Rmu_sc0000789.1_g000002
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000789.1
OG0000263
Physical Location & Seq
Reverse (-)
2751 .. 5098
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000789.1_g000002.1.cds

Sequence Viewer

Length: 1194 bp
atgcctcctaagactattagtcctattcccgtagctatcacaagcaagaccagtctcacaataattgcatttagcttgctggataacagaagtttgaatcttcttaccatccttgacctcgaatataggcttgtcgatcttcttgaagtgctcccacacctaggatcttccgaacttgctctctctttgtccaagaggcatagggtacgttttgaatccccagaaaaaccagacgcagttgttaagcttttcagggactatggattcagcaatgcccacatctctgaaattgtcaagaaactcccagagctgctcttagtcagtgagaagacccttttgcctaaacttgagttcttgggttccattggaattacaggcactcccctggctgagaccctttgcggcaacccaactgtgttgaaaatgagcttagagaattgtattagaccttgttgtgatatcatcaaaactctaggtatcccttatggaaaggtccctcgtttcattaagagatcgcagtggttgtttaaggtcaaagtactgagcaatgtcgctcgcaatgtttcagtactgaggtcactaaaagtgccagaatccacaatcgatttgtgtaggccccacaatcttgttccagtgtccactgacgccgatgagtttaatgaaaatgtcaacaaggtcatcagtatgggatttcctccttcaagctgtacatttatgaaagcactgtatgtgatttctatgatggatgaatcaaaattggcacagaggaaggagttttatcggaagtttggttggactgaagataatatattgttggcatttagaaagaatcccatttttatgtccatttctgagaagaattttttgagtaaaatggattttcttgtgaacaaagtgggtttacagccggctgatgtggctggatatcccagtgttctaattaatagtttggagaaatggatcatacctaggtgttcagttatcagagttctgctgttgaagggcttaatacggaagggacaattttctttacttggtacggcgttaatgggcaataaagaccagttcttgcatagatttgtgaacaagtatgaagagcaagtacccgaattattgagcatttttcaagggaaaattggtcttgcagaactgggcttaggatttgaggaaagagatggagtgaaacaaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

397

Amino Acids

44.67

Weight (kDa)

9.29

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 402
AclWI GGATC 2 cut(s) 172, 968
AcsI RAATTY 1 cut(s) 859
AcuI CTGAAG 1 cut(s) 819
AcyI GRCGYC 1 cut(s) 645
AfaI GTAC 6 cut(s) 207, 540, 570, 709, 1039, 1104
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 7 cut(s) 97, 146, 215, 421, 702, 1000, 1127
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 6 cut(s) 35, 75, 247, 310, 429, 705
AluI AGCT 6 cut(s) 35, 75, 247, 310, 429, 705
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 59, 386
AlwI GGATC 2 cut(s) 172, 968
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 859
AseI ATTAAT 1 cut(s) 942
AspA2I CCTAGG 2 cut(s) 160, 968
AspS9I GGNCC 2 cut(s) 493, 615
AvaII GGWCC 1 cut(s) 493
AvrII CCTAGG 2 cut(s) 160, 968
BarI GAAGNNNNNNTAC 2 cut(s) 1086, 1118
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 297
BccI CCATC 3 cut(s) 116, 736, 1169
BceAI ACGGC 1 cut(s) 1056
BciT130I CCWGG 1 cut(s) 386
BciVI GTATCC 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 59, 386
BfaI CTAG 3 cut(s) 161, 473, 969
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 2 cut(s) 311, 403
BlnI CCTAGG 2 cut(s) 160, 968
BlsI GCNGC 2 cut(s) 312, 404
BmcAI AGTACT 2 cut(s) 540, 570
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 493
BmeRI GACNNNNNGTC 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 493, 615
BmiI GGNNCC 3 cut(s) 361, 495, 617
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 2 cut(s) 924, 1160
BmuI ACTGGG 2 cut(s) 924, 1160
BpiI GAAGAC 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 1156
BpuEI CTTGAG 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 160, 384, 968
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 5 cut(s) 51, 632, 930, 1063, 1155
Bse3DI GCAATG 3 cut(s) 277, 553, 565
BseBI CCWGG 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 3 cut(s) 160, 384, 968
BseGI GGATG 2 cut(s) 108, 751
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 3 cut(s) 277, 553, 565
BseMII CTCAG 4 cut(s) 381, 533, 563, 843
BseNI ACTGG 5 cut(s) 51, 632, 930, 1063, 1155
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 616
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 3 cut(s) 269, 479, 1032
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 59, 386
BsmFI GGGAC 3 cut(s) 269, 479, 1032
BsnI GGCC 1 cut(s) 616
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 4 cut(s) 136, 164, 512, 960
BspACI CCGC 1 cut(s) 402
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 4 cut(s) 382, 534, 564, 844
BspDI ATCGAT 1 cut(s) 603
BspLI GGNNCC 3 cut(s) 361, 495, 617
BspPI GGATC 2 cut(s) 172, 968
BspQI GCTCTTC 1 cut(s) 1089
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 3 cut(s) 277, 553, 565
BsrFI RCCGGY 1 cut(s) 907
BsrGI TGTACA 1 cut(s) 707
BsrI ACTGG 5 cut(s) 51, 632, 930, 1063, 1155
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 3 cut(s) 160, 384, 968
BssMI GATC 4 cut(s) 136, 164, 512, 960
BssNI GRCGYC 1 cut(s) 645
BssT1I CCWWGG 2 cut(s) 160, 968
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 415, 726
Bst6I CTCTTC 1 cut(s) 1089
BstACI GRCGYC 1 cut(s) 645
BstAUI TGTACA 1 cut(s) 707
BstC8I GCNNGC 3 cut(s) 77, 556, 909
BstDEI CTNAG 8 cut(s) 9, 316, 390, 430, 542, 572, 852, 1156
BstF5I GGATG 2 cut(s) 108, 751
BstKTI GATC 4 cut(s) 139, 167, 515, 963
BstMAI GTCTC 2 cut(s) 59, 386
BstMBI GATC 4 cut(s) 136, 164, 512, 960
BstMWI GCNNNNNNNGC 1 cut(s) 917
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 603
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 1 cut(s) 616
BsuTUI ATCGAT 1 cut(s) 603
BtsCI GGATG 2 cut(s) 108, 751
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 6 cut(s) 328, 524, 639, 639, 722, 937
Cac8I GCNNGC 3 cut(s) 77, 556, 909
Cfr10I RCCGGY 1 cut(s) 907
Cfr13I GGNCC 2 cut(s) 493, 615
ClaI ATCGAT 1 cut(s) 603
CseI GACGC 2 cut(s) 242, 653
Csp6I GTAC 6 cut(s) 206, 539, 569, 708, 1038, 1103
CviQI GTAC 6 cut(s) 206, 539, 569, 708, 1038, 1103
DdeI CTNAG 8 cut(s) 9, 316, 390, 430, 542, 572, 852, 1156
DpnI GATC 4 cut(s) 138, 166, 514, 962
DpnII GATC 4 cut(s) 136, 164, 512, 960
DriI GACNNNNNGTC 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 1089
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 1089
Eco130I CCWWGG 2 cut(s) 160, 968
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 2 cut(s) 460, 926
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 819
EcoO109I RGGNCCY 2 cut(s) 493, 615
EcoRII CCWGG 1 cut(s) 384
EcoRV GATATC 2 cut(s) 460, 926
EcoT14I CCWWGG 2 cut(s) 160, 968
ErhI CCWWGG 2 cut(s) 160, 968
FaqI GGGAC 3 cut(s) 269, 479, 1032
Fnu4HI GCNGC 2 cut(s) 311, 403
FokI GGATG 2 cut(s) 95, 758
Fsp4HI GCNGC 2 cut(s) 311, 403
FspBI CTAG 3 cut(s) 161, 473, 969
GluI GCNGC 2 cut(s) 311, 403
HaeIII GGCC 1 cut(s) 616
HapII CCGG 1 cut(s) 908
HgaI GACGC 2 cut(s) 242, 653
Hin1I GRCGYC 1 cut(s) 645
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 6 cut(s) 97, 215, 264, 593, 749, 829
HpaII CCGG 1 cut(s) 908
Hpy166II GTNNAC 5 cut(s) 639, 670, 889, 902, 1084
Hpy188I TCNGA 5 cut(s) 172, 286, 783, 853, 986
Hpy188III TCNNGA 2 cut(s) 143, 295
Hpy8I GTNNAC 5 cut(s) 639, 670, 889, 902, 1084
HpyAV CCTTC 4 cut(s) 708, 763, 994, 1009
HpyCH4III ACNGT 2 cut(s) 415, 726
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 68, 1072, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 917
HpyF3I CTNAG 8 cut(s) 9, 316, 390, 430, 542, 572, 852, 1156
HpySE526I ACGT 1 cut(s) 208
Hsp92I GRCGYC 1 cut(s) 645
KroI GCCGGC 1 cut(s) 907
KroNI GCCGGC 1 cut(s) 909
Kzo9I GATC 4 cut(s) 136, 164, 512, 960
LguI GCTCTTC 1 cut(s) 1089
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 1 cut(s) 297
MaeI CTAG 3 cut(s) 161, 473, 969
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 576
MalI GATC 4 cut(s) 138, 166, 514, 962
MboI GATC 4 cut(s) 136, 164, 512, 960
MboII GAAGA 7 cut(s) 92, 131, 159, 340, 812, 868, 1106
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 773
MnlI CCTC 8 cut(s) 15, 128, 189, 507, 567, 705, 759, 1159
MroNI GCCGGC 1 cut(s) 907
MseI TTAA 7 cut(s) 243, 507, 528, 657, 942, 1007, 1046
MslI CAYNNNNRTG 2 cut(s) 683, 839
MspI CCGG 1 cut(s) 908
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 917
NaeI GCCGGC 1 cut(s) 909
NdeII GATC 4 cut(s) 136, 164, 512, 960
NgoMIV GCCGGC 1 cut(s) 907
NlaIV GGNNCC 3 cut(s) 361, 495, 617
NmuCI GTSAC 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 1089
PdiI GCCGGC 1 cut(s) 909
PfeI GAWTC 6 cut(s) 97, 215, 264, 593, 749, 829
PkrI GCNGC 2 cut(s) 312, 404
PpuMI RGGWCCY 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 3 cut(s) 361, 495, 617
PspPI GGNCC 2 cut(s) 493, 615
PspPPI RGGWCCY 1 cut(s) 493
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 6 cut(s) 207, 540, 570, 709, 1039, 1104
RsaNI GTAC 6 cut(s) 206, 539, 569, 708, 1038, 1103
RseI CAYNNNNRTG 2 cut(s) 683, 839
SapI GCTCTTC 1 cut(s) 1089
SaqAI TTAA 7 cut(s) 243, 507, 528, 657, 942, 1007, 1046
SatI GCNGC 2 cut(s) 311, 403
Sau3AI GATC 4 cut(s) 136, 164, 512, 960
Sau96I GGNCC 2 cut(s) 493, 615
ScaI AGTACT 2 cut(s) 540, 570
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 153
SinI GGWCC 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 683, 839
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SsiI CCGC 1 cut(s) 402
SspMI CTAG 3 cut(s) 161, 473, 969
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 2 cut(s) 160, 968
TaaI ACNGT 2 cut(s) 415, 726
TaiI ACGT 1 cut(s) 211
TaqI TCGA 3 cut(s) 120, 135, 603
TatI WGTACW 3 cut(s) 538, 568, 707
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 6 cut(s) 97, 215, 264, 593, 749, 829
Tru1I TTAA 7 cut(s) 243, 507, 528, 657, 942, 1007, 1046
Tru9I TTAA 7 cut(s) 243, 507, 528, 657, 942, 1007, 1046
TscAI CASTG 6 cut(s) 328, 524, 639, 646, 729, 937
TseFI GTSAC 1 cut(s) 576
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 576
TspDTI ATGAA 5 cut(s) 493, 675, 731, 762, 1107
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 6 cut(s) 328, 524, 639, 646, 729, 937
VpaK11BI GGWCC 1 cut(s) 493
VspI ATTAAT 1 cut(s) 942
XapI RAATTY 1 cut(s) 859
XmaJI CCTAGG 2 cut(s) 160, 968
XspI CTAG 3 cut(s) 161, 473, 969
ZrmI AGTACT 2 cut(s) 540, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.