)	619
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
BlsI	GCNGC	6 cut(s)	18, 90, 328, 409, 718, 925
Bme1390I	CCNGG	7 cut(s)	12, 13, 73, 116, 187, 234, 721
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	27, 170
BmiI	GGNNCC	4 cut(s)	129, 468, 598, 797
BmrFI	CCNGG	7 cut(s)	12, 13, 73, 116, 187, 234, 721
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	28, 838
BmtI	GCTAGC	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	6 cut(s)	12, 13, 73, 187, 234, 721
BsaJI	CCNNGG	2 cut(s)	11, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	581, 806, 913
Bse118I	RCCGGY	2 cut(s)	47, 59
Bse1I	ACTGG	4 cut(s)	172, 564, 637, 977
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	11, 42
BseGI	GGATG	3 cut(s)	195, 745, 965
BseLI	CCNNNNNNNGG	3 cut(s)	581, 806, 913
BseMI	GCAATG	1 cut(s)	256
BseNI	ACTGG	4 cut(s)	172, 564, 637, 977
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	28, 419, 703, 910
BseYI	CCCAGC	1 cut(s)	879
BsgI	GTGCAG	3 cut(s)	426, 887, 957
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	29, 47, 172
BshNI	GGYRCC	2 cut(s)	596, 795
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	825
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	7 cut(s)	12, 48, 60, 73, 186, 233, 720
BslFI	GGGAC	3 cut(s)	666, 736, 890
BslI	CCNNNNNNNGG	3 cut(s)	581, 806, 913
BsmFI	GGGAC	3 cut(s)	666, 736, 890
BsnI	GGCC	3 cut(s)	29, 47, 172
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	12, 814, 825
Bsp143I	GATC	4 cut(s)	349, 419, 433, 644
BspACI	CCGC	4 cut(s)	25, 89, 285, 327
BspANI	GGCC	3 cut(s)	29, 47, 172
BspLI	GGNNCC	4 cut(s)	129, 468, 598, 797
BspMI	ACCTGC	1 cut(s)	389
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	357, 427
BspT107I	GGYRCC	2 cut(s)	596, 795
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	2 cut(s)	47, 59
BsrI	ACTGG	4 cut(s)	172, 564, 637, 977
BssAI	RCCGGY	2 cut(s)	47, 59
BssECI	CCNNGG	2 cut(s)	11, 42
BssMI	GATC	4 cut(s)	349, 419, 433, 644
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	8 cut(s)	79, 294, 301, 415, 625, 668, 827, 916
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	27, 453, 583, 587
BstDEI	CTNAG	2 cut(s)	440, 471
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	3 cut(s)	195, 745, 965
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	4 cut(s)	352, 422, 436, 647
BstMBI	GATC	4 cut(s)	349, 419, 433, 644
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 22, 404, 929
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	729
BstSCI	CCNGG	7 cut(s)	10, 11, 71, 114, 185, 232, 719
BstSFI	CTRYAG	2 cut(s)	788, 832
BstV1I	GCAGC	4 cut(s)	28, 419, 703, 910
BstV2I	GAAGAC	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	29, 47, 172
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	195, 745, 965
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	3 cut(s)	391, 557, 945
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	4 cut(s)	27, 453, 583, 587
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	618
Cfr10I	RCCGGY	2 cut(s)	47, 59
Cfr13I	GGNCC	2 cut(s)	27, 170
Cfr9I	CCCGGG	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	302, 597, 669
CviAII	CATG	4 cut(s)	141, 353, 521, 726
CviQI	GTAC	3 cut(s)	302, 597, 669
DdeI	CTNAG	2 cut(s)	440, 471
DpnI	GATC	4 cut(s)	351, 421, 435, 646
DpnII	GATC	4 cut(s)	349, 419, 433, 644
DraI	TTTAAA	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	12, 814
Eco47III	AGCGCT	1 cut(s)	617
Eco52I	CGGCCG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	12, 814
FaeI	CATG	4 cut(s)	144, 356, 524, 729
FaqI	GGGAC	3 cut(s)	666, 736, 890
FatI	CATG	4 cut(s)	140, 352, 520, 725
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
FokI	GGATG	3 cut(s)	202, 732, 952
FriOI	GRGCYC	2 cut(s)	12, 814
Fsp4HI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
FspBI	CTAG	2 cut(s)	452, 651
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
GsaI	CCCAGC	1 cut(s)	883
HaeII	RGCGCY	1 cut(s)	619
HaeIII	GGCC	3 cut(s)	29, 47, 172
HapII	CCGG	7 cut(s)	12, 48, 60, 73, 186, 233, 720
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	4 cut(s)	144, 356, 524, 729
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	4 cut(s)	106, 111, 771, 980
HpaII	CCGG	7 cut(s)	12, 48, 60, 73, 186, 233, 720
HphI	GGTGA	1 cut(s)	543
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	2 cut(s)	159, 970
Hpy188III	TCNNGA	5 cut(s)	103, 656, 763, 775, 984
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	2 cut(s)	159, 861
HpyAV	CCTTC	3 cut(s)	218, 776, 869
HpyCH4III	ACNGT	8 cut(s)	79, 294, 301, 415, 625, 668, 827, 916
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	6 cut(s)	407, 497, 581, 589, 868, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 22, 404, 929
HpyF3I	CTNAG	2 cut(s)	440, 471
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	144, 356, 524, 729
HspAI	GCGC	1 cut(s)	616
KpnI	GGTACC	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	349, 419, 433, 644
LmnI	GCTCC	3 cut(s)	127, 389, 931
Lsp1109I	GCAGC	4 cut(s)	28, 419, 703, 910
LweI	GCATC	2 cut(s)	28, 838
MaeI	CTAG	2 cut(s)	452, 651
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	79, 549, 940
MalI	GATC	4 cut(s)	351, 421, 435, 646
MboI	GATC	4 cut(s)	349, 419, 433, 644
MboII	GAAGA	5 cut(s)	17, 129, 327, 328, 428
MfeI	CAATTG	1 cut(s)	122
MhlI	GDGCHC	3 cut(s)	12, 814, 825
MluCI	AATT	3 cut(s)	122, 160, 900
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	4 cut(s)	137, 397, 506, 993
MnlI	CCTC	6 cut(s)	214, 239, 340, 483, 524, 786
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	5 cut(s)	53, 216, 362, 513, 612
MslI	CAYNNNNRTG	1 cut(s)	139
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	7 cut(s)	12, 48, 60, 73, 186, 233, 720
MspR9I	CCNGG	7 cut(s)	12, 13, 73, 116, 187, 234, 721
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	16, 22, 404, 929
NciI	CCSGG	6 cut(s)	12, 13, 73, 187, 234, 721
NdeII	GATC	4 cut(s)	349, 419, 433, 644
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	4 cut(s)	144, 356, 524, 729
NlaIV	GGNNCC	4 cut(s)	129, 468, 598, 797
NmuCI	GTSAC	2 cut(s)	549, 940
NspI	RCATGY	1 cut(s)	729
PciI	ACATGT	1 cut(s)	725
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	3 cut(s)	106, 111, 771
PflMI	CCANNNNNTGG	1 cut(s)	806
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	18, 90, 328, 409, 718, 925
PleI	GAGTC	1 cut(s)	988
PpsI	GAGTC	1 cut(s)	988
PscI	ACATGT	1 cut(s)	725
PsiI	TTATAA	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	129, 468, 598, 797
PspPI	GGNCC	2 cut(s)	27, 170
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	3 cut(s)	303, 598, 670
RsaNI	GTAC	3 cut(s)	302, 597, 669
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	53, 216, 362, 513, 612
SatI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
Sau3AI	GATC	4 cut(s)	349, 419, 433, 644
Sau96I	GGNCC	2 cut(s)	27, 170
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	7 cut(s)	12, 13, 73, 116, 187, 234, 721
SduI	GDGCHC	3 cut(s)	12, 814, 825
SfaNI	GCATC	2 cut(s)	28, 838
SfcI	CTRYAG	2 cut(s)	788, 832
SgrAI	CRCCGGYG	1 cut(s)	59
SmaI	CCCGGG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SrfI	GCCCGGGC	1 cut(s)	13
Sse9I	AATT	3 cut(s)	122, 160, 900
SsiI	CCGC	4 cut(s)	25, 89, 285, 327
SspMI	CTAG	2 cut(s)	452, 651
StyD4I	CCNGG	7 cut(s)	10, 11, 71, 114, 185, 232, 719
TaaI	ACNGT	8 cut(s)	79, 294, 301, 415, 625, 668, 827, 916
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	4 cut(s)	109, 504, 529, 814
TasI	AATT	3 cut(s)	122, 160, 900
TatI	WGTACW	2 cut(s)	301, 668
TauI	GCSGC	2 cut(s)	91, 329
TfiI	GAWTC	3 cut(s)	106, 111, 771
Tru1I	TTAA	5 cut(s)	53, 216, 362, 513, 612
Tru9I	TTAA	5 cut(s)	53, 216, 362, 513, 612
TscAI	CASTG	3 cut(s)	391, 564, 945
TseFI	GTSAC	2 cut(s)	549, 940
TseI	GCWGC	4 cut(s)	16, 407, 716, 923
Tsp45I	GTSAC	2 cut(s)	549, 940
TspDTI	ATGAA	2 cut(s)	129, 972
TspGWI	ACGGA	1 cut(s)	874
TspMI	CCCGGG	1 cut(s)	11
TspRI	CASTG	3 cut(s)	391, 564, 945
Van91I	CCANNNNNTGG	1 cut(s)	806
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	729
XmaI	CCCGGG	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	2 cut(s)	452, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.