Rw0G017200
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00766
OG0000263
Physical Location & Seq
Forward (+)
3234 .. 4212
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017200.1

Sequence Viewer

Length: 945 bp
ATGAAGGTACGCTTCGACACCCCAGAAAAACCCGACTCTGTTATTAAGCTTTTTAAAGACTATGGACTCAGTGATGCCCACATCTCTGACATTGTTAAGAAATGCCCAGTTTTGCTTGTATCCAATGCTGAAAAGACCCTTTGGCCAAAACTCCAGTTTTTCACTTCCATTGGCCTTTCGGGCAATGACCTTGCCCGGATCTTCCGTAGAAGTATTAGACCTTGTTATGATATTATGAAAACTCTAGAAATACCTGAGCATAAGGTCCCTTATTTCATTAGCAACTATTATATGTTTAACCCCAAAGTATTGAGCAATGTACCTCACAACACTTTGATTCTGAGAGCGCATCAGGTGCCAGAAGCGTCATTTCCTCTGTGGGTGTGTTCTCATTTGCTTGCACTGTCATTTGACTCTGAGAAGGTTAAGACAAATGTCGAGAAGGTCATCAGCATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCTTTGTATGTGGTATCGGTGACCAATGCAGCAAAGTGGAAACACAAGATGGAATTTTATGAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTGTGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAATAAAATGGGTTGCCAGCCTGCAGATCTGGCTGCACGTCCAGATATTCTGACTTATAGTTTGGAGAAGCAAATCATACCTAGGTGTTCAGTCATCAGATTTCTCCAGTTAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCATTGTGCACAAAAACGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAATTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGCCGAATTTGGTTTAGGATTCGACGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

314

Amino Acids

36.19

Weight (kDa)

8.88

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 15 - 69 1.8e-07 mTERF
mTERF PF02536 135 - 278 1.3e-15 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 355
AccI GTMKAC 1 cut(s) 473
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 542, 914
AcuI CTGAAG 2 cut(s) 588, 601
AfaI GTAC 2 cut(s) 9, 321
AfiI CCNNNNNNNGG 1 cut(s) 769
AgsI TTSAA 1 cut(s) 658
AhdI GACNNNNNGTC 1 cut(s) 469
AjiI CACGTC 1 cut(s) 695
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 4 cut(s) 49, 491, 615, 638
AluI AGCT 4 cut(s) 49, 491, 615, 638
Alw21I GWGCWC 1 cut(s) 816
Alw44I GTGCAC 1 cut(s) 812
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 143, 172
ApaLI GTGCAC 1 cut(s) 812
ApeKI GCWGC 2 cut(s) 518, 689
ApoI RAATTY 2 cut(s) 542, 914
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
Asp700I GAANNNNTTC 1 cut(s) 830
AspA2I CCTAGG 1 cut(s) 737
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 265
AvrII CCTAGG 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 816
BalI TGGCCA 1 cut(s) 145
BanI GGYRCC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 530, 676
BccI CCATC 1 cut(s) 532
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 1 cut(s) 849
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 3 cut(s) 245, 738, 908
BfmI CTRYAG 1 cut(s) 678
BfuI GTATCC 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 180
BglII AGATCT 1 cut(s) 682
BisI GCNGC 2 cut(s) 519, 690
BlnI CCTAGG 1 cut(s) 737
BlsI GCNGC 2 cut(s) 520, 691
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 265
BmeRI GACNNNNNGTC 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 695
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 267, 357
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 3 cut(s) 64, 358, 894
BmuI ACTGGG 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 434
BpmI CTGGAG 2 cut(s) 137, 746
Bpu10I CCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 737
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse1I ACTGG 3 cut(s) 107, 154, 763
Bse3DI GCAATG 2 cut(s) 190, 322
BseDI CCNNGG 1 cut(s) 737
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMI GCAATG 2 cut(s) 190, 322
BseMII CTCAG 4 cut(s) 82, 246, 332, 408
BseNI ACTGG 3 cut(s) 107, 154, 763
BseSI GKGCMC 1 cut(s) 816
BseXI GCAGC 2 cut(s) 530, 676
BsgI GTGCAG 1 cut(s) 675
BshFI GGCC 2 cut(s) 145, 174
BshNI GGYRCC 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 769
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 145, 174
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 3 cut(s) 198, 682, 849
BspANI GGCC 2 cut(s) 145, 174
BspCNI CTCAG 4 cut(s) 81, 247, 333, 409
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 267, 357
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 355
BsrDI GCAATG 2 cut(s) 190, 322
BsrI ACTGG 3 cut(s) 107, 154, 763
BssECI CCNNGG 1 cut(s) 737
BssMI GATC 3 cut(s) 198, 682, 849
BssT1I CCWWGG 1 cut(s) 737
Bst4CI ACNGT 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 399, 674, 678
BstDEI CTNAG 4 cut(s) 68, 255, 341, 417
BstEII GGTNACC 1 cut(s) 508
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 3 cut(s) 201, 685, 852
BstMBI GATC 3 cut(s) 198, 682, 849
BstMWI GCNNNNNNNGC 3 cut(s) 180, 355, 686
BstPAI GACNNNNGTC 1 cut(s) 434
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 678
BstSLI GKGCMC 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 530, 676
BstX2I RGATCY 2 cut(s) 198, 682
BstYI RGATCY 2 cut(s) 198, 682
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 145, 174
BtrI CACGTC 1 cut(s) 695
BtsIMutI CAGTG 3 cut(s) 76, 401, 625
Cac8I GCNNGC 3 cut(s) 399, 674, 678
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 354
Csp6I GTAC 2 cut(s) 8, 320
CviAII CATG 3 cut(s) 454, 484, 604
CviQI GTAC 2 cut(s) 8, 320
DdeI CTNAG 4 cut(s) 68, 255, 341, 417
DpnI GATC 3 cut(s) 200, 684, 851
DpnII GATC 3 cut(s) 198, 682, 849
DraI TTTAAA 1 cut(s) 55
DriI GACNNNNNGTC 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 588, 601
Eco91I GGTNACC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 737
ErhI CCWWGG 1 cut(s) 737
FaeI CATG 3 cut(s) 457, 487, 607
FalI AAGNNNNNCTT 3 cut(s) 28, 818, 850
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 453, 483, 603
FbaI TGATCA 1 cut(s) 849
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 2 cut(s) 519, 690
Fsp4HI GCNGC 2 cut(s) 519, 690
FspBI CTAG 3 cut(s) 245, 738, 908
GlaI GCGC 1 cut(s) 348
GluI GCNGC 2 cut(s) 519, 690
GsuI CTGGAG 2 cut(s) 137, 746
HaeIII GGCC 2 cut(s) 145, 174
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 354
HhaI GCGC 1 cut(s) 349
Hin1II CATG 3 cut(s) 457, 487, 607
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HindIII AAGCTT 2 cut(s) 47, 489
HinfI GANTC 6 cut(s) 35, 66, 337, 413, 598, 927
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 2 cut(s) 474, 814
Hpy188I TCNGA 5 cut(s) 88, 342, 418, 708, 755
Hpy188III TCNNGA 4 cut(s) 245, 439, 484, 698
Hpy8I GTNNAC 2 cut(s) 474, 814
Hpy99I CGWCG 1 cut(s) 935
HpyAV CCTTC 3 cut(s) 415, 436, 477
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 6 cut(s) 401, 518, 680, 692, 814, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 355, 686
HpyF3I CTNAG 4 cut(s) 68, 255, 341, 417
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 3 cut(s) 457, 487, 607
HspAI GCGC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 3 cut(s) 198, 682, 849
Lsp1109I GCAGC 2 cut(s) 530, 676
LweI GCATC 3 cut(s) 64, 358, 894
MaeI CTAG 3 cut(s) 245, 738, 908
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 1 cut(s) 508
MalI GATC 3 cut(s) 200, 684, 851
MboI GATC 3 cut(s) 198, 682, 849
MboII GAAGA 5 cut(s) 193, 581, 637, 800, 872
MflI RGATCY 2 cut(s) 198, 682
MhlI GDGCHC 1 cut(s) 816
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 5 cut(s) 542, 777, 801, 875, 914
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 3 cut(s) 29, 60, 407
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 2 cut(s) 333, 384
Mox20I TGGCCA 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 830
MscI TGGCCA 1 cut(s) 145
MseI TTAA 7 cut(s) 45, 54, 96, 297, 426, 767, 776
MslI CAYNNNNRTG 2 cut(s) 452, 608
Msp20I TGGCCA 1 cut(s) 145
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 180, 355, 686
NciI CCSGG 1 cut(s) 196
NdeII GATC 3 cut(s) 198, 682, 849
NlaIII CATG 3 cut(s) 457, 487, 607
NlaIV GGNNCC 2 cut(s) 267, 357
NmuCI GTSAC 1 cut(s) 508
PagI TCATGA 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 3 cut(s) 337, 598, 927
PkrI GCNGC 2 cut(s) 520, 691
PleI GAGTC 3 cut(s) 29, 60, 407
PpsI GAGTC 3 cut(s) 29, 60, 407
PpuMI RGGWCCY 1 cut(s) 265
PshAI GACNNNNGTC 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 265
PspEI GGTNACC 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 267, 357
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PstI CTGCAG 1 cut(s) 682
PsuI RGATCY 2 cut(s) 198, 682
RsaI GTAC 2 cut(s) 9, 321
RsaNI GTAC 2 cut(s) 8, 320
RseI CAYNNNNRTG 2 cut(s) 452, 608
SaqAI TTAA 7 cut(s) 45, 54, 96, 297, 426, 767, 776
SatI GCNGC 2 cut(s) 519, 690
Sau3AI GATC 3 cut(s) 198, 682, 849
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 3 cut(s) 29, 60, 407
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 3 cut(s) 64, 358, 894
SfcI CTRYAG 1 cut(s) 678
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 452, 608
Sse9I AATT 5 cut(s) 542, 777, 801, 875, 914
SspI AATATT 1 cut(s) 631
SspMI CTAG 3 cut(s) 245, 738, 908
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 737
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 1 cut(s) 697
TaqI TCGA 3 cut(s) 15, 438, 930
TasI AATT 5 cut(s) 542, 777, 801, 875, 914
TfiI GAWTC 3 cut(s) 337, 598, 927
Tru1I TTAA 7 cut(s) 45, 54, 96, 297, 426, 767, 776
Tru9I TTAA 7 cut(s) 45, 54, 96, 297, 426, 767, 776
TscAI CASTG 3 cut(s) 76, 408, 625
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 2 cut(s) 518, 689
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 6 cut(s) 17, 251, 265, 472, 500, 873
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 3 cut(s) 76, 408, 625
VneI GTGCAC 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 542, 914
XbaI TCTAGA 1 cut(s) 244
XmaJI CCTAGG 1 cut(s) 737
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 3 cut(s) 245, 738, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.