Rw2G033310
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000263
Physical Location & Seq
Reverse (-)
54585993 .. 54587192
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G033310.1

Sequence Viewer

Length: 1200 bp
ATGTTTGGTCTTTATTGTAGAACAAGATTGCAATTAGTATTTCCAAGTTATCTCTGCTTTCGAAAGACGCCTCCTTTTATCACATCATTTTCATCAAAATCATTATCAGGTGCTGAAATTGATGAAAAAGGTCGCTCTTTTACAGTTTCATACTTTGTGAACTCATTTGGGTTCTCCCCAGAACTTGCTCTTTTTTTGTCCAAGAAACATAAGATACAGTTTGAATCCCGAGAAAAACCAGACTCAGTTATTAAGCTTCTGAAACACTATGGACTCAATGGTACCCATGTCTCTGAAATCGCTAAGAAACGCCCACACCTGTTTTTATCCAATGCTGAGAAGACCCTTTTGCCCAAACTCGAGTTTTTTTGTTCTATTGGCATTTCAGGCGCTGTCCTTGCTAGGCTCCTTTGTAACAACCCAAGAATCTTGGCAGTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATCTCACCAAAACTCTACGTATCCCCGATGAAAAGCTCCGTTATTTCTTTGGTGACTTCAGGCTGAATAGTTTGGAAAGACTGTGCATTGTTGCTCGAAATATTCCGGTGCTGATAGCACATGATGTGCCACAATCCTCATTTCCTCTGTGGGTGCCCTTTTATTTTAGGGCACTATCCTTTGACTCTGAGAAGGTTAAGACAAATGTTCACAAGGTCATTAGCATGGGATTCGACCCTTCATCTGCCACATTCATGAAAGCACTGTATGTGATATCAGTGACGGATACATTGAAATGGGAACAGAAGATGGAATTTTATAGCAAATGGGGTTGGACTGAAGATGGTGTGTTGTTGGCATTTAGAAGGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATATCCAGTAAAATGGATTTTTATGTGAATACAATAGGTTGCCAGCCCTCAGATGTGGTTGGATGTCCAGATGTTCTAACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATTGCAAAGGAAGATGTATCGATACTTACCATTCTGCAGAAAAGTGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCAAGTACCTGAATTGCTGACATCTTACAAGGAAAAAATCAGTCTTGCAAAGTTTGGCTTAGGATTAGATGAAAGAGGTGGAGTGAAACAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

399

Amino Acids

45.8

Weight (kDa)

9.37

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 84 - 164 5.2e-11 mTERF
mTERF PF02536 215 - 358 1.2e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 2 cut(s) 281, 622
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 3 cut(s) 511, 828, 841
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 2 cut(s) 283, 1110
AfiI CCNNNNNNNGG 1 cut(s) 1009
AgsI TTSAA 2 cut(s) 224, 763
AjuI GAANNNNNNNTTGG 2 cut(s) 1058, 1090
AluBI AGCT 3 cut(s) 256, 441, 505
AluI AGCT 3 cut(s) 256, 441, 505
Alw26I GTCTC 2 cut(s) 295, 458
AlwNI CAGNNNCTG 2 cut(s) 113, 392
Ama87I CYCGRG 2 cut(s) 228, 359
ApoI RAATTY 1 cut(s) 782
Asp700I GAANNNNTTC 1 cut(s) 1070
Asp718I GGTACC 1 cut(s) 281
AspA2I CCTAGG 1 cut(s) 977
AspLEI GCGC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 466, 533
AsuII TTCGAA 1 cut(s) 61
AvaI CYCGRG 2 cut(s) 228, 359
AvrII CCTAGG 1 cut(s) 977
BaeGI GKGCMC 2 cut(s) 627, 643
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BanI GGYRCC 2 cut(s) 281, 622
BbsI GAAGAC 1 cut(s) 347
BccI CCATC 2 cut(s) 772, 806
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciVI GTATCC 2 cut(s) 500, 748
BclI TGATCA 1 cut(s) 1089
BcoDI GTCTC 2 cut(s) 295, 458
BfaI CTAG 3 cut(s) 402, 978, 1198
BfmI CTRYAG 1 cut(s) 1052
BfoI RGCGCY 1 cut(s) 393
BfuI GTATCC 2 cut(s) 500, 748
BlnI CCTAGG 1 cut(s) 977
BmeT110I CYCGRG 2 cut(s) 228, 359
BmiI GGNNCC 3 cut(s) 283, 407, 624
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 986
Bpu10I CCTNAGC 1 cut(s) 1162
Bpu14I TTCGAA 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 977
BsaWI WCCGGW 1 cut(s) 574
Bsc4I CCNNNNNNNGG 1 cut(s) 1009
Bse1I ACTGG 2 cut(s) 876, 1003
BseCI ATCGAT 1 cut(s) 1037
BseDI CCNNGG 1 cut(s) 977
BseGI GGATG 1 cut(s) 938
BseLI CCNNNNNNNGG 1 cut(s) 1009
BseMII CTCAG 5 cut(s) 258, 327, 469, 648, 933
BseNI ACTGG 2 cut(s) 876, 1003
BseSI GKGCMC 2 cut(s) 627, 643
BshNI GGYRCC 2 cut(s) 281, 622
BshVI ATCGAT 1 cut(s) 1037
BsiHKCI CYCGRG 2 cut(s) 228, 359
BsiSI CCGG 1 cut(s) 575
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 1 cut(s) 1009
BsmAI GTCTC 2 cut(s) 295, 458
BsmFI GGGAC 1 cut(s) 825
BsoBI CYCGRG 2 cut(s) 228, 359
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 627, 643
Bsp143I GATC 2 cut(s) 469, 1089
BspCNI CTCAG 5 cut(s) 257, 328, 468, 649, 932
BspDI ATCGAT 1 cut(s) 1037
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 3 cut(s) 283, 407, 624
BspMAI CTGCAG 1 cut(s) 1056
BspT104I TTCGAA 1 cut(s) 61
BspT107I GGYRCC 2 cut(s) 281, 622
BsrI ACTGG 2 cut(s) 876, 1003
BssECI CCNNGG 1 cut(s) 977
BssMI GATC 2 cut(s) 469, 1089
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 977
Bst4CI ACNGT 4 cut(s) 145, 219, 552, 735
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 488
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 914
BstDEI CTNAG 8 cut(s) 244, 303, 336, 442, 455, 657, 919, 1162
BstF5I GGATG 1 cut(s) 938
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 2 cut(s) 472, 1092
BstMAI GTCTC 2 cut(s) 295, 458
BstMBI GATC 2 cut(s) 469, 1089
BstMWI GCNNNNNNNGC 2 cut(s) 387, 398
BstSFI CTRYAG 1 cut(s) 1052
BstSLI GKGCMC 2 cut(s) 627, 643
BstSNI TACGTA 1 cut(s) 488
BstV2I GAAGAC 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 883
Bsu15I ATCGAT 1 cut(s) 1037
BsuI GTATCC 2 cut(s) 500, 748
BsuTUI ATCGAT 1 cut(s) 1037
BtsCI GGATG 1 cut(s) 938
BtsIMutI CAGTG 3 cut(s) 731, 753, 865
Cac8I GCNNGC 1 cut(s) 914
CaiI CAGNNNCTG 2 cut(s) 113, 392
CciI TCATGA 1 cut(s) 723
CfoI GCGC 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 1037
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 282, 1109
CviAII CATG 4 cut(s) 287, 590, 694, 724
CviJI RGCY 8 cut(s) 256, 406, 441, 505, 532, 916, 1014, 1161
CviKI_1 RGCY 8 cut(s) 256, 406, 441, 505, 532, 916, 1014, 1161
CviQI GTAC 2 cut(s) 282, 1109
DdeI CTNAG 8 cut(s) 244, 303, 336, 442, 455, 657, 919, 1162
DpnI GATC 2 cut(s) 471, 1091
DpnII GATC 2 cut(s) 469, 1089
Eco105I TACGTA 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 977
Eco32I GATATC 1 cut(s) 744
Eco57I CTGAAG 3 cut(s) 511, 828, 841
Eco88I CYCGRG 2 cut(s) 228, 359
EcoRV GATATC 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 977
ErhI CCWWGG 1 cut(s) 977
FaeI CATG 4 cut(s) 290, 593, 697, 727
FalI AAGNNNNNCTT 4 cut(s) 1058, 1090, 1145, 1177
FaqI GGGAC 1 cut(s) 825
FatI CATG 4 cut(s) 286, 589, 693, 723
FbaI TGATCA 1 cut(s) 1089
FokI GGATG 1 cut(s) 945
FspBI CTAG 3 cut(s) 402, 978, 1198
GlaI GCGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 986
HaeII RGCGCY 1 cut(s) 393
HapII CCGG 1 cut(s) 575
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 4 cut(s) 290, 593, 697, 727
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HindIII AAGCTT 2 cut(s) 254, 439
HinfI GANTC 8 cut(s) 224, 242, 273, 426, 653, 699, 838, 969
HpaII CCGG 1 cut(s) 575
HphI GGTGA 2 cut(s) 466, 533
Hpy166II GTNNAC 2 cut(s) 160, 679
Hpy188I TCNGA 6 cut(s) 261, 295, 458, 658, 922, 995
Hpy188III TCNNGA 4 cut(s) 228, 724, 938, 1100
Hpy8I GTNNAC 2 cut(s) 160, 679
HpyAV CCTTC 4 cut(s) 655, 717, 828, 865
HpyCH4III ACNGT 4 cut(s) 145, 219, 552, 735
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 5 cut(s) 31, 555, 1022, 1054, 1151
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 398
HpyF3I CTNAG 8 cut(s) 244, 303, 336, 442, 455, 657, 919, 1162
HpySE526I ACGT 1 cut(s) 487
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 4 cut(s) 290, 593, 697, 727
HspAI GCGC 1 cut(s) 390
KpnI GGTACC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 1089
Kzo9I GATC 2 cut(s) 469, 1089
LmnI GCTCC 2 cut(s) 411, 510
MaeI CTAG 3 cut(s) 402, 978, 1198
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 3 cut(s) 413, 521, 748
MalI GATC 2 cut(s) 471, 1091
MboI GATC 2 cut(s) 469, 1089
MboII GAAGA 5 cut(s) 352, 787, 821, 877, 1040
MhlI GDGCHC 2 cut(s) 627, 643
MluCI AATT 5 cut(s) 32, 117, 782, 1017, 1115
MlyI GAGTC 4 cut(s) 236, 267, 647, 847
MmeI TCCRAC 2 cut(s) 782, 910
MnlI CCTC 6 cut(s) 81, 616, 624, 928, 1003, 1172
MroXI GAANNNNTTC 1 cut(s) 1070
MseI TTAA 3 cut(s) 252, 666, 1016
MslI CAYNNNNRTG 3 cut(s) 692, 722, 763
MspI CCGG 1 cut(s) 575
MwoI GCNNNNNNNGC 2 cut(s) 387, 398
NdeII GATC 2 cut(s) 469, 1089
NlaIII CATG 4 cut(s) 290, 593, 697, 727
NlaIV GGNNCC 3 cut(s) 283, 407, 624
NmuCI GTSAC 2 cut(s) 521, 748
NspV TTCGAA 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 359
PagI TCATGA 1 cut(s) 723
PdmI GAANNNNTTC 1 cut(s) 1070
PfeI GAWTC 4 cut(s) 224, 426, 699, 969
PleI GAGTC 4 cut(s) 236, 267, 647, 846
PpsI GAGTC 4 cut(s) 236, 267, 647, 846
Ppu21I YACGTR 1 cut(s) 488
PspN4I GGNNCC 3 cut(s) 283, 407, 624
PspXI VCTCGAGB 1 cut(s) 359
PstI CTGCAG 1 cut(s) 1056
PstNI CAGNNNCTG 2 cut(s) 113, 392
RsaI GTAC 2 cut(s) 283, 1110
RsaNI GTAC 2 cut(s) 282, 1109
RseI CAYNNNNRTG 3 cut(s) 692, 722, 763
SaqAI TTAA 3 cut(s) 252, 666, 1016
Sau3AI GATC 2 cut(s) 469, 1089
SchI GAGTC 4 cut(s) 236, 267, 647, 847
SduI GDGCHC 2 cut(s) 627, 643
SfcI CTRYAG 1 cut(s) 1052
Sfr274I CTCGAG 1 cut(s) 359
SfuI TTCGAA 1 cut(s) 61
SlaI CTCGAG 1 cut(s) 359
SmiMI CAYNNNNRTG 3 cut(s) 692, 722, 763
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SnaBI TACGTA 1 cut(s) 488
Sse9I AATT 5 cut(s) 32, 117, 782, 1017, 1115
SspI AATATT 1 cut(s) 571
SspMI CTAG 3 cut(s) 402, 978, 1198
StyI CCWWGG 1 cut(s) 977
TaaI ACNGT 4 cut(s) 145, 219, 552, 735
TaiI ACGT 1 cut(s) 490
TaqI TCGA 5 cut(s) 61, 360, 565, 702, 1037
TasI AATT 5 cut(s) 32, 117, 782, 1017, 1115
TfiI GAWTC 4 cut(s) 224, 426, 699, 969
Tru1I TTAA 3 cut(s) 252, 666, 1016
Tru9I TTAA 3 cut(s) 252, 666, 1016
TscAI CASTG 3 cut(s) 738, 753, 865
TseFI GTSAC 2 cut(s) 521, 748
Tsp45I GTSAC 2 cut(s) 521, 748
TspDTI ATGAA 8 cut(s) 81, 138, 138, 513, 699, 712, 740, 1188
TspGWI ACGGA 2 cut(s) 497, 767
TspRI CASTG 3 cut(s) 738, 753, 865
XapI RAATTY 1 cut(s) 782
XhoI CTCGAG 1 cut(s) 359
XmaJI CCTAGG 1 cut(s) 977
XmnI GAANNNNTTC 1 cut(s) 1070
XspI CTAG 3 cut(s) 402, 978, 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.