Rorug04G0176700
ERF Family

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
31043502 .. 31048077
4576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0176700.1

Sequence Viewer

Length: 789 bp
ATGGAGGCCACGATGCCTATTTGCAAGACTGATACTCCAACTCCGGATAAGAAGATGCTGAGTTCCACCCAACGCTTGATTGCATTTGCTTTACTTCATCAGGCTTATGCTTCCCAGGAACCTTCCGTGAATCCCTTCATAAATTTGATTATAAGTCTGGAGCTAGATGTTGCTGGAAGACATAAAGAGAAGTGTAAAGCTCAACCTGTGAAGAATAAATTGTCAAAAACCCAACGTACTATACAAGATTCTGAAGAAAATAGGAGCTCAAATGCTTTAAGTACTGGTCACAGTAGTTCCAGTATATTAGACCAAGGGCAGTCTCCCGTGGATGACACAGGCATATCTTCAGCATCACCTATATGTCCAGCACCATTTGTCGGCAATTTTGGAAAGCTGGGAACTACAATGATGGCCTCGGTTCTAAAGCTACATTTCAAAAACTCCTTGACAATGCAGTTGATGAGGACATTGACTCAAAGCATTGGTCTTCTCTCTTACACGTTTTTGGCACAAACAGGACATGATAGAATAGTAGTACCGATGGTGGATTACGAATTCAACCCTACAACTGAGACATTAGATATAATGCATGGCAGAGAACATTTTATGTCTAATCTCTCCTTGTTGCTACAGTGGTCTCCTTATTCAACAGAGGCTGAGCTACTGAAACAAGTCAATGAAGCATCCAACTATACCCAAAGTTCCATATCCCCCAACATAAGAAGATCAAGTGCTGCTTGTCATGGAATTGTGATGAGCTCCTACTCTTGTCAAAGTGAAGCTTGA

Protein Analysis

262

Amino Acids

28.79

Weight (kDa)

6.7

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 43
AcsI RAATTY 2 cut(s) 142, 557
AcuI CTGAAG 2 cut(s) 273, 333
AfaI GTAC 3 cut(s) 238, 283, 540
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 3 cut(s) 439, 562, 651
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 8 cut(s) 163, 200, 267, 397, 430, 664, 762, 785
AluI AGCT 8 cut(s) 163, 200, 267, 397, 430, 664, 762, 785
Alw21I GWGCWC 2 cut(s) 269, 764
Alw26I GTCTC 3 cut(s) 327, 569, 645
AlwNI CAGNNNCTG 1 cut(s) 659
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 2 cut(s) 6, 414
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 2 cut(s) 142, 557
ArsI GACNNNNNNTTYG 2 cut(s) 472, 504
Asp700I GAANNNNTTC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 348
BanII GRGCYC 2 cut(s) 269, 764
BbsI GAAGAC 2 cut(s) 184, 482
Bbv12I GWGCWC 2 cut(s) 269, 764
BbvI GCAGC 1 cut(s) 724
BccI CCATC 2 cut(s) 406, 538
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 3 cut(s) 327, 569, 645
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 632
BisI GCNGC 1 cut(s) 738
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 739
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 4 cut(s) 3, 45, 362, 695
BpiI GAAGAC 2 cut(s) 184, 482
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 660
BsaI GGTCTC 1 cut(s) 645
BsaJI CCNNGG 4 cut(s) 114, 313, 327, 417
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 19, 25, 49, 55
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 289, 300
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 4 cut(s) 114, 313, 327, 417
BseGI GGATG 2 cut(s) 337, 686
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 3 cut(s) 50, 564, 651
BseNI ACTGG 2 cut(s) 289, 300
BseXI GCAGC 1 cut(s) 724
BseYI CCCAGC 1 cut(s) 397
BshFI GGCC 2 cut(s) 8, 416
BsiHKAI GWGCWC 2 cut(s) 269, 764
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 3 cut(s) 327, 569, 645
BsnI GGCC 2 cut(s) 8, 416
Bso31I GGTCTC 1 cut(s) 645
Bsp1286I GDGCHC 2 cut(s) 269, 764
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 1 cut(s) 728
Bsp1720I GCTNAGC 1 cut(s) 660
BspANI GGCC 2 cut(s) 8, 416
BspCNI CTCAG 3 cut(s) 51, 565, 652
BspEI TCCGGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 645
BsrI ACTGG 2 cut(s) 289, 300
BssECI CCNNGG 4 cut(s) 114, 313, 327, 417
BssMI GATC 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 293, 636
BstDEI CTNAG 3 cut(s) 59, 573, 660
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 337, 686
BstKTI GATC 1 cut(s) 731
BstMAI GTCTC 3 cut(s) 327, 569, 645
BstMBI GATC 1 cut(s) 728
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 724
BstV2I GAAGAC 2 cut(s) 184, 482
BsuRI GGCC 2 cut(s) 8, 416
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 337, 686
BtsIMutI CAGTG 1 cut(s) 641
CaiI CAGNNNCTG 1 cut(s) 659
Csp6I GTAC 3 cut(s) 237, 282, 539
CviAII CATG 3 cut(s) 524, 593, 746
CviQI GTAC 3 cut(s) 237, 282, 539
DdeI CTNAG 3 cut(s) 59, 573, 660
DpnI GATC 1 cut(s) 730
DpnII GATC 1 cut(s) 728
Ecl136II GAGCTC 2 cut(s) 267, 762
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 2 cut(s) 269, 764
Eco31I GGTCTC 1 cut(s) 645
Eco53kI GAGCTC 2 cut(s) 267, 762
Eco57I CTGAAG 2 cut(s) 273, 333
EcoICRI GAGCTC 2 cut(s) 267, 762
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 594
EcoT38I GRGCYC 2 cut(s) 269, 764
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 3 cut(s) 527, 596, 749
FalI AAGNNNNNCTT 3 cut(s) 724, 756, 769
FatI CATG 3 cut(s) 523, 592, 745
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 2 cut(s) 344, 673
FriOI GRGCYC 2 cut(s) 269, 764
Fsp4HI GCNGC 1 cut(s) 738
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 738
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 8, 416
HapII CCGG 1 cut(s) 44
Hin1II CATG 3 cut(s) 527, 596, 749
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 3 cut(s) 130, 248, 475
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 44, 158
HpyAV CCTTC 2 cut(s) 132, 145
HpyCH4III ACNGT 2 cut(s) 293, 636
HpyCH4IV ACGT 2 cut(s) 235, 503
HpyCH4V TGCA 4 cut(s) 24, 83, 457, 592
HpyF3I CTNAG 3 cut(s) 59, 573, 660
HpySE526I ACGT 2 cut(s) 235, 503
Hsp92II CATG 3 cut(s) 527, 596, 749
Kpn2I TCCGGA 1 cut(s) 43
Kzo9I GATC 1 cut(s) 728
LmnI GCTCC 3 cut(s) 160, 264, 767
Lsp1109I GCAGC 1 cut(s) 724
LweI GCATC 4 cut(s) 3, 45, 362, 695
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 235, 503
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 730
MboI GATC 1 cut(s) 728
MboII GAAGA 7 cut(s) 64, 189, 223, 266, 339, 482, 738
MhlI GDGCHC 2 cut(s) 269, 764
MluCI AATT 5 cut(s) 142, 218, 385, 557, 750
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 2 cut(s) 62, 714
MnlI CCTC 3 cut(s) 427, 459, 649
Mph1103I ATGCAT 1 cut(s) 594
MroI TCCGGA 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 361
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
NdeII GATC 1 cut(s) 728
NlaIII CATG 3 cut(s) 527, 596, 749
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 130, 248
PkrI GCNGC 1 cut(s) 739
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PsiI TTATAA 1 cut(s) 152
Psp124BI GAGCTC 2 cut(s) 269, 764
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 659
RsaI GTAC 3 cut(s) 238, 283, 540
RsaNI GTAC 3 cut(s) 237, 282, 539
RseI CAYNNNNRTG 1 cut(s) 361
SacI GAGCTC 2 cut(s) 269, 764
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 1 cut(s) 728
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 2 cut(s) 269, 764
SfaNI GCATC 4 cut(s) 3, 45, 362, 695
SfcI CTRYAG 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 361
Sse9I AATT 5 cut(s) 142, 218, 385, 557, 750
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 2 cut(s) 269, 764
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 293, 636
TaiI ACGT 2 cut(s) 238, 506
TasI AATT 5 cut(s) 142, 218, 385, 557, 750
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 2 cut(s) 130, 248
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 641
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 86, 127, 696
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 641
XapI RAATTY 2 cut(s) 142, 557
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.