Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Reverse (-)

24994527 .. 24997740

Gene Structure 3214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG115900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGTGATGCGGATTGGGAGTTCATTGCTGAGGAGGACGAACGATGTGAGGATCATGTTCATTTAAGTCCTTACTTGTCGTACATCAGTGGAGCATTAGCAGGTTGCGCGGCTACTATCGGATCATACCCGTTTGATCTTCTAAGAACCTTGCTAGCTTCACAGGGGGAACCTAAGGTGTATCCAACTATGAGGTCTGCATTTGTCGATATAGTTAAAACTCATGGATTTCGAGGATTGTATGCTGGATTGTCACCAACACTGGTTGAGATTGTTCCTTATGCAGGCTTGCAATTTGGTACCTATGACACATTTAAGCGCTGGACCATGATGTTGAACCAGTTTAGATCGTCTAGTGCAGACTTATACAGTACAGATAATAGTCTCACAAGCTTTCAGCTTTTCCTCTGTGGTCTAGCTGCTGGGACATGTGCCAAACTTGTCTGTCATCCATTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCACCGTGCCTACAACAATATGGTTGATGCTTTGCGACGAATAGTGCAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTCCCATCAACGGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

220

Amino Acids

24.38

Weight (kDa)

7.66

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	22 - 109	1.6e-23	Mitochondrial carrier protein
Mito_carr	PF00153	129 - 219	1.2e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	92
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	299, 498
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	1 cut(s)	110
AciI	CCGC	2 cut(s)	11, 110
AclWI	GGATC	2 cut(s)	60, 130
AfaI	GTAC	3 cut(s)	83, 301, 373
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	284, 509, 616
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	337, 485
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	6 cut(s)	158, 393, 400, 419, 626, 660
AluI	AGCT	6 cut(s)	158, 393, 400, 419, 626, 660
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	2 cut(s)	60, 130
Ama87I	CYCGRG	1 cut(s)	516
Aor51HI	AGCGCT	1 cut(s)	320
ApeKI	GCWGC	2 cut(s)	419, 626
Asp700I	GAANNNNTTC	1 cut(s)	473
Asp718I	GGTACC	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	110, 321
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	246
AsuNHI	GCTAGC	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	324
AxyI	CCTNAGG	1 cut(s)	174
BanI	GGYRCC	2 cut(s)	299, 498
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	528
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	406, 613
BccI	CCATC	1 cut(s)	619
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	3 cut(s)	155, 354, 416
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	3 cut(s)	111, 420, 627
BlsI	GCNGC	3 cut(s)	112, 421, 628
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	3 cut(s)	171, 301, 500
BmsI	GCATC	1 cut(s)	541
BmtI	GCTAGC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 509, 616
Bse1I	ACTGG	2 cut(s)	267, 340
Bse21I	CCTNAGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	3 cut(s)	284, 509, 616
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	267, 340
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	406, 613
BseYI	CCCAGC	2 cut(s)	422, 582
BsgI	GTGCAG	3 cut(s)	378, 590, 660
Bsh1236I	CGCG	1 cut(s)	110
BshNI	GGYRCC	2 cut(s)	299, 498
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	439, 593
BslI	CCNNNNNNNGG	3 cut(s)	284, 509, 616
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	2 cut(s)	439, 593
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	2 cut(s)	517, 528
Bsp143I	GATC	4 cut(s)	52, 122, 136, 347
BspACI	CCGC	2 cut(s)	11, 110
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	171, 301, 500
BspMI	ACCTGC	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	60, 130
BspT107I	GGYRCC	2 cut(s)	299, 498
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	267, 340
BssMI	GATC	4 cut(s)	52, 122, 136, 347
Bst4CI	ACNGT	3 cut(s)	371, 530, 619
BstC8I	GCNNGC	4 cut(s)	156, 286, 290, 658
BstDEI	CTNAG	3 cut(s)	30, 143, 174
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	2 cut(s)	110, 321
BstKTI	GATC	4 cut(s)	55, 125, 139, 350
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	4 cut(s)	52, 122, 136, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 632
BstNSI	RCATGY	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	491
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	406, 613
Bsu36I	CCTNAGG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	3 cut(s)	94, 260, 648
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	4 cut(s)	156, 286, 290, 658
CfoI	GCGC	2 cut(s)	110, 321
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	3 cut(s)	82, 300, 372
CviAII	CATG	4 cut(s)	56, 224, 328, 429
CviQI	GTAC	3 cut(s)	82, 300, 372
DdeI	CTNAG	3 cut(s)	30, 143, 174
DpnI	GATC	4 cut(s)	54, 124, 138, 349
DpnII	GATC	4 cut(s)	52, 122, 136, 347
Eco24I	GRGCYC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	324
Eco47III	AGCGCT	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	517
FaeI	CATG	4 cut(s)	59, 227, 331, 432
FaqI	GGGAC	2 cut(s)	439, 593
FatI	CATG	4 cut(s)	55, 223, 327, 428
Fnu4HI	GCNGC	3 cut(s)	111, 420, 627
FokI	GGATG	1 cut(s)	435
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	3 cut(s)	111, 420, 627
FspBI	CTAG	3 cut(s)	155, 354, 416
GlaI	GCGC	2 cut(s)	109, 320
GluI	GCNGC	3 cut(s)	111, 420, 627
GsaI	CCCAGC	2 cut(s)	426, 586
HaeII	RGCGCY	1 cut(s)	322
HhaI	GCGC	2 cut(s)	110, 321
Hin1II	CATG	4 cut(s)	59, 227, 331, 432
Hin6I	GCGC	2 cut(s)	108, 319
HinP1I	GCGC	2 cut(s)	108, 319
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	474
HphI	GGTGA	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	466, 478
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	2 cut(s)	479, 572
HpyCH4III	ACNGT	3 cut(s)	371, 530, 619
HpyCH4V	TGCA	6 cut(s)	200, 284, 292, 359, 571, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 632
HpyF3I	CTNAG	3 cut(s)	30, 143, 174
Hsp92II	CATG	4 cut(s)	59, 227, 331, 432
HspAI	GCGC	2 cut(s)	108, 319
KpnI	GGTACC	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	52, 122, 136, 347
LmnI	GCTCC	2 cut(s)	92, 634
Lsp1109I	GCAGC	2 cut(s)	406, 613
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	3 cut(s)	155, 354, 416
MaeIII	GTNAC	2 cut(s)	252, 643
MalI	GATC	4 cut(s)	54, 124, 138, 349
MboI	GATC	4 cut(s)	52, 122, 136, 347
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	517, 528
MluCI	AATT	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	25, 28, 43, 186, 227, 416, 489
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	65, 216, 315
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	107, 632
NdeII	GATC	4 cut(s)	52, 122, 136, 347
NheI	GCTAGC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	59, 227, 331, 432
NlaIV	GGNNCC	3 cut(s)	171, 301, 500
NmuCI	GTSAC	2 cut(s)	252, 643
NspI	RCATGY	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	516
PciI	ACATGT	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	474
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	112, 421, 628
PscI	ACATGT	1 cut(s)	428
PsiI	TTATAA	1 cut(s)	597
PspFI	CCCAGC	2 cut(s)	422, 582
PspN4I	GGNNCC	3 cut(s)	171, 301, 500
PspPI	GGNCC	1 cut(s)	324
PspXI	VCTCGAGB	1 cut(s)	516
RsaI	GTAC	3 cut(s)	83, 301, 373
RsaNI	GTAC	3 cut(s)	82, 300, 372
SaqAI	TTAA	3 cut(s)	65, 216, 315
SatI	GCNGC	3 cut(s)	111, 420, 627
Sau3AI	GATC	4 cut(s)	52, 122, 136, 347
Sau96I	GGNCC	1 cut(s)	324
SduI	GDGCHC	2 cut(s)	517, 528
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	491
Sfr274I	CTCGAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	11, 110
SspMI	CTAG	3 cut(s)	155, 354, 416
TaaI	ACNGT	3 cut(s)	371, 530, 619
TaqI	TCGA	3 cut(s)	207, 232, 517
TasI	AATT	1 cut(s)	293
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	3 cut(s)	65, 216, 315
Tru9I	TTAA	3 cut(s)	65, 216, 315
TscAI	CASTG	3 cut(s)	94, 267, 648
TseFI	GTSAC	2 cut(s)	252, 643
TseI	GCWGC	2 cut(s)	419, 626
Tsp45I	GTSAC	2 cut(s)	252, 643
TspDTI	ATGAA	2 cut(s)	13, 50
TspRI	CASTG	3 cut(s)	94, 267, 648
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	282
XceI	RCATGY	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	3 cut(s)	155, 354, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.