Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007272

Physical Location & Seq

Genomic Coordinates Forward (+)

10806260 .. 10809963

Gene Structure 3704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G138100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAAGAGACAGGGCAGCTCAAGCGAGCTTTCATTGATGCTACAGCGGGTTTAATCGCGGGTGGTATATCGCGAACAGTTACATCGCCGCTCGACGTTATTAAGATTAGATTCCAGGTTCAACTGGAGCCCACCACTTCATGGGCTTTGCTTCGTAAAAATTTGTCTCAACCGTCAAAATATACTGGGATGTTGCAGGCAACAAGGGATATTTTCAGAGAGGAAGGCTTACCGGGCTTTTGGCGTGGCAATGTCCCAGCTCTACTTATGGTTATGCCGTATACCGCTATACAATTTGCTGTGTTACACCAGTTGAAAACATTTGCTGCTGGTTCCTCCAAGACAGAGGATCACATATATTTGAGTCCTTATTTGTCTTACATCAGTGGAGCATTAGCAGGTTGTGCAGCCACTGTCGGATCATATCCATTTGATCTTCTAAGAACCTTATTAGCTTCACAGGGCGAACCTAAGGTGTATCCAACTATGAGGACTGCATTGGTGGAAATAGTTAAAACTCGTGGATTTCGAGGATTGTATGCTGGATTGTCGCCAACACTGGTTGAGATTATTCCTTATGCAGGCTTGCAATTTGGTACATATGACACGTTTAAGCGCTGGACCATGACATGGAACCTGTATAGATCCTCCAATACAAACTTACAAAGTAGAGAAGATGGTCTCTCAAGCTTTCAGCTTTTCCTCTGTGGTCTAGCAGCTGGGACATGTGCCAAACTTGTCTGTCATCCACTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCATCGTGCTTACCGAAACATGTTTGATGCCTTGCGAAGAATATTGCAGAAGGAGGGCTGGGCTGGTCTTTATAAGGGAATAGTTCCATCGACGGTCAAGGCCGCTCCTGCTGGCGCTGTAACATTTGTGGCTTATGAATATACATCAGACTGGTTAGAGTCTGCATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

332

Amino Acids

36.82

Weight (kDa)

9.53

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21390 AT3G21390 AT5G48970 AT5G48970
fragaria_vesca	FvH4_4g17870
malus_domestica	MD16G1171300.v1.1
prunus_persica	Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1 Prupe.1G138100_v2.0.a1
pyrus_communis	pycom16g14360
rosa_chinensis	RchiOBHm_Chr2g0110421 RchiOBHm_Chr4g0421981
rosa_laevigata	RLG00000007648
rosa_multiflora	Rmu_sc0008440.1_g000015 Rmu_sc0012856.1_g000003 Rmu_sc0020808.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324100 Rroxscaffold_5G00364070
rosa_rugosa	Rorug04G0176700
rosa_samantha	Rh2CG221100 Rh4AG115900 Rh4CG250400 Rh4DG234500
rosa_wichuraiana	Rw1G007870 Rw4G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	795
AccB7I	CCANNNNNTGG	3 cut(s)	141, 630, 806
AccBSI	CCGCTC	2 cut(s)	91, 926
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	2 cut(s)	59, 73
AciI	CCGC	5 cut(s)	47, 59, 89, 285, 924
AclWI	GGATC	3 cut(s)	357, 427, 639
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	1 cut(s)	598
AfeI	AGCGCT	1 cut(s)	617
AfiI	CCNNNNNNNGG	4 cut(s)	141, 581, 630, 806
AflIII	ACRYGT	3 cut(s)	606, 725, 840
AgsI	TTSAA	3 cut(s)	122, 316, 782
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	7 cut(s)	19, 29, 260, 455, 690, 697, 719
AluI	AGCT	7 cut(s)	19, 29, 260, 455, 690, 697, 719
Alw26I	GTCTC	3 cut(s)	2, 171, 686
AlwI	GGATC	3 cut(s)	357, 427, 639
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	813
Aor51HI	AGCGCT	1 cut(s)	617
AoxI	GGCC	1 cut(s)	921
ApeKI	GCWGC	4 cut(s)	16, 326, 407, 716
ApoI	RAATTY	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	770
AspLEI	GCGC	2 cut(s)	618, 938
AspS9I	GGNCC	1 cut(s)	621
AsuC2I	CCSGG	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	813
AvaII	GGWCC	1 cut(s)	621
AxyI	CCTNAGG	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	795
BanII	GRGCYC	2 cut(s)	132, 814
BauI	CACGAG	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	28, 313, 419, 728
BccI	CCATC	2 cut(s)	671, 916
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	2, 171, 686
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	2 cut(s)	42, 788
BfoI	RGCGCY	2 cut(s)	619, 939
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
BlsI	GCNGC	6 cut(s)	18, 90, 328, 409, 718, 925
Bme1390I	CCNGG	2 cut(s)	116, 234
Bme18I	GGWCC	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	4 cut(s)	129, 334, 635, 797
BmrFI	CCNGG	2 cut(s)	116, 234
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	28, 832, 838
BmuI	ACTGGG	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	5, 670
BpuMI	CCSGG	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 581, 630, 806
Bse1I	ACTGG	5 cut(s)	129, 190, 310, 564, 977
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	195, 745
BseLI	CCNNNNNNNGG	4 cut(s)	141, 581, 630, 806
BseMI	GCAATG	1 cut(s)	256
BseNI	ACTGG	5 cut(s)	129, 190, 310, 564, 977
BseXI	GCAGC	4 cut(s)	28, 313, 419, 728
BseYI	CCCAGC	3 cut(s)	256, 719, 879
BsgI	GTGCAG	1 cut(s)	426
Bsh1236I	CGCG	2 cut(s)	59, 73
BshFI	GGCC	1 cut(s)	923
BshNI	GGYRCC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	813
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	2 cut(s)	239, 736
BslI	CCNNNNNNNGG	4 cut(s)	141, 581, 630, 806
BsmAI	GTCTC	3 cut(s)	2, 171, 686
BsmFI	GGGAC	2 cut(s)	239, 736
BsnI	GGCC	1 cut(s)	923
Bso31I	GGTCTC	1 cut(s)	686
BsoBI	CYCGRG	1 cut(s)	813
Bsp1286I	GDGCHC	2 cut(s)	132, 814
Bsp143I	GATC	4 cut(s)	349, 419, 433, 644
Bsp68I	TCGCGA	1 cut(s)	73
BspACI	CCGC	5 cut(s)	47, 59, 89, 285, 924
BspANI	GGCC	1 cut(s)	923
BspFNI	CGCG	2 cut(s)	59, 73
BspLI	GGNNCC	4 cut(s)	129, 334, 635, 797
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	3 cut(s)	357, 427, 639
BspT107I	GGYRCC	1 cut(s)	795
BspTNI	GGTCTC	1 cut(s)	686
BsrBI	CCGCTC	2 cut(s)	91, 926
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	5 cut(s)	129, 190, 310, 564, 977
BssMI	GATC	4 cut(s)	349, 419, 433, 644
BssNAI	GTATAC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	519
Bst1107I	GTATAC	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	4 cut(s)	79, 174, 415, 916
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	5 cut(s)	27, 198, 583, 587, 934
BstDEI	CTNAG	2 cut(s)	440, 471
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	2 cut(s)	195, 745
BstFNI	CGCG	2 cut(s)	59, 73
BstH2I	RGCGCY	2 cut(s)	619, 939
BstHHI	GCGC	2 cut(s)	618, 938
BstKTI	GATC	4 cut(s)	352, 422, 436, 647
BstMAI	GTCTC	3 cut(s)	2, 171, 686
BstMBI	GATC	4 cut(s)	349, 419, 433, 644
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 234, 404, 929
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	2 cut(s)	729, 844
BstSCI	CCNGG	2 cut(s)	114, 232
BstSFI	CTRYAG	2 cut(s)	42, 788
BstUI	CGCG	2 cut(s)	59, 73
BstV1I	GCAGC	4 cut(s)	28, 313, 419, 728
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BstZ17I	GTATAC	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	923
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	195, 745
BtsIMutI	CAGTG	3 cut(s)	391, 411, 557
BtuMI	TCGCGA	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	5 cut(s)	27, 198, 583, 587, 934
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	2 cut(s)	618, 938
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	5 cut(s)	141, 625, 630, 726, 841
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	2 cut(s)	440, 471
DpnI	GATC	4 cut(s)	351, 421, 435, 646
DpnII	GATC	4 cut(s)	349, 419, 433, 644
Eco24I	GRGCYC	2 cut(s)	132, 814
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	1 cut(s)	621
Eco47III	AGCGCT	1 cut(s)	617
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	813
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	132, 814
FaeI	CATG	5 cut(s)	144, 628, 633, 729, 844
FaqI	GGGAC	2 cut(s)	239, 736
FatI	CATG	5 cut(s)	140, 624, 629, 725, 840
FauI	CCCGC	2 cut(s)	40, 52
FauNDI	CATATG	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
FokI	GGATG	2 cut(s)	202, 732
FriOI	GRGCYC	2 cut(s)	132, 814
Fsp4HI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	2 cut(s)	617, 937
GluI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
GsaI	CCCAGC	3 cut(s)	260, 723, 883
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	2 cut(s)	619, 939
HaeIII	GGCC	1 cut(s)	923
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	2 cut(s)	618, 938
Hin1II	CATG	5 cut(s)	144, 628, 633, 729, 844
Hin6I	GCGC	2 cut(s)	616, 936
HinP1I	GCGC	2 cut(s)	616, 936
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	4 cut(s)	111, 364, 771, 980
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	3 cut(s)	218, 419, 970
Hpy188III	TCNNGA	3 cut(s)	72, 763, 775
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	2 cut(s)	98, 916
HpyAV	CCTTC	3 cut(s)	218, 776, 865
HpyCH4III	ACNGT	4 cut(s)	79, 174, 415, 916
HpyCH4IV	ACGT	2 cut(s)	96, 608
HpyCH4V	TGCA	7 cut(s)	196, 407, 497, 581, 589, 868, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 234, 404, 929
HpyF3I	CTNAG	2 cut(s)	440, 471
HpySE526I	ACGT	2 cut(s)	96, 608
Hsp92II	CATG	5 cut(s)	144, 628, 633, 729, 844
HspAI	GCGC	2 cut(s)	616, 936
Kzo9I	GATC	4 cut(s)	349, 419, 433, 644
LmnI	GCTCC	3 cut(s)	127, 389, 931
Lsp1109I	GCAGC	4 cut(s)	28, 313, 419, 728
LweI	GCATC	3 cut(s)	28, 832, 838
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	2 cut(s)	96, 608
MaeIII	GTNAC	3 cut(s)	79, 303, 940
MalI	GATC	4 cut(s)	351, 421, 435, 646
MbiI	CCGCTC	2 cut(s)	91, 926
MboI	GATC	4 cut(s)	349, 419, 433, 644
MboII	GAAGA	4 cut(s)	17, 428, 686, 870
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	2 cut(s)	132, 814
MluCI	AATT	3 cut(s)	160, 293, 590
MlyI	GAGTC	2 cut(s)	373, 989
MmeI	TCCRAC	2 cut(s)	397, 506
MnlI	CCTC	9 cut(s)	214, 340, 346, 483, 524, 658, 713, 786, 868
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	4 cut(s)	53, 102, 513, 612
MspA1I	CMGCKG	2 cut(s)	47, 719
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	116, 234
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	2 cut(s)	59, 73
MwoI	GCNNNNNNNGC	4 cut(s)	22, 234, 404, 929
NciI	CCSGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	4 cut(s)	349, 419, 433, 644
NlaIII	CATG	5 cut(s)	144, 628, 633, 729, 844
NlaIV	GGNNCC	4 cut(s)	129, 334, 635, 797
NruI	TCGCGA	1 cut(s)	73
NspI	RCATGY	2 cut(s)	729, 844
PaeR7I	CTCGAG	1 cut(s)	813
PciI	ACATGT	2 cut(s)	725, 840
PcsI	WCGNNNNNNNCGW	2 cut(s)	526, 832
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	2 cut(s)	111, 771
PflMI	CCANNNNNTGG	3 cut(s)	141, 630, 806
PkrI	GCNGC	6 cut(s)	18, 90, 328, 409, 718, 925
PleI	GAGTC	2 cut(s)	372, 988
PpsI	GAGTC	2 cut(s)	372, 988
PscI	ACATGT	2 cut(s)	725, 840
PsiI	TTATAA	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	3 cut(s)	256, 719, 879
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	129, 334, 635, 797
PspPI	GGNCC	1 cut(s)	621
PspXI	VCTCGAGB	1 cut(s)	813
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	719
RruI	TCGCGA	1 cut(s)	73
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
SaqAI	TTAA	4 cut(s)	53, 102, 513, 612
SatI	GCNGC	6 cut(s)	17, 89, 327, 408, 717, 924
Sau3AI	GATC	4 cut(s)	349, 419, 433, 644
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	2 cut(s)	373, 989
ScrFI	CCNGG	2 cut(s)	116, 234
SduI	GDGCHC	2 cut(s)	132, 814
SfaNI	GCATC	3 cut(s)	28, 832, 838
SfcI	CTRYAG	2 cut(s)	42, 788
Sfr274I	CTCGAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	621
SlaI	CTCGAG	1 cut(s)	813
SmlI	CTYRAG	3 cut(s)	20, 685, 813
SmoI	CTYRAG	3 cut(s)	20, 685, 813
Sse9I	AATT	3 cut(s)	160, 293, 590
SsiI	CCGC	5 cut(s)	47, 59, 89, 285, 924
SspI	AATATT	1 cut(s)	864
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	2 cut(s)	114, 232
TaaI	ACNGT	4 cut(s)	79, 174, 415, 916
TaiI	ACGT	2 cut(s)	99, 611
TaqI	TCGA	4 cut(s)	93, 529, 814, 911
TasI	AATT	3 cut(s)	160, 293, 590
TauI	GCSGC	2 cut(s)	91, 926
TfiI	GAWTC	2 cut(s)	111, 771
Tru1I	TTAA	4 cut(s)	53, 102, 513, 612
Tru9I	TTAA	4 cut(s)	53, 102, 513, 612
TscAI	CASTG	3 cut(s)	391, 418, 564
TseI	GCWGC	4 cut(s)	16, 326, 407, 716
TspDTI	ATGAA	3 cut(s)	22, 129, 972
TspRI	CASTG	3 cut(s)	391, 418, 564
Van91I	CCANNNNNTGG	3 cut(s)	141, 630, 806
VpaK11BI	GGWCC	1 cut(s)	621
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	2 cut(s)	729, 844
XhoI	CTCGAG	1 cut(s)	813
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.