Rh2BG446700
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000263
Physical Location & Seq
Forward (+)
63135841 .. 63136817
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG446700.1

Sequence Viewer

Length: 888 bp
ATGAAGGTACGCTTCGACACCCCAGAAAAACCCGACTCTGTTATTAAGCTTTTTAAAGACTATGGACTCAGTGATGCCCACATCTCTGACATTGTTAAGAAATGCCCAGTTTTGCTTGTATCCAATGCTGAAAAGACCCTTTGGCCAAAACTCCAGTTTTTCACTTCCATTGGCCTTTCGGGCAATGACCTTGCCCGGATCTTCCGTGTCAACGCAAATATCTTGACATTGAGCTTAGAGAGAAGTATTAGACCTTGTTATGATATTATGAAAACTCTAGAAATACCTGAGCATAAGGTGCAAGAAGCGTCATTTCCTCTGTGGGTGTGTTCTCATTTGCTTGCACTGTCATTTGACTCTGAGAAGGTTAAGACAAATGTCGAGAAGGTCATCAGCATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCTTTGTATGTGGTATCGGTGACCAATGCAGCAAAGTGGAAACACAAGATGGAATTTTATGAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTGTGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAATAAAATGGGTTGCCAGCCTGCAGATCTGGCTGCACGTCCAGATATTCTGACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTCATCAGATTTCTCCAGTCAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCATTGTGCACAAAAACGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAATTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGCCGAATTTGGTTTAGGATTCGACGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

295

Amino Acids

33.84

Weight (kDa)

8.64

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 16 - 134 3.1e-12 mTERF
mTERF PF02536 116 - 259 4.1e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 416
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 485, 857
AcuI CTGAAG 2 cut(s) 531, 544
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 1 cut(s) 601
AhdI GACNNNNNGTC 1 cut(s) 412
AjiI CACGTC 1 cut(s) 638
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 5 cut(s) 49, 234, 434, 558, 581
AluI AGCT 5 cut(s) 49, 234, 434, 558, 581
Alw21I GWGCWC 1 cut(s) 759
Alw44I GTGCAC 1 cut(s) 755
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 143, 172
ApaLI GTGCAC 1 cut(s) 755
ApeKI GCWGC 2 cut(s) 461, 632
ApoI RAATTY 2 cut(s) 485, 857
ArsI GACNNNNNNTTYG 2 cut(s) 643, 675
Asp700I GAANNNNTTC 1 cut(s) 773
AspA2I CCTAGG 1 cut(s) 680
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 463
AvrII CCTAGG 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 759
BalI TGGCCA 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 2 cut(s) 473, 619
BccI CCATC 1 cut(s) 475
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 3 cut(s) 278, 681, 851
BfmI CTRYAG 1 cut(s) 621
BfuI GTATCC 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 180
BglII AGATCT 1 cut(s) 625
BisI GCNGC 2 cut(s) 462, 633
BlnI CCTAGG 1 cut(s) 680
BlsI GCNGC 2 cut(s) 463, 634
Bme1390I CCNGG 1 cut(s) 196
BmeRI GACNNNNNGTC 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 638
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 64, 837
BmuI ACTGGG 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 377
BpmI CTGGAG 2 cut(s) 137, 689
Bpu10I CCTNAGC 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 680
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse1I ACTGG 3 cut(s) 107, 154, 706
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 680
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 82, 279, 351
BseNI ACTGG 3 cut(s) 107, 154, 706
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 2 cut(s) 473, 619
BsgI GTGCAG 1 cut(s) 618
BshFI GGCC 2 cut(s) 145, 174
BsiHKAI GWGCWC 1 cut(s) 759
BsiSI CCGG 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 712
BsnI GGCC 2 cut(s) 145, 174
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 3 cut(s) 198, 625, 792
BspANI GGCC 2 cut(s) 145, 174
BspCNI CTCAG 3 cut(s) 81, 280, 352
BspHI TCATGA 1 cut(s) 426
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 3 cut(s) 107, 154, 706
BssECI CCNNGG 1 cut(s) 680
BssMI GATC 3 cut(s) 198, 625, 792
BssT1I CCWWGG 1 cut(s) 680
Bst4CI ACNGT 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 342, 617, 621
BstDEI CTNAG 4 cut(s) 68, 235, 288, 360
BstEII GGTNACC 1 cut(s) 451
BstKTI GATC 3 cut(s) 201, 628, 795
BstMBI GATC 3 cut(s) 198, 625, 792
BstMWI GCNNNNNNNGC 3 cut(s) 180, 298, 629
BstPAI GACNNNNGTC 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 759
BstV1I GCAGC 2 cut(s) 473, 619
BstX2I RGATCY 2 cut(s) 198, 625
BstYI RGATCY 2 cut(s) 198, 625
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 145, 174
BtrI CACGTC 1 cut(s) 638
BtsIMutI CAGTG 3 cut(s) 76, 344, 568
Cac8I GCNNGC 3 cut(s) 342, 617, 621
CciI TCATGA 1 cut(s) 426
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 397, 427, 547
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 4 cut(s) 68, 235, 288, 360
DpnI GATC 3 cut(s) 200, 627, 794
DpnII GATC 3 cut(s) 198, 625, 792
DraI TTTAAA 1 cut(s) 55
DriI GACNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 680
Eco57I CTGAAG 2 cut(s) 531, 544
Eco91I GGTNACC 1 cut(s) 451
EcoO65I GGTNACC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 3 cut(s) 400, 430, 550
FalI AAGNNNNNCTT 3 cut(s) 28, 761, 793
FatI CATG 3 cut(s) 396, 426, 546
FbaI TGATCA 1 cut(s) 792
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 2 cut(s) 462, 633
Fsp4HI GCNGC 2 cut(s) 462, 633
FspBI CTAG 3 cut(s) 278, 681, 851
GluI GCNGC 2 cut(s) 462, 633
GsuI CTGGAG 2 cut(s) 137, 689
HaeIII GGCC 2 cut(s) 145, 174
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 297
Hin1II CATG 3 cut(s) 400, 430, 550
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 2 cut(s) 47, 432
HinfI GANTC 6 cut(s) 35, 66, 356, 541, 672, 870
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 3 cut(s) 211, 417, 757
Hpy188I TCNGA 4 cut(s) 88, 361, 651, 698
Hpy188III TCNNGA 5 cut(s) 223, 278, 382, 427, 641
Hpy8I GTNNAC 3 cut(s) 211, 417, 757
Hpy99I CGWCG 1 cut(s) 878
HpyAV CCTTC 3 cut(s) 358, 379, 420
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 7 cut(s) 301, 344, 461, 623, 635, 757, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 298, 629
HpyF3I CTNAG 4 cut(s) 68, 235, 288, 360
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 3 cut(s) 400, 430, 550
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 3 cut(s) 198, 625, 792
Lsp1109I GCAGC 2 cut(s) 473, 619
LweI GCATC 2 cut(s) 64, 837
MaeI CTAG 3 cut(s) 278, 681, 851
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 1 cut(s) 451
MalI GATC 3 cut(s) 200, 627, 794
MboI GATC 3 cut(s) 198, 625, 792
MboII GAAGA 5 cut(s) 193, 524, 580, 743, 815
MflI RGATCY 2 cut(s) 198, 625
MhlI GDGCHC 1 cut(s) 759
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 5 cut(s) 485, 720, 744, 818, 857
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 3 cut(s) 29, 60, 350
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 1 cut(s) 327
Mox20I TGGCCA 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 773
MscI TGGCCA 1 cut(s) 145
MseI TTAA 5 cut(s) 45, 54, 96, 369, 719
MslI CAYNNNNRTG 2 cut(s) 395, 551
Msp20I TGGCCA 1 cut(s) 145
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 180, 298, 629
NciI CCSGG 1 cut(s) 196
NdeII GATC 3 cut(s) 198, 625, 792
NlaIII CATG 3 cut(s) 400, 430, 550
NmuCI GTSAC 1 cut(s) 451
PagI TCATGA 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 3 cut(s) 541, 672, 870
PkrI GCNGC 2 cut(s) 463, 634
PleI GAGTC 3 cut(s) 29, 60, 350
PpsI GAGTC 3 cut(s) 29, 60, 350
PshAI GACNNNNGTC 1 cut(s) 377
PspEI GGTNACC 1 cut(s) 451
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 2 cut(s) 198, 625
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 2 cut(s) 395, 551
SaqAI TTAA 5 cut(s) 45, 54, 96, 369, 719
SatI GCNGC 2 cut(s) 462, 633
Sau3AI GATC 3 cut(s) 198, 625, 792
SchI GAGTC 3 cut(s) 29, 60, 350
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 2 cut(s) 64, 837
SfcI CTRYAG 1 cut(s) 621
SmiMI CAYNNNNRTG 2 cut(s) 395, 551
Sse9I AATT 5 cut(s) 485, 720, 744, 818, 857
SspI AATATT 1 cut(s) 574
SspMI CTAG 3 cut(s) 278, 681, 851
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 1 cut(s) 640
TaqI TCGA 3 cut(s) 15, 381, 873
TasI AATT 5 cut(s) 485, 720, 744, 818, 857
TfiI GAWTC 3 cut(s) 541, 672, 870
Tru1I TTAA 5 cut(s) 45, 54, 96, 369, 719
Tru9I TTAA 5 cut(s) 45, 54, 96, 369, 719
TscAI CASTG 3 cut(s) 76, 351, 568
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 461, 632
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 5 cut(s) 17, 284, 415, 443, 816
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 3 cut(s) 76, 351, 568
VneI GTGCAC 1 cut(s) 755
XapI RAATTY 2 cut(s) 485, 857
XbaI TCTAGA 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 773
XspI CTAG 3 cut(s) 278, 681, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.