Rmu_sc0020327.1_g000002
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020327.1
OG0000263
Physical Location & Seq
Reverse (-)
8421 .. 8930
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020327.1_g000002.1.cds

Sequence Viewer

Length: 510 bp
atgggaatcaaaccttcatcatctgcgacgttcatgaaagcactagttgtgacttttatggtggatgcatcaaagcgggaacaaaagatgcaattttataaggaacggggttggactgaagatgattttgtgttggcatttagaaaacatcccctgtttatgaccttctctgagaagaatatttcgagcaaaatggattttcttctgaacaagatgggttggcagcctgcaaatgtggctggggatccatatgttttaacttatagtttggagaagcggatcatacctacatgttcagttattagagttctcctgttgaagggcttgataacgaagggagagtgttccttggtttccattctgaagaaaagtgagaagtacttgttgaataagattgtgctcaaatatcaagagcaagtacctgaactattgagcatctatcaaggcaaaatgggtcttgcagacctcggattaggatttgaggacagagctagactgaatcatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

169

Amino Acids

19.33

Weight (kDa)

9.47

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AciI CCGC 2 cut(s) 76, 277
AclWI GGATC 3 cut(s) 239, 252, 287
AcuI CTGAAG 2 cut(s) 138, 383
AfaI GTAC 2 cut(s) 380, 420
AfiI CCNNNNNNNGG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 2 cut(s) 319, 388
AhlI ACTAGT 1 cut(s) 43
AluBI AGCT 1 cut(s) 491
AluI AGCT 1 cut(s) 491
Alw21I GWGCWC 1 cut(s) 402
AlwI GGATC 3 cut(s) 239, 252, 287
ApeKI GCWGC 1 cut(s) 223
BamHI GGATCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 208
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 2 cut(s) 44, 492
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmcAI AGTACT 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 4 cut(s) 55, 77, 78, 444
BsaJI CCNNGG 2 cut(s) 348, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 348, 466
BseGI GGATG 2 cut(s) 70, 148
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 2 cut(s) 244, 279
BspACI CCGC 2 cut(s) 76, 277
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 3 cut(s) 239, 252, 287
BssECI CCNNGG 2 cut(s) 348, 466
BssMI GATC 2 cut(s) 244, 279
BssT1I CCWWGG 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 70, 148
BstKTI GATC 2 cut(s) 247, 282
BstMBI GATC 2 cut(s) 244, 279
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsCI GGATG 2 cut(s) 70, 148
Cac8I GCNNGC 1 cut(s) 228
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 2 cut(s) 379, 419
CviAII CATG 2 cut(s) 34, 291
CviJI RGCY 4 cut(s) 226, 239, 324, 491
CviKI_1 RGCY 4 cut(s) 226, 239, 324, 491
CviQI GTAC 2 cut(s) 379, 419
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 246, 281
DpnII GATC 2 cut(s) 244, 279
Eco130I CCWWGG 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 138, 383
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 2 cut(s) 37, 294
FaiI YATR 9 cut(s) 35, 59, 99, 161, 250, 252, 264, 284, 292
FatI CATG 2 cut(s) 33, 290
FauI CCCGC 1 cut(s) 69
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 2 cut(s) 77, 135
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 44, 492
GluI GCNGC 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 243
Hin1II CATG 2 cut(s) 37, 294
HinfI GANTC 2 cut(s) 6, 499
Hpy188I TCNGA 4 cut(s) 172, 207, 363, 470
Hpy188III TCNNGA 2 cut(s) 34, 410
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 4 cut(s) 24, 175, 313, 328
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 68, 91, 230, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 2 cut(s) 37, 294
Kzo9I GATC 2 cut(s) 244, 279
LpnPI CCDG 5 cut(s) 167, 225, 240, 326, 435
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 4 cut(s) 55, 77, 78, 444
MaeI CTAG 2 cut(s) 44, 492
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 246, 281
MboI GATC 2 cut(s) 244, 279
MboII GAAGA 4 cut(s) 131, 187, 194, 376
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 475, 476
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeI CATATG 1 cut(s) 250
NdeII GATC 2 cut(s) 244, 279
NlaIII CATG 2 cut(s) 37, 294
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 1 cut(s) 294
PagI TCATGA 1 cut(s) 33
PciI ACATGT 1 cut(s) 290
PfeI GAWTC 2 cut(s) 6, 499
PkrI GCNGC 1 cut(s) 225
PscI ACATGT 1 cut(s) 290
PsiI TTATAA 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 380, 420
RsaNI GTAC 2 cut(s) 379, 419
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 2 cut(s) 244, 279
ScaI AGTACT 1 cut(s) 380
SduI GDGCHC 1 cut(s) 402
SetI ASST 7 cut(s) 16, 32, 167, 289, 424, 468, 493
SfaNI GCATC 4 cut(s) 55, 77, 78, 444
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 76, 277
SspI AATATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 44, 492
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 185
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 2 cut(s) 6, 499
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 6, 22, 50
XagI CCTNNNNNAGG 1 cut(s) 317
XceI RCATGY 1 cut(s) 294
XspI CTAG 2 cut(s) 44, 492
ZrmI AGTACT 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.